Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816311,1490T.60.8% 938.7 / inf 1431intergenic (‑72/‑242)JCVSYN2_01300/JCVSYN2_01305hypothetical protein/30S ribosomal protein S21
Reads supporting (aligned to +/- strand):  ref base T (346/214);  new base . (479/389);  total (825/606)
Fisher's exact test for biased strand distribution p-value = 1.57e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.24e-02

Only 100 of 2042 total aligned reads displayed.

GTACCAGTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATATA‑A‑TGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTTTTATTTAA  >  CP016816/311022‑311276
                                                                                                                                   |                                                                                                                                 
gTACCAGTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATAcattcat‑‑‑‑t                                                                                                                                   >  1:6504594/1‑128 (MQ=255)
  aCCAGTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑tat                                                                                                                                 >  2:5679447/1‑128 (MQ=255)
  aCCAGTTGTAAAAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTTATACATACTATTCAAAACATATATAACATACATTCAT‑‑‑‑aat                                                                                                                                 >  2:3269504/1‑128 (MQ=255)
    cAGTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAAT‑AAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑tatata                                                                                                                              >  1:2748488/1‑128 (MQ=255)
    aaGTTGTAATAACTAATCCAAATTAAATTAAAATTGTAATTAACTTTTTCATTTTACACACAACTTATTAAAAAATAAAATACTTGTTACATAAGATTCAAAACATATATAACATACATTCAT‑‑‑‑tatat                                                                                                                               <  2:59267/127‑1 (MQ=255)
       ttGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑taaatata                                                                                                                            >  1:2324592/1‑128 (MQ=255)
          taataaCTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑tatatatatat                                                                                                                         >  1:2053090/1‑128 (MQ=255)
           tataaaaaaTACAAAAGAACATAAAATTTTAAATAACATTTTCAATTTACACACCCCTTATTAAAAAAAAAAATACTTGTTACATACTATTCAAAACATATATAACATACATTCAT‑‑‑‑tatatatatata                                                                                                                        <  1:6405367/121‑1 (MQ=255)
           aataaCTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACTATTCAAAACATATATAACATACATTCAT‑‑‑‑tatatatatata                                                                                                                        >  1:4230466/1‑128 (MQ=255)
           aataaCTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑tatatatatata                                                                                                                        >  1:3539624/1‑128 (MQ=255)
            ataaCTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑tatatatatatat                                                                                                                       <  2:4371051/128‑1 (MQ=255)
             taaCTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑tatatatatatata                                                                                                                      >  2:3730389/1‑128 (MQ=255)
              aaCTAATCCAAAAGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACACCTTATTAAAAAATAAAATACTTGTTACAAACGATTCAAAACATATATAACATACATTCAT‑‑‑‑tatatatatatatat                                                                                                                     <  1:5536225/128‑1 (MQ=255)
               aCTAATCCAAATGAACTTAAAATTTTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑tatatatatatatata                                                                                                                    <  1:4449400/128‑1 (MQ=255)
               aCTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTGACATACGATGAAAATCATATATAACATACATTCAT‑‑‑‑tatatatatatatata                                                                                                                    >  2:5785351/1‑128 (MQ=255)
                 tAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑tatatatatatatatata                                                                                                                  >  1:1886308/1‑128 (MQ=255)
                 tAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑tatatatatatatatata                                                                                                                  >  2:4911032/1‑128 (MQ=255)
                 tAATACAAATGAAATTAAAATTGTAATTAACTTTTTAATTTTACACACCACTTATTAAAAAATAAAATACTTGTTAAATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑tatatatatatatatata                                                                                                                  <  2:5244226/128‑1 (MQ=255)
                 ataTCCAAATTAACTTAAAATTGTAATTTACTTTTTTAATTTACACACCCATTATTAAAAAATAAAATACTTGTTACATACTATTCAAAACATATATAAAATACATTCAT‑‑‑‑tatatatatatatatata                                                                                                                  <  2:1150259/126‑1 (MQ=255)
                   atataaattaaattAAAATTGTAATTAAATTTTTCATTTTAAACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑tatatatatatatttatata                                                                                                                <  2:3623143/124‑1 (MQ=255)
                   atacAAATTAAATTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑tatatatatatatatatata                                                                                                                <  2:3374246/125‑1 (MQ=255)
                    taaaaattaaattAATATTTTTATTAACTTTTTTTTTTTAAACACCCCTTTTTAAAAAATAAAATATTTGTTATATACGATTCAAAAAATATATAAAATACATTCAT‑‑‑‑tatatatatatatatatatat                                                                                                               <  2:4457588/125‑1 (MQ=255)
                    tCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑tatatatatatatatatatat                                                                                                               >  1:5029701/1‑128 (MQ=255)
                    tCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATAAAACATACATACAT‑‑‑‑tatatatatatatatatatat                                                                                                               >  1:306102/1‑128 (MQ=255)
                     ccAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑tatatatatatatatatatata                                                                                                              >  2:1495026/1‑128 (MQ=255)
                     aaaatatataatAAAATTTTAAATAACTTTATAATTTTACACACAAATTATTAAAAAATAAAAAATTTGTTACATAAGATTAAAAACATATATAACATACAATCAT‑‑‑‑tatatatatatatatatatata                                                                                                              <  1:2484000/117‑1 (MQ=255)
                      aaaaTGTACTTAAAATTGTAATTTAATTTTTCATTTTACACACACCTTATTAAAAAATAAAATATTTGTTACATAAGATTCAAAACATATATAACATAAATTCAT‑‑‑‑tacatatatatatatatatataa                                                                                                             <  2:3169694/127‑2 (MQ=255)
                       aaaTGATCTTAAAATTTTATTTAATTTTTTCATTTTAAAAAACCATTATTAAAAAATAAAATACTTTTTATATAAGATTAAAAACATATATAACATACATTCAT‑‑‑‑tatatatatatatatatatatata                                                                                                            <  2:1866728/128‑1 (MQ=255)
                        aaTGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTAGATACGATTCAAAACATATATAACATACATTCTT‑‑‑‑tatatttttatttttatatatatat                                                                                                           >  2:2781518/1‑128 (MQ=255)
                        aaTGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑tatataaatatatatatataaataa                                                                                                           >  1:4568572/1‑127 (MQ=255)
                         aataaattAAAATTTTAATTAACTTTTTTATTTTACACACACCTTATTAAAAAATAAAATAATTTTTACATAATATTCAAAACATATATAACATACATTCAT‑‑‑‑tatatatatatatatatatatatata                                                                                                          <  1:330411/122‑1 (MQ=255)
                          ttaaCTTAAATTTTTATTTAAAAATTTAATTATACAAACCAATTATAAAAAAAAAAAAAACATTTTAAATAAGATTCAAAAAATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATATa‑a                                                                                                        <  1:3956548/126‑1 (MQ=255)
                          tGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑tatatatatatatatatatatataaag                                                                                                         >  1:4108642/1‑125 (MQ=255)
                            atattAAATTTTTAAATAAATTTATAATATTATAAAACACATATTAAAAAAAAAAATACTTGTTAAATACGATTCAAAAAATATATAACATAAATTCAA‑‑‑‑tatatatatatatatatatatatatataa                                                                                                       <  2:6510335/125‑4 (MQ=255)
                             aCTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑tatatatatatatatatatatataatgcaa                                                                                                      >  1:5673343/1‑122 (MQ=255)
                             aCTTAAAATTGTAATTAACTTTTTCATTTTACACACACCTTATTAAAAAATAAAATACTTGTTACATAAGATTCAAAACATATATAACATACATTCAT‑‑‑‑tatatatatataaatatatatataatgata                                                                                                      >  2:5035534/1‑122 (MQ=255)
                               ttAAAATTGTAATTAACTTTTTTATTTTACACACAACTTATTAAAAAATAAAATACTTGTTACATAATATTCAAAACATATATAACATACATTAAT‑‑‑‑‑‑TATATATATATATATATATATATA‑A‑TGCAata                                                                                                <  1:1665900/128‑1 (MQ=255)
                               ttAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATATCATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATA‑A‑TGCAata                                                                                                >  1:4840520/1‑128 (MQ=255)
                               ttAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑tatatatatatatatatatatataatcaaata                                                                                                    >  1:1380110/1‑120 (MQ=255)
                               ttAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATATA‑A‑ttaat                                                                                                  >  1:5289369/1‑124 (MQ=255)
                                  ataTTTTAATTATCTTTTTAATTTTAAACACAACTTATTAAAAAATAAAATAATTGTTATATTCGATTAAAAAAATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATATA‑A‑TGCAatat                                                                                               <  2:773614/126‑1 (MQ=37)
                                  aaaTTGTAATTAACTTTTTAATTTTAAACACACATTATTAAAAAATAAAATACTTGTTACATAAGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATA‑A‑TGCAATATGt                                                                                             <  2:1929522/128‑1 (MQ=255)
                                      tGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATATA‑A‑AGAAATATATaa                                                                                           >  2:3884493/1‑128 (MQ=255)
                                      tGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATA‑A‑TGCTATATGTattt                                                                                         >  2:4743113/1‑125 (MQ=255)
                                       ttaataatatttttCATTTTAAACACAACTTATTAAAAAATAAAATAATTGTTAAATACTATTCAAAAAATATATAACATAAATTCATTA‑‑TATATATATATATATATATATATATA‑A‑TGCAATATGTa                                                                                            <  2:4620307/119‑1 (MQ=255)
                                       gTAATTAACTTTTTCATTTTACACACACCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATA‑A‑TGCAATATGTAAATg                                                                                        <  2:661434/128‑1 (MQ=255)
                                          aTTAACTTATTTATTTTACACAAAACTTATTAAAAAATAAAATAATTTTTAAATTAGATTAAAAAAATATATAAAATAAATTCAT‑‑‑‑TATATATATATATATATATATATATA‑A‑TGCAATATGTAAATGa                                                                                       <  1:4717683/128‑1 (MQ=25)
                                            tAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATATA‑A‑TTCAATATttaaattaaa                                                                                     >  1:723288/1‑128 (MQ=255)
                                             aaCTTTTTCATTTTACACACACATTATTAAAAAATAAAAAACTTTTTAAATAATATTCAAAACATATATAACATACATTAATTATATATATATATATATATATATATATATA‑A‑TGCAATATGTAAATg                                                                                        <  1:96797/128‑1 (MQ=25)
                                                 ttttCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATA‑A‑A‑‑GAAATATGTAAATGAAAAAATTGt                                                                              >  1:2575969/1‑128 (MQ=255)
                                                 ttttCATTTTACACACAAATTATTATAAAATAAAATAATTGTTACATACGATTCAAAACATATATAAAATACATTCAT‑‑‑‑TATATATATATATATATA‑A‑ATATA‑A‑TGCAATATGTAAATGAAAATATGGt                                                                              <  2:1278098/128‑1 (MQ=255)
                                                   ttgttttaaaacacCCATTATTAAAATATATAATACTTGTTACAAAATATTCAAAAGATATATAACATACATTC‑T‑‑‑‑T‑TATATATATATATATATATATATA‑A‑TGCAATATGTAAATGAAAATATGGtat                                                                            <  2:6165670/118‑1 (MQ=255)
                                                   ttatatttACACACACCTTATTATAAAATAAAATATTTGTTACATATTATTAAAAAAATATATAACATACATTCATTA‑‑TATATATATATATATATATATATATA‑A‑TGCAATATGTAAATGAAAATATg                                                                                <  2:304583/123‑1 (MQ=255)
                                                     cATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATAT‑‑‑‑‑‑TGCTATATGTAAATTAATATATGGTataata                                                                        >  2:4166506/1‑128 (MQ=255)
                                                          tACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑‑‑TATATATATATATATATATATA‑A‑TGCAATATGTAAATGAAAATATTTTATAATATCAAc                                                                   >  2:2215422/1‑128 (MQ=255)
                                                           acacacCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATA‑A‑TGCAATATGTAAATGAAAATATGGTATAATAGCaa                                                                    >  1:6288067/1‑128 (MQ=255)
                                                           acacacCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATA‑A‑TGAAATATGTAAATGAAAATATTGTATAATAGCaa                                                                    >  1:6179746/1‑128 (MQ=255)
                                                            cacacCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATA‑A‑TTCAATATGTAAATGAAAATATTGTATAATAGCAAc                                                                   >  2:2309504/1‑128 (MQ=255)
                                                            aacacCCATTATTAAAAAATAAAATACTTGTTACATACTATTAAAAACATATATAACATACATTAATTA‑‑TATATATATATATATATATATATATA‑A‑TGCAATATGTAAATGAAAATATGGTATAATAg                                                                       <  2:3970324/127‑1 (MQ=255)
                                                               acacattattaAAAAATAAAATACTTGTTACATACTATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATA‑A‑TGCAATATGTAAATGAAAATATGGTATAATAGCAACCGt                                                                <  1:84101/123‑1 (MQ=255)
                                                                cacattattaAAAAATATAATACTTGTTACATAAGATTCAAAACATATATAAAATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATA‑A‑TGCAATATGTAAATGAAAATATGGTATAATAGCAACCGtt                                                               <  1:3389225/124‑1 (MQ=255)
                                                                 cccTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATATA‑A‑TTCAATATTTAAATGAAAATATATTATAATAGCaaaagt                                                                >  1:5783605/1‑124 (MQ=39)
                                                                      ataaaaaaaTAAAATAATTTTTACATAATATTCAAAAAATATATAAAATACATTTAT‑‑‑‑TATATATATATATATATATATATATA‑A‑TGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTtata                                                           <  2:892299/125‑1 (MQ=38)
                                                                        taAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATA‑A‑TGCAATATg                                                                                              <  1:318470/89‑1 (MQ=255)
                                                                        taAAAAATAAAATAATTGTTACATATGATTAAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATA‑A‑TGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGt                                                       <  1:3648559/128‑1 (MQ=255)
                                                                           aaaataaaatACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATA‑A‑TTCAATATGTAAATGAAAATATGTTATATTAGCAAACGTTTATAAACTaaa                                                    >  1:4319956/1‑128 (MQ=255)
                                                                           aaaataaaatACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATA‑A‑TGCAATATGTAAATGAAAATATGTTATAAAAGCAACCTTTTAAAAAATaaa                                                    >  1:491956/1‑128 (MQ=255)
                                                                               taatataTTTTTTATATAATATTAAAAAAATATATAATATAAATTATA‑‑‑‑TATATATATATATATATATATATATA‑A‑TGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTaaaaa                                                  <  2:2584205/128‑1 (MQ=255)
                                                                                aaaataCTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATA‑A‑TTCAATATGTAAATGAAAATATGGTATAATAGAAACAGTTTATAAAGTAAAAAAAt                                               >  1:2671012/1‑128 (MQ=255)
                                                                                aaaataCTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATA‑A‑TGCAATATGTAAATGAAAATATGGTATAATATCAACCGTTTATAAATTAAAAAAAt                                               >  2:1394897/1‑128 (MQ=255)
                                                                                 aaataCTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATA‑A‑TGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATa                                              >  1:219371/1‑128 (MQ=255)
                                                                                    taCTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATA‑A‑TGCAATATGTAAATGAATATATGGTATAATAGCAACCTTTTATAAAGTataaaaaattat                                           >  2:2680628/1‑123 (MQ=255)
                                                                                    taCTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATA‑A‑TGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTa                                           <  1:593848/128‑1 (MQ=255)
                                                                                      cTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATA‑A‑TGCAATATTTTAATGAAAATTTGTTATAATAGAAACCGTTTATAAAGTAAAAAAATAGTaaa                                         >  2:1738911/1‑128 (MQ=255)
                                                                                      cTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATA‑A‑TGCAATATTTAAATGAAAATATGGTATAATATCAACCTTTTATAAAGTAAAAAAATAGTaaa                                         >  1:1032610/1‑128 (MQ=255)
                                                                                      cTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATA‑A‑TGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTaaa                                         <  1:6623268/128‑1 (MQ=255)
                                                                                       ttGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATATA‑A‑TGAAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAAAAGTaa                                          >  1:2904001/1‑128 (MQ=255)
                                                                                       ttGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATA‑A‑TTATATATGTAAAAGAAAATATGGTATAATAGCAACCATTTATAAAATAAAAAAATATTAAat                                        >  2:6397712/1‑128 (MQ=255)
                                                                                       ttGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATA‑A‑TCCTATATTTAAATGAAAATATGGTATAATAGCAACAGTTTATAAATTAAAAAAATAGTAAat                                        >  1:5425351/1‑128 (MQ=255)
                                                                                        ttttACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATA‑A‑TGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAata                                       <  1:1528353/126‑1 (MQ=255)
                                                                                           tACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATATA‑A‑TGAAATATGTAAAATAATATATGGTATAATAGCAAGCGATTTAAAAGTAAAAAAATAGAAAataa                                      >  2:5470305/1‑127 (MQ=37)
                                                                                               taataTTCAAAACATATATAAAATACATTAAT‑‑‑‑‑‑TATATATATATATATATATATATA‑A‑TGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATactact                                <  1:1244780/124‑1 (MQ=255)
                                                                                               taagATTCAAAAAATATATAAAATAAATT‑AT‑‑‑‑T‑TATATATATATATATATATATATA‑A‑TGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATactact                                <  2:3505455/125‑1 (MQ=255)
                                                                                               tACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATATATATTTAAATATTTATATGAAAATATTTTATAATAGCAAAATTTTATAAATAAAAAAAATATTAAAtataa                                    >  2:163992/1‑127 (MQ=255)
                                                                                                 cGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATA‑A‑TGAAATATGTAAATTAAAATATGTTATAATAGAAACCTTTTATAAAGTAAAAAAATAGTAAATATACTACTTa                              >  2:5140317/1‑128 (MQ=255)
                                                                                                 ataatCAAAAAATATATATCATAAATTC‑‑‑‑‑‑TATATATATATATATATATATATATA‑A‑TGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTa                              <  2:6280524/124‑1 (MQ=255)
                                                                                                     tCAAAACATATATAACATACATTCAT‑‑‑‑‑‑‑‑TATATATATATATATATATATA‑A‑TGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACt                        <  2:5357745/128‑1 (MQ=255)
                                                                                                     tCAAAACATATATAACATACATTCAT‑‑‑‑‑‑‑‑TATATATATATATATATATATA‑A‑TGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACt                        >  2:2434311/1‑128 (MQ=255)
                                                                                                       aaaaaaTATATAAAATACATTCA‑‑‑‑‑‑‑‑ATATATATATATATATATATATA‑A‑TGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACtaa                      <  1:379654/128‑1 (MQ=255)
                                                                                                         aaCATATATAAAATAAATTAAT‑‑‑‑‑‑TATATATATATATATATATATATA‑A‑TGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACtaa                      <  1:5140317/128‑1 (MQ=255)
                                                                                                             tatataACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATA‑A‑TTCAATATGTAAATGAAAATATTGTATAATAACAACCTTTTAAAAAGTAAAAAAATAATATATATACTAAATATTAACTAATaaa                  >  1:6070969/1‑128 (MQ=255)
                                                                                                              atataACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATA‑A‑TGAAATATGTAAATTAAAATATTTTATAATAGCAACATTTTATAAATTAAAAAAATAGTAAATATACTACTTATTTACTAATaaaa                 >  1:1145520/1‑128 (MQ=255)
                                                                                                               tataTCATATATTTAT‑‑‑‑TATATATATATATATATATATATATA‑A‑TGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATaaa                  <  2:2070766/128‑1 (MQ=255)
                                                                                                                 taACATACATTCAT‑‑‑‑TATATATATATATATATATATATATA‑A‑TGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAAt                >  2:408029/1‑128 (MQ=255)
                                                                                                                  aaCATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATA‑A‑TGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACtaata                    >  2:4268103/1‑121 (MQ=255)
                                                                                                                   acatacatTCAT‑‑‑‑TATATATATATATATATATATATATA‑A‑TTAAATATATAAAAAAAAATATTATAAAATAGCAACAGTTTATAAAAAAAAAAAATAATAAATATAAAAATTATAAAaaaataaaatat              >  2:483322/1‑126 (MQ=16)
                                                                                                                    catacatTCAT‑‑‑‑TATATATATATATATATATATATATA‑A‑TGAAATATGTAAATTAAAATATTTTATAATAGAAAAAGTTTATAAAGTAAAAAAATATTAAATATACTAATTATTTACTAatataatata             >  1:1770404/1‑128 (MQ=37)
                                                                                                                     atacatTCAT‑‑‑‑‑‑TATATATATATATATATATATATA‑A‑TGAAATATGTAAATAAAAAAATGTTATAATAGAAACCGATTATAAAGAAAAAATATAGAAAAAAAAATACATATATACTATTAAAATATAttt          >  2:6045797/1‑128 (MQ=255)
                                                                                                                     ataaatTAAT‑‑‑‑TATATATATATATATATATATATATA‑A‑TGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTAt            <  2:2919334/128‑1 (MQ=255)
                                                                                                                      tacatTCAT‑‑‑‑‑‑TATATATATATATATATATATATA‑A‑TGCAATATGTAAATGAAAATATGTTATAATATCAACCGTTTATAAAGAAAAAAAATAGTAAATATACTACTTATTTACAAATAAAATCTAttta         >  2:5540416/1‑127 (MQ=255)
                                                                                                                                   |                                                                                                                                 
GTACCAGTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATATA‑A‑TGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTTTTATTTAA  >  CP016816/311022‑311276

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑