Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816203,9370CA35.8% 2201.3 / 242.1 1472intergenic (+321/+137)JCVSYN2_00845/JCVSYN2_00850lipoprotein/inorganic diphosphatase
Reads supporting (aligned to +/- strand):  ref base C (431/479);  new base A (386/122);  total (834/638)
Fisher's exact test for biased strand distribution p-value = 2.14e-26
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 1490 total aligned reads displayed.

AGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑‑TTTTTTTTTTTTTTTTGT‑A‑AAAATAAAAGTA‑A‑GATTTGGATCAACCAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTT  >  CP016816/203810‑204064
                                                                                                                                      |                                                                                                                                 
  ccATTTTTAAAAAAGCCTATTTTCTATGTTTTTTTTTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑‑‑TTTTTTTTTTTTTTTGT‑A‑AAAATAAAAGTA‑A‑GATTTGGATCAAc                                                                                                                                <  2:3432905/128‑1 (MQ=255)
          taaaattccTATGTTTTTGGTTTTTTATTTTAATTTTCAACATTTCAACGCTTTAAAATTTTATTTTTTTTTCTTGT‑‑TTTTTTTTTTTTTTTTGT‑A‑AAAATAAAAGTA‑A‑GATTTGGATCAACCAAAAc                                                                                                                          <  1:6584584/121‑1 (MQ=255)
          aaaaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑‑TTTTTTTTTTTTTTTT‑T‑A‑AAAATAAAAGTA‑A‑TATTTGGATCAACCaaaaatt                                                                                                                        >  1:5748042/1‑125 (MQ=255)
           aatatcgcttttttCTATGGTTTTTATTATACTTATCAACATTACTACTCTTTAAAATGGTTTTTTTTTGGCTTGT‑‑TTTTTTTTTTTTTTTTGT‑A‑AAAATAAAAGTA‑A‑GATTTGGATCAACCAAAACt                                                                                                                         <  2:5185858/116‑1 (MQ=255)
            ataatgcTATTTTATATGCTTTTTATTTTATATATTAAAATTAAAACTGTTTAAAATTTTATTTTTTATGTTTG‑‑‑‑TTTTTTTTTTTTTTTGT‑A‑AAAATAAAAGTA‑A‑GATTTGGATCAACCAAAACtata                                                                                                                      <  2:6450891/122‑1 (MQ=255)
             aaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTGTT‑TTTTTTTTTTTTTTTTTT‑ATAAAATAAATTTA‑A‑TATTTTGATAAACAaaaaat                                                                                                                         >  1:3761302/1‑126 (MQ=255)
             aaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTGT‑‑TTTTTTTTTTTTTTTTTT‑A‑AAAATAAAATTT‑A‑GTTTTGGTTTAACCaaatcatt                                                                                                                       >  1:3527075/1‑123 (MQ=255)
                 cgatagTTCTAGGCTTTTTTTTATAATTATCAAAATTACAACTGTTTAAAAGTGTATTTTTTAGGCTTGT‑‑TTTTTTTTTTTTTTTTGT‑A‑AAAATAAAAGTA‑A‑GATTTGGATCAACCAAAACTATATCa                                                                                                                   <  1:1603268/123‑1 (MQ=255)
                  ttATTTTATATGCTTTTTTTTATAATTATCAACATTAAAAATATTTCAAAGTTTATTTTTTAGGCTTT‑‑‑TTTTTTTTTTTTTTTTGT‑A‑AAAATAAAAGTA‑A‑GATTTGGATCAACCAAAACTATATCaaa                                                                                                                 <  1:3144808/127‑1 (MQ=255)
                     tGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑‑TTTTTTTTTTTTTTTT‑A‑A‑AAAAAAAAAGTA‑A‑TATTTGGTTAAAACAAAAATATATaaaaaaaa                                                                                                             >  1:4684302/1‑128 (MQ=255)
                      aacatAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGGGTGT‑‑TTTTTTTTTTTTTTTTGT‑A‑AAAATAAAATAA‑A‑TATTTGTATGAAACAAAACTA‑ATGaaaaaaa                                                                                                             >  2:2930731/5‑128 (MQ=255)
                        tCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTGTTTTTTTTTTTTTTTTTTTGT‑A‑AAAAAAAAATTA‑A‑GATTTGGATAAACAAAAAATATATAaaaaaa                                                                                                              >  1:2387263/1‑128 (MQ=255)
                        catAGGCTTTTTATAATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTGTTATTTTTTTTTTTTTTTTGT‑A‑AAAATAAATTTA‑A‑ATTTTTGTACAACCAAAACAATAGAaaaaaa                                                                                                              >  2:3675818/3‑128 (MQ=255)
                         cTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTGTTTTTTTTTTTTTTTTTTTTT‑A‑AAAATAAAAGTA‑A‑AATTTGTTTAAACAAAAAATATATaaaaaaaa                                                                                                             >  1:5657017/1‑128 (MQ=255)
                         cTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTGT‑‑TTTTTTTTTTTTTTTTGT‑A‑AAAATAAAAGTA‑A‑TATTTGGATGAACCAAAAAAATATCAAAAAAAta                                                                                                           >  2:5855265/1‑127 (MQ=255)
                         atAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑‑‑‑TTTTTTTTTTTTTTGT‑A‑AAAATAAAAGTA‑A‑GATTTGGTTCCACCAAAACTATATCAACAACATT‑aaa                                                                                                       >  2:4253144/2‑128 (MQ=255)
                          tAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑‑TTTTTTTTTTTTTTTTTT‑T‑TAAAAAAAAATATA‑GATTTTTTTAAAACAAAAAAATTAAAAAAAAATT‑a                                                                                                         >  1:6330082/1‑128 (MQ=255)
                             gCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTGT‑‑TTTTTTTTTTTTTTTTGT‑A‑AAAATAAAAGTA‑A‑TATTTTGATAAAACAAAAAATTATAAAAAAAATT‑aaaa                                                                                                      >  2:1108689/1‑128 (MQ=255)
                                 tttATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTGT‑‑TTTTTTTTTTTTTTTTTT‑A‑AAAATAAAATTA‑A‑ATTTTTTATAAAAAAAAAATATAAAAAAAAAATT‑aaaaaaaa                                                                                                  >  1:730945/1‑128 (MQ=255)
                                 tttATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTGT‑‑TTTTTTTTTTTTTTTTTT‑A‑AAAATAAAAGTA‑A‑TATTTTGATAACCCAAAAATATATAAAAAAAATT‑aaaaaaaa                                                                                                  >  2:5632236/1‑128 (MQ=255)
                                    attttAATTAGCAACATTAAAACGCTTTCAAATTGTATTTTTTAGGCTTG‑‑‑TTTTTTTTTTTTTTTTGT‑A‑AAAATAAAAGTA‑A‑GATTTGGATCAACCAAAACTATATCAAAAAAATT‑AAAAAAAAtagt                                                                                              <  2:604718/128‑1 (MQ=255)
                                     ttatACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑‑TTTTTTTTTTTTTTTTTTAA‑AAAAAAAAATTA‑A‑AATTTGCAAAACCAAAAAATAAAT‑AAAAAAATT‑TAAAAAAAtattt                                                                                             >  1:4128860/1‑128 (MQ=255)
                                     ttatACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑‑TTTTTTTTTTTTTTTTTT‑T‑AAAAATAAAGAA‑T‑AATATATAAAAACAAAAAATAAAAAaaaaaaaat‑aaaaaaaattatt                                                                                             >  2:1377854/1‑124 (MQ=255)
                                       ataattaaaaaaaTTAAAAAGATTTAAAAGTGTATTTTTTAGGCTTGT‑‑TTTTTTTTTTTTTTTTGT‑A‑AAAATAAAAGTA‑A‑GATTTGGATCAACCAAAACTATATCAAAAAAATT‑AAAAAAAAtagttt                                                                                            <  1:1289442/116‑1 (MQ=255)
                                        ttctttttaattttACTACGATTTGAAAGTGTATTTTTTAGGTTTG‑‑‑‑‑TTTTTTTTTTTTTTGT‑A‑AAAATATAAGTT‑A‑GATTTGGATCATCCAAAACTATATCTAAAAAATT‑AAAAAATAtagttta‑gtt                                                                                       <  1:5242670/116‑1 (MQ=255)
                                         aCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑‑TTTTTTTTTTTTTTTTTT‑A‑AAAATAAAAGTA‑A‑TATTTGGAAAACCAAAAAATAAAAAAAAAAAATT‑aaaaaaataattttttt                                                                                         >  2:2236507/1‑118 (MQ=255)
                                           ttATCAACATATCAACGCATTCAAAGTGTATTTTTTTGGCTTGT‑‑TTTTTTTTTTTTTTTTGT‑A‑AAAATAAAAGTA‑A‑GATTTGGATCAACCAAAACTATATCAAAAAAATT‑AAAAAAAAtagttta‑gtt                                                                                       <  2:6319302/128‑1 (MQ=255)
                                           ttATAAAAATTAAAACGCTTTGAAATTGTATTTTTTATGGTTT‑‑‑TTTTTTTTTTTTTTTTGT‑A‑AAAATAAAAGTA‑A‑GATTTGGATCAACCAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTA‑GTTg                                                                                      <  2:5965349/128‑1 (MQ=255)
                                             aaaaaCATTAAAACGCTTTAAAATGTTTTTTTTTAGGCTTGT‑‑TTTTTTTTTTTTTTTTGT‑A‑AAAATAAAAGTA‑A‑GATTTGGATCAACCAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTA‑GTTGa                                                                                     <  2:3528936/125‑1 (MQ=255)
                                                      aCAACGCTTTCAAAGTGTATTTTTTAGGCTTGT‑‑TTTTTTTTTTTTTTTTTT‑A‑AAAATAAAATTA‑A‑GATTTTGATAAACCAAAAAATTATAAAAAAAATT‑AAAAAAAATATTTTA‑TTTTATTTTAAAAt                                                                            >  1:5835305/1‑128 (MQ=255)
                                                      aCAACGCTTTCAAAGTGTATTTTTTAGGCTTGT‑‑TTTTTTTTTTTTTTTTGT‑A‑AAAATAAAATTA‑A‑TATTTGGTTCAACCAAAACAATTTAAAAAAAATT‑AAAAAAAATAGTTTA‑GTTTAGTTTAAAAt                                                                            >  2:1848453/1‑128 (MQ=255)
                                                       cAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑‑TTTTTTTTTTTTTTTT‑T‑A‑AAAATAAAATTA‑A‑TATTTTTATAAAAAAAAAATATATAAAAAAAATT‑AAAAAAAATATTTTA‑TTTTATTTTaaaaaatg                                                                         >  1:6487985/1‑124 (MQ=255)
                                                         aCGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑‑TTTTTTTTTTTTTTTTTT‑A‑AAAAAAAAATTA‑A‑GATTTTGAAGAACCAAAACTAAAAAAAAAAAAAT‑AAAAAAAATAATTTATTTTGAGttaaaaaatga                                                                         >  2:6128963/1‑119 (MQ=255)
                                                          cGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑‑TTTTTTTTTTTTTTTTTT‑T‑AAAAAAAAAATA‑ATTATTTGGATAAACCAAAAATTTTTAAAAAAAATT‑AAAAAAAATATTTTA‑TTTTATTTTaaataaagc                                                                        >  1:1783357/1‑122 (MQ=255)
                                                            cTTTCAAAGTGTATTTTTTAGGCTTGT‑‑TTTTTTTTTTTTTTTTGT‑A‑AAAATAAAAGTT‑A‑TATTTGGATCAACCAAAAATTTATAAAAAAAATT‑TAAAAAAATATTTTA‑TTTTAGTTTGAAATcagaat                                                                      >  1:1010897/1‑123 (MQ=255)
                                                              ttCAAAGTGTATTTTTTAGGCTTGT‑‑TTTTTTTTTTTTTTTTGT‑A‑AAAATAAAAGTA‑A‑AATTTGGAAAAACCAAAAATATTAAAAAAAAATA‑AAAAAAAATTGTTTT‑TTTGAGTTTAAAAACTgaaaat                                                                    >  2:250993/1‑123 (MQ=255)
                                                                 aaaGTGTATTTTTTAGGCTTGT‑‑TTTTTTTTTTTTTTTTTT‑A‑AAAAAAAAATTA‑A‑AATTTGTATAAAAAAAAATTTTTAAAAAAAAATT‑AAAAAAAAAATTTTT‑TTTGTTTTTAAAATCTGCaaattat                                                                 >  1:2803353/1‑125 (MQ=255)
                                                                  atgttttttttttAGTTTTG‑‑‑TTTTTTTTTTTTTTTTGT‑A‑AAAATAAAAGTA‑A‑GATTTGGATCAACCAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGt                                                               <  2:726696/121‑1 (MQ=255)
                                                                     tgtATTTTTTAGGCTTGT‑‑TTTTTTTTTTTTTTTTTT‑A‑AAAATAAAATTA‑A‑TATTTGGATCAACCAAAAATTTATAAAAAAAATA‑AAAAAAAATTTTTTT‑TTTTTGTTTAAAATATAAATATATATTaa                                                             >  1:2296187/1‑127 (MQ=255)
                                                                       tATTTTTTAGGCTTGTT‑TTTTTTTTTTTTTTTTGT‑A‑AAAAAAAAATTA‑A‑TATTTTGAAAAACCAAAAATTTTTAAAAAAAATT‑AAAAAAAATAATTTA‑TTTTATTTTCAACTCTTCATATATAATACa                                                            >  1:5918349/1‑128 (MQ=255)
                                                                              tAGGCTTGT‑‑TTTTTTTTTTTTTTTTTT‑A‑AAAAAAAAATAA‑A‑TATTTGGATAAACCAAAACAATAAAAAAAAAATT‑AAAAAAAAAATTTTT‑ATTTATTTTCAAAAATCCATATATTGTACAAATGAAtt                                                    >  2:5322706/1‑128 (MQ=255)
                                                                               aGGCTTGT‑‑TTTTTTTTTTTTTTTTTT‑A‑AAAATAAAAGTA‑A‑TATTTGGTACAACCAAAAATTTTTAAAAAAAATT‑AAAAAAAAAATTTTA‑ATTTAGTTAAAAATAATAATTTATAGTACAAATAAAttt                                                   >  1:2647010/1‑128 (MQ=255)
                                                                                   ttttttttttttttttttttttGT‑A‑TAAATAAAATTA‑A‑GATTTTTATAAATAAAAAATATATCAAAAAAATT‑AAAAAAAATAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTAt                                                 <  2:4795518/122‑1 (MQ=255)
                                                                                     ttttttttttttttttttttGT‑A‑AAAATAATAGTA‑A‑GTTTTGGATTAAAAAAATCTATATCAAAAAAATT‑AAAAAAAATAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGa                                               <  2:4600226/124‑1 (MQ=255)
                                                                                     ttgtttttttttttttttttGT‑A‑AAAATAAAAGTA‑A‑TATTTGGATAAAACAAAAATATATAAAAAAAATT‑AAAAAAAATATTTTT‑TTTGATTTTAAAATAGTAATATATATTAAAAAGGAtttttttt                                               >  1:6050537/5‑124 (MQ=255)
                                                                                      ttttttttttttttttttttt‑A‑AAATTTAAATTA‑A‑TTTTTGTATTAACCAAAAATATATCAAAAAAATT‑AAAAAAAATAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGAt                                              <  2:512565/125‑1 (MQ=255)
                                                                                       gtttttttttttttttttGT‑A‑AAAATAAAAGTA‑A‑TATTTGTATCAACCAAAAATTTATCAAATAAAAT‑AAAAAAAAATTTTTA‑TTTTATTTTAAAAAATAAATATAAATAAAAAATGAATTtattatt                                             >  1:2196667/3‑127 (MQ=255)
                                                                                         tttttttttttttttttt‑A‑AAAATAAAAGTA‑A‑GATTTGGATAAACCAAAACAATTTAAAAAAAATT‑AAAAAAATATTTTTA‑TTTTTTTTTAAAATATGCATATTTTTTACAATGTATTTTAttttata                                           >  2:1520280/1‑122 (MQ=255)
                                                                                         tttttttttttttttttt‑A‑AAAATAAAAGTA‑A‑AATTTGGATCAACCAAAAATATATAAAAAAAATT‑AAAAAAAATATTTTA‑TTTTTGTTTCAAAAATGCATATATATTAAAAAGGAATTTATtatata                                           >  1:5369099/1‑126 (MQ=255)
                                                                                         ttttttttttttttttGT‑A‑TAAATAAAAGTA‑A‑GATTTGTATCAACCAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGa                                           <  2:2037296/128‑1 (MQ=255)
                                                                                          tttttttttttttttGT‑A‑AAAATTAATTTA‑A‑TATTTGTATTAATTAAAAATATATAAAAAAATTT‑AAAAAGAATAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaa                                          <  2:62296/128‑1 (MQ=255)
                                                                                           ttttttttttttttGT‑A‑AAAATAAAAGTA‑A‑GTTTTTTATATATTATTAATATATCATAAAAATT‑AAAAAAAATAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaa                                         <  2:2743479/128‑1 (MQ=255)
                                                                                             ttttttttttttGT‑A‑TATATAAAAGTA‑A‑GATTTTTATTAATTAATAATATATTAAAAAAATT‑TATAAATATAGTTTA‑GTTGAGTTTCAAATATGAATATATAGTACAAAGGAATTTATGATAGaaaaa                                       <  2:3956356/128‑1 (MQ=255)
                                                                                             ttttttttttttGT‑A‑AAAATAATAGTA‑A‑GATTTGTATAATACAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaa                                       <  1:1415235/128‑1 (MQ=255)
                                                                                               ttttttttttGT‑A‑AAAATTAAAGTA‑A‑GATTTGGATAAACAAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaaaa                                     <  1:1677801/128‑1 (MQ=255)
                                                                                               ttttttttttGT‑A‑AAAATAAAAGTA‑A‑GATTTGGATCAACCAAAAATTTATAAAAAAAATTAAAAAAAAATATTTTA‑TTTTAGTTTAAAATATGAATAAATATTAAAAATGAATTTATGATTAaaaaaa                                      >  1:3026763/1‑128 (MQ=255)
                                                                                                  tttttttGT‑A‑AAAATAAAAGTA‑A‑GATTTGGATCAACAAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATgg                                  <  2:3771155/128‑1 (MQ=255)
                                                                                                    tttttGT‑A‑ATAATAATAGTA‑A‑GATTTGGATCAACCAAAACTATATCAAAAAAATT‑TAAAAAAATAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGAt                                <  2:414754/128‑1 (MQ=255)
                                                                                                    tttttGT‑A‑AAAATAAAAGTA‑A‑GATTTGGATCAACCAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGAt                                <  2:5530805/128‑1 (MQ=255)
                                                                                                     ttttGT‑A‑AAAATAAAAGTA‑A‑GATTTGGATCAAACAAAAATATATCAAAAAAATT‑AAAAAAAATAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGAtt                               <  2:5405205/128‑1 (MQ=255)
                                                                                                      ttttT‑A‑AAAATAAAAGTA‑A‑GTTTTGGATCAACCAAAAATATAAAAAAAAAATT‑AAAAAAAATATTTTT‑TTTGAGTTTAAAATCTGCATATATTTTAAAAATGAATTTTTTATATAAAAAAATTGAttt                              >  1:150082/1‑127 (MQ=255)
                                                                                                      tttGT‑A‑TAAATTAAAGTA‑A‑GATTTTGTTTAACCTAAACTTTATAAAAATAATT‑AAAAAAAATAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTa                              <  2:3122469/128‑1 (MQ=255)
                                                                                                      tttGT‑A‑AAAATTATAGTT‑A‑GATTTGGATCAAAAAAAACTATATAAAAAAAATT‑AAAAAAAATATTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTa                              <  1:1965859/128‑1 (MQ=255)
                                                                                                       tttt‑A‑AAAATAAAAGTA‑A‑GATTTGTATCAACCAAAACTATATCAAAATAATT‑AAAAAAAATAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTat                             <  1:5108314/125‑2 (MQ=255)
                                                                                                       ttGT‑A‑AAAATAAAAGTA‑A‑GATTTTGATCAACAAAAACTATATAAAAAAAATT‑AAAAAAAATAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTat                             <  1:4586721/128‑2 (MQ=255)
                                                                                                       ttGT‑A‑AAAATAAAAGTA‑A‑GATTTGGATAAACCAAAACTATATCATAAAAATT‑AAATAAAATAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTat                             <  2:2127576/128‑2 (MQ=255)
                                                                                                         gT‑A‑AAAATAAAAGTA‑A‑GATTTGTATAAACCAAAACTATATAAAAAAAATT‑AAAAAAAATAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTatca                           <  2:5061531/128‑4 (MQ=255)
                                                                                                          ttttataataatAGTA‑A‑GATTTTGATGAAAAAAAACTATATCAAAAATATT‑AAAAAAAATAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGt                            <  1:397291/122‑1 (MQ=255)
                                                                                                            a‑aaaaTAAAAGTA‑A‑GATTTGGATCAACCAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTatcaac                         <  2:6578908/128‑6 (MQ=255)
                                                                                                              aaaaTTAAAGTA‑A‑GATTTGGATCAACCAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTatcaact                        <  2:495513/128‑7 (MQ=255)
                                                                                                                aaTAAAATTA‑A‑GATTTTGATAAAACAAAAATATATCAAAAAAATT‑ATAAAATATATTTTA‑GTTGATTTTAAAATCTTCATATATAGTAAAAAGGAATTTATGATAGAAAAAAATGGATTatcaactaa                      <  1:3688951/128‑9 (MQ=255)
                                                                                                                  tAATAGTA‑A‑TATTTTGATCAACAAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATc                    <  2:1590485/128‑1 (MQ=255)
                                                                                                                  tAATAGTA‑A‑GTTTTGGATCAAGCAAAACTATATCAATAAAATT‑AAAAAATATAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATc                    <  1:4412883/128‑1 (MQ=255)
                                                                                                                  tAAATGTA‑A‑GTTTTGGATCAAACAAAACTATATCAATAAAATT‑AAAAAATATAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATc                    <  1:6238677/128‑1 (MQ=255)
                                                                                                                  tAAAAGTT‑A‑GATTTGGATCAACCAAAAATATATCAAAAAAATT‑AAAAAAAATAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATc                    <  1:2100932/128‑1 (MQ=255)
                                                                                                                   tatattA‑A‑GATTTTGATCAAAAAATACTATATCAAAAAAATT‑AAAAAAATTATTTTA‑GTTGAGTTTCAAATATGCATATATAGTACAAAGTAATTTATGATAGAAAAAAATGGATTAGTTGATAATcc                   <  1:389289/123‑1 (MQ=255)
                                                                                                                   aaaaGTA‑A‑GATTTGGATCAAACAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATcc                   <  1:5027436/128‑1 (MQ=255)
                                                                                                                   aaaaGTA‑A‑GATTTGGATAAACCAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTA‑TTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATATAAAAAAATGGATTAGTTGATAATcc                   >  2:3322594/1‑128 (MQ=255)
                                                                                                                    taaGTA‑A‑GATTTGGATAAAATAAATATATATAAAAATAATT‑ATAAATAATAGTTTA‑GTTGAGTTTAAAATATGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCa                  <  2:1672187/127‑1 (MQ=255)
                                                                                                                    aaaGTA‑A‑GATTTGGATCAAACAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCa                  <  1:5429134/128‑1 (MQ=255)
                                                                                                                     aaGTA‑A‑GATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAAATAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCa                  <  1:5486498/128‑1 (MQ=255)
                                                                                                                     aaGTA‑A‑GATTTGGATCAACCAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAt                 >  1:4837944/1‑128 (MQ=255)
                                                                                                                         a‑a‑GATTTGGATCAACCAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAttttt             >  1:5994565/1‑128 (MQ=255)
                                                                                                                         a‑a‑GATTTGGATCAACCAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAt                 >  1:6137871/1‑124 (MQ=255)
                                                                                                                         a‑a‑GATTTGGATCAAAAAAAACTATATAAAAAAAATT‑AAAAAAAATAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAttttt             <  2:2328046/128‑1 (MQ=255)
                                                                                                                           a‑GATTTGTATCAACCAAAACTATATCAAAAAAATT‑AAAATAAATAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAtttttt            <  1:2519443/128‑1 (MQ=255)
                                                                                                                           a‑GATTTGGATCAACCAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAtttttt            >  1:4261/1‑128 (MQ=255)
                                                                                                                             gATTTGGATCAACCAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAtt                <  1:5156146/123‑1 (MQ=255)
                                                                                                                             gATTTGGATCAACCAAAACTATATCAAAAAAATA‑AAAAAAATTAGTTTA‑GTTGAGTTTCAAATCTGCATAAATTGTACAAAGGAATTAATGATAGAAAAAAATTGATTAGTAGA‑AATTCAATTTTTaa          >  2:4346802/1‑128 (MQ=255)
                                                                                                                              aTTTGGATCAACCAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTA‑TTTGAGAATCAAATCTGCAAATATAGTACAAAGTAATATATGATAGAAAAAAATGTTATAGTTGATAAACAATTATTTaa          >  1:3400918/1‑128 (MQ=255)
                                                                                                                              aTTTGGATCAACCAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTaa          >  1:329904/1‑128 (MQ=255)
                                                                                                                              aTTTGGATCAACCAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTaa          >  2:5774179/1‑128 (MQ=255)
                                                                                                                               tttGGATCAAACAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAAt         <  1:2936672/128‑1 (MQ=255)
                                                                                                                                ttGGATCATACAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAAtt        <  2:1952039/128‑1 (MQ=255)
                                                                                                                                ttGGATCAACCAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAt                 <  1:841126/119‑1 (MQ=255)
                                                                                                                                 tGGATCAACCAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAAttt       >  2:824662/1‑128 (MQ=255)
                                                                                                                                 tGGATCAACCAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAAttt       >  2:5728022/1‑128 (MQ=255)
                                                                                                                                   gATCAACCAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTg     <  1:1178813/128‑1 (MQ=255)
                                                                                                                                    aTCAACCAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGt    >  1:6415049/1‑128 (MQ=255)
                                                                                                                                     tCAACCAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTAATGATTGAAAAAAATGTATTAGTTGATAATCCATTTTTTAATTATGtt   >  1:4928506/1‑128 (MQ=255)
                                                                                                                                      |                                                                                                                                 
AGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑‑TTTTTTTTTTTTTTTTGT‑A‑AAAATAAAAGTA‑A‑GATTTGGATCAACCAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTT  >  CP016816/203810‑204064

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑