BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP016816	= 311170	402 (0.090)	334 (0.080)	123/252	16.8	46.8%	intergenic (‑93/‑221)	JCVSYN2_01300/JCVSYN2_01305	hypothetical protein/30S ribosomal protein S21
*	?	CP016816	311174 =	357 (0.080)	334 (0.080)	123/252	16.8	46.8%	intergenic (‑97/‑217)	JCVSYN2_01300/JCVSYN2_01305	hypothetical protein/30S ribosomal protein S21
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 3363 total aligned reads displayed.

ATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCATTATATATATATATATATAT‑ATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTTTTATTTAAAAAAGTAATTTGAAAAATTATTAAA  >  CP016816/311047‑311301

ccaaatgaacttaaaattgtaattaactttttcattttacacaccccttattaaaaaataaaatacttgttacatacgattcaaaacatatataacatacattcattatatatatatatat‑atatata                                                                                                                                 <  1:4838449‑M1/22‑1 (MQ=255)

 tGAAATTAAAATTGTAATTAACTTATTAATTTTACACACCCCTTATATAAAAAAAAAAAAATTTTTACATAATAAACAAAAAATAAATAAAATAAATTCATTATATAAATATATAT‑TATAATATATaa                                                                                                                                >  2:2926196/1‑128 (MQ=255)

 caaatgaacttaaaattgtaattaactttttcattttacacaccccttattaaaaaataaaatacttgttacatacgattcaaaacatatataacatacattcatTATATATATATATAT‑ATATATaa                                                                                                                                <  2:1955123‑M1/23‑1 (MQ=255)

 caaatgaacttaaaattgtaattaactttttcattttacacaccccttattaaaaaataaaatacttgttacatacgattcaaaacatatataacatacattcatTATATATATATATAT‑ATATATaa                                                                                                                                <  2:7134601‑M1/23‑1 (MQ=255)

 caaatgaacttaaaattgtaattaactttttcattttacacaccccttattaaaaaataaaatacttgttacatacgattcaaaacatatataacatacattcatTATATATATATATAT‑ATATATaa                                                                                                                                >  1:3500658‑M1/106‑128 (MQ=255)

 caaatgaactaaaaattgtaattaactatttcattttacacaccccttattaaaaaataaaatacttgttacatacgattcaaaacatatataacatacattcatTATATATATATATAT‑ATATATaa                                                                                                                                >  1:7196353‑M1/106‑128 (MQ=255)

 aaaattaatttaaatttttaattaacttttttattttacacatacctttttaaaaaataaaatacttgttacatacgattcaaaacatatataacatacattaatTATATATATATATTT‑ATATATaa                                                                                                                                >  2:647820‑M1/106‑128 (MQ=255)

    atgaacttaaaattgtaattaactttttcattttacacaccccttattaaaaaataaaatacttgttacatacgattcaaaacatatataacatacattcattatatatatatatat‑atatatagaaa                                                                                                                             <  1:5436955‑M1/26‑5 (MQ=255)

    atgaacttaaaattgtaattaactttttcattttacacaccccttattaaaaaataaaatacttgttacatacgattcaaaacatatataacatacattcatTATATATATATATAT‑ATATATaattc                                                                                                                             <  1:2955264‑M1/26‑3 (MQ=255)

     tgaacttaaaattgtaattaactttttcattttacacaccccatattaaaaaataaaatacttgttagatacgattcaaaacatatataacatacattcatTATATATATATATAT‑ATATATAATGCa                                                                                                                            >  1:2228404‑M1/102‑128 (MQ=255)

         cttaaaattgtaattaactttttcattttacacaccccttattaaaaaataaaatacttgttacatacgattcaaaacatatataacatacattcatTATATATATATATAT‑ATATATAATTCAatat                                                                                                                        <  1:3134073‑M1/31‑1 (MQ=255)

         cttaaaattgtaattaactttttcattttacacaccccttattaaaaaataaaatacttgttacatacgattcaaaacatatataacatacattcatTATATATATATATAT‑ATATA‑‑ATGCAATATGt                                                                                                                      <  2:2127346‑M1/31‑1 (MQ=255)

          ttaaaattgttattaaatttttcattttacacacaccttattaaaaaataaaatacttgttacataagattcaaaacatatataacatacattcatTATATATATATATAT‑ATATATAATGCAATATg                                                                                                                       >  2:4570221‑M1/97‑128 (MQ=255)

             aaattgtaattaactttttcattttacacaccccttattaaaaaataaaatacttgttacatacgattcaaaacatatataacatacattcatTATATATATATATAT‑ATATATAATGCAATAtgtta                                                                                                                    <  2:5491685‑M1/35‑3 (MQ=255)

             aaattgtaattaactttttcattttacacaccccttattaaaaaataaaatacttgttacatacgattcaaaaaatatataacatacattcatTATATATATATATAT‑ATATATAATGCAATATGTaa                                                                                                                    >  1:7774718‑M1/94‑128 (MQ=255)

               attgtaattaacttttacattttacacaccccttattaaaaaataaaatacttgtttcatacgatacaaaacataaataaaatacattcatTATATATATATATAT‑ATATATAATTCATTTtgtatat                                                                                                                  <  2:2587442‑M1/37‑4 (MQ=255)

                ttgtaattaactttttcattttacacaccccttattaaaaaataaaatacttgttacatacgattcaaaacatatataacatacattcatTATATATATATATAT‑ATATA‑‑ATTCTATATGTaaattaa                                                                                                               <  2:4010686‑M1/38‑4 (MQ=255)

                 tgtaattaactttttcattttacacaccccttattaaaaaataaaatacttgttacatacgattcaaaacatatataacatacattcatTATATATATATATAT‑ATATATAAAGAAATTTTTAaatta                                                                                                                <  2:3893698‑M1/39‑3 (MQ=255)

                 tgtaattaactttttcattttacacaccccttattaaaaaataaaatacttgttacatacgattcaaaacatatataacatacattcatTATATATATATATAT‑ATATA‑‑ATGCAATATGTAAATGaaa                                                                                                              <  2:6186097‑M1/39‑1 (MQ=255)

                  gtaattaactttttcattttacacaccccttattaaaaaataaaatacttgttacatacgattcaaaacatatataacatacattcatTATATATATATATAT‑ATATATAATTCAATATGTAAATGaa                                                                                                               <  2:6980966‑M1/40‑1 (MQ=255)

                   taattatctttttcatattacacacccataattaaaaaataaaatacttgttacatacgattcaaaacatatataacatacattcatTATATATATATATAT‑ATATATAATGCAATATGTAAATGaaa                                                                                                              >  2:122004‑M1/88‑128 (MQ=255)

                      ttaactttttcattttacacaccccttattaaaaaataaaatacttgttacatacgattcaaaacatatataacatacattcatTATATATATATATAT‑ATATATAATGCAATATGTAAATGAAAata                                                                                                           <  2:3513684‑M1/44‑1 (MQ=255)

                        aactttttttttttacacacaacttattaaaaaataaaataatttttaaatactattcaaaacatatataacatatattcatTATATATATATATAT‑ATATATAATGCAATATGTAAATGAAAATATg                                                                                                         >  2:4400456‑M1/83‑128 (MQ=255)

                         actttttcattttacacaccccttattaaaaaataaaatacttgttacatacgattcaaaacatatataacatacattcatTATATATATATATAT‑ATATA‑‑ATGCAATATGTATATGATAATATGGta                                                                                                      <  2:819792‑M1/47‑1 (MQ=255)

                           tCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATAT‑ATATATAATGCAATATGTAAATGAAAATATGGtata                                                                                                    <  1:6477352/128‑1 (MQ=255)

                                    ttacacaccccttattaaaaaataaaatacttgttacatacgattcaaaacatatataacatacattcatTATATATATATATAT‑ATATA‑‑ATGAAATATGTAAATGAATATATGTTATAATAGCAAcc                                                                                           <  2:9377284‑M1/58‑1 (MQ=255)

                                       tacacaacttattaaaaaatataatacttgttagataagattcaaaacatatataacatacattcatTATATATATATATAT‑ATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCg                                                                                          >  1:2387030‑M1/68‑128 (MQ=255)

                                          accccttattaaaaaataaaatacttgttacatacgattcaaaacatatataacatacattcatTATATATATATATAT‑ATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGttt                                                                                       >  2:9061349‑M1/65‑128 (MQ=255)

                                          accccttattaaaaaataaaatacttgttacatacgattcaaaacatatataacatacattcatTATATATATATATAT‑ATATATAATGAAATATGTAAATGAAAATATTTTATAATAGAAACCGttt                                                                                       <  1:9631430‑M1/64‑1 (MQ=255)

                                            cacttattaaaaaataaaatactttttaaataagattcaaaaaatatataacatacattcatTATATATATATATAT‑ATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTtat                                                                                     >  1:6643042‑M1/63‑128 (MQ=255)

                                               ttattaaaaaataaaatacttgttacatacgattcaaaacatatataacatacattcatTATATATATATATAT‑ATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATaaa                                                                                  <  2:6649611‑M1/69‑1 (MQ=255)

                                                tattaaaaaataaaatacttgttacatacgattcaaaacatatataacatacattcatTATATATATATATAT‑ATATATAATGAAATATTTAAATTAAAATATGGTATAATATCAAACGTTTATAAAg                                                                                 <  2:1387058‑M1/70‑1 (MQ=255)

                                                 attaaaaaataaaatacttgttacatacgattcaaaacatatataacatacattcatTATATATATATATAT‑ATATATAATTCAATATGTAAATGAAAATATGGTATAATATCAACCGTTtataatgt                                                                                <  2:1088163‑M1/71‑4 (MQ=255)

                                                 attaaaaaataaaatacttgttacatacgattcaaaacatatataacatacattcatTATATATATATATAT‑ATATA‑AA‑GCAATATGTAAATGAAAATATGGTATAATAGCAACATTTTATAAAGTaa                                                                              <  2:2259928‑M1/71‑1 (MQ=255)

                                                    aaaaaataaaatacttgttacataagattcaaaacatatataacatacattcatTATATATATATATAT‑ATATA‑‑ATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTaaaaa                                                                           >  1:2113899‑M1/55‑128 (MQ=255)

                                                       aaaataCTTGTTACATACGATTCAAAACATATATAACATACATTCATTATATATATATATATATAT‑A‑AAAAAA‑‑‑AATATATAAAAAAATATATTGTAAAATAACAACCTTATaaaaaataaaaaaataa                                                                      >  1:1900974/1‑127 (MQ=255)

                                                        aaataCTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATAT‑ATATATAATTCAATATGTAAATGAAAATATGTTATAATAGCAACATTTTATAAATTAAAAAAATa                                                                       >  2:7421218/1‑128 (MQ=255)

                                                             cTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATAT‑ATATATAATTCAATATATAAATGAAAATATTGTATAATAGAAACAGATAATAAATAAAAAAAATataaaa                                                                  >  2:4984352/1‑123 (MQ=255)

                                                              ttGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATAT‑ATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACAGTTTATAAAGTAAAAAAATAGTAAat                                                                 >  1:4496829/1‑128 (MQ=255)

                                                              ataattgttatataatattaaaaaaatatataacatacattaatTATATATATATATAT‑ATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTaa                                                                   >  2:7896854‑M1/45‑128 (MQ=255)

                                                               tacttgttacatacgattcaaaacatatataacatacattcatTATATATATATATAT‑ATATATAAAGAAATATTTAAATTAAAATATGGTATAATAGCAAAATTATATAAAGAAAAAAAATAGTaaa                                                                  <  1:577692‑M1/85‑1 (MQ=255)

                                                                acttgttacatacgattcaaaacatttataacatacattcatTATATATATATATAT‑ATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAat                                                                 <  1:5925745‑M1/86‑1 (MQ=255)

                                                                acttgttacatacgattcaaaacatatataacatacattcatTATATATATATATAT‑ATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAat                                                                 >  2:8364570‑M1/43‑128 (MQ=255)

                                                                 cttgttacatacgattcaaaacatatatatcatacattcatTATATATATATATAT‑ATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAata                                                                >  1:1572019‑M1/42‑128 (MQ=255)

                                                                 cttgttacataagattcaaatcatatataaaatacattcatTATATATATATATAT‑ATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAata                                                                >  1:369214‑M1/42‑128 (MQ=255)

                                                                  ttgttacatacgattcaaaacatatataacatacattcatTATATATATATATAT‑ATATATAAAGCAATATGTATATGAAAATATTGTATAATATCAAGCTTTTATAAAGTAAAAAAATAGTAAatat                                                               <  1:9446293‑M1/88‑1 (MQ=255)

                                                                  ttgttacataagattcaaaaaatatataacataaattaatTATATATATATATAT‑ATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAaaaaagtagtatattt                                                               >  2:8066767‑M1/41‑123 (MQ=255)

                                                                   tgttacatacgattcaaaacatatataacatacattcatTATATATATATATAT‑ATATATAATTCAATATGTAAATGAAAATATGTTATAATAGAAACATTTTATAAAGTAAAAAAATATTAAAtata                                                              <  1:1422724‑M1/89‑1 (MQ=255)

                                                                   tgttacatacgattcaaaacatatataacatacattcatTATATATATATATAT‑ATATATAATGCAATATGTAAATGAAAATATGGTATAATAGAAACAGTTTATATAGTAAAAAAATAGAAAAtata                                                              <  1:1000512‑M1/89‑1 (MQ=255)

                                                                    gttacatacgattcaaaacatatataacatacattgatTATATATATATATAT‑ATATATAATGCAATATGTATATTAAAATATGGTATAATAGCAACGGTTTATAAAGTAAAAAAATAGTAAatataa                                                             <  2:1611518‑M1/90‑2 (MQ=255)

                                                                     ttacatacgattcaaaacatatataacatacattcatTATATATATATATAT‑ATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATAtact                                                            <  1:2768900‑M1/91‑1 (MQ=255)

                                                                       acatacgattcaaaacatatataacatacattcatTATATATATATATAT‑ATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATAtactac                                                          <  2:7726653‑M1/93‑1 (MQ=255)

                                                                        catacgattcaaaacatatataacatacattcatTATATATATATATAT‑ATATATAATGCAATATGTAAATGAAAATATGTTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATactact                                                         <  1:1172538‑M1/94‑1 (MQ=255)

                                                                          taagatataaaatatatataaaatataattatTATATATATATATAT‑ATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTa                                                       >  1:626581‑M1/33‑128 (MQ=255)

                                                                            tCAAAACATATATAACATACATTCATTATATATATATATATATAT‑ATATATAATGCAATATGTAAATGAAAATATGGTATATTAGCAACAGTTTATATAGTAAAAAAATAGTAAATATAGTACTTAtt                                                     >  2:8733445/1‑128 (MQ=255)

                                                                            cgattcaaaacatatataacatacattcatTATATATATATATAT‑ATATATAATGCTATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTAtt                                                     <  1:5067061‑M1/98‑1 (MQ=255)

                                                                                tcaaaacatatataacatacattcatTATATATATATATAT‑ATATATAATGCAATATGTAAATGAAAATATGGTATAATATAAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACt                                                 <  1:839298‑M1/102‑1 (MQ=255)

                                                                                tcaaaacatatataacatacattcatTATATATATATATAT‑ATATA‑‑ATGAAATATGTAAATAAAAATATGGTATAATAGCAACAGTTTATAAAGTAAAAATATATAATATATAATAATTATTTACtaa                                               <  2:6322664‑M1/102‑1 (MQ=255)

                                                                                 caaaacatatataacatacattcatTATATATATATATAT‑ATATATAATTAAATATGTAAATGAAAATATGGTATAATAGCAACCTTATATAAAGTAAAAAAATAGTAAATATACTacttattaaata                                                <  1:8215474‑M1/103‑6 (MQ=255)

                                                                                 caaaacatatataacatacattcatTATATATATATATAT‑ATATATAAAAAAATATGTAAATGAAAATATGGTATAATAGCAACCTTTTATAAATAAAAAAAATATAAAATATACTAATTATATACta                                                <  2:4219444‑M1/103‑1 (MQ=255)

                                                                                  aaaacatatataaaatacattaatTATATATATATATAT‑ATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACtaa                                               >  1:2547749‑M1/25‑128 (MQ=255)

                                                                                   aaacatatataaaataaattcatTATATATATATATAT‑ATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACtaat                                              >  1:3890733‑M1/24‑128 (MQ=255)

                                                                                     acatatataacataaattaatTATATATATATATAT‑ATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACtaataa                                            >  2:921683‑M1/22‑128 (MQ=255)

                                                                                      aatatataacatatattcttTATATATATATATAT‑ATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATaaa                                           >  2:588234‑M1/21‑128 (MQ=255)

                                                                                         atataacatacattcatTATATATATATATAT‑ATATATAATTAAATATGTAAATGAAAATATTTTATAATATCAACATTTTATAAATTAAAAAAATATTAAATATAATACTTATTTACTAATAATATc                                        <  1:9258317‑M1/111‑1 (MQ=255)

                                                                                         atataacatacattcatTATATATATATATAT‑ATATATAATGCAATATGTAAATGAAAATATGGTATAATATCAACCGTTTATAAAGTAAAAAAATAGTAAATATAATACTTATTTACTAATAAAata                                        <  1:4318325‑M1/111‑2 (MQ=255)

                                                                                         atataacatacattcatTATATATATATATAT‑ATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATc                                        <  1:9101756‑M1/111‑1 (MQ=255)

                                                                                         atataacataaatttatTATATAAATATATAT‑ATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATc                                        >  1:8900681‑M1/18‑128 (MQ=255)

                                                                                            atacatTCAT‑‑TATATATATATATATAT‑ATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACAGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTAttt                                   >  2:6803952/1‑128 (MQ=255)

                                                                                            ataaatTTATTATATATATATATATATAT‑ATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTAt                                     <  1:738298/128‑1 (MQ=255)

                                                                                             tacatTCAT‑‑TATATATATATATATAT‑ATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAATTAAAAAAATAATAAATATACTACTTATTTACTAATAAAATATAtttt                                  >  2:2724805/1‑128 (MQ=255)

                                                                                               catacattcatTATATATATATATAT‑ATATA‑‑ATTCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTttta                                <  1:4724853‑M1/117‑1 (MQ=255)

                                                                                                 cattcattatatatatatatatat‑atatataATGCAATATGTAAATTAAAAAATTGTATAATAGCAACAGTTTATAAAGAAAAAAAATATTAAATATACTAATTATATACTAATAAAATATATAttta                                >  2:5112808/8‑128 (MQ=37)

                                                                                                  attcattatatatatatatatat‑atatataATGCAATATGTAAATTAAAATATTTTATAATAGCAACAGTTTATAAAGTAAAAAAATATAAAATATACTACTTTTTTAATAATAAAATATATTtttat                               >  1:8007727/7‑128 (MQ=255)

                                                                                                   cattcatTATATATATATATAT‑ATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTtttatt                              >  2:175963‑M1/8‑128 (MQ=255)

                                                                                                      atgtTATATATATATATAT‑ATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTTTTATTTaa                           <  1:527601‑M1/124‑1 (MQ=255)

                                                                                                       gatTATATATTTATATAT‑ATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTTTTATTTaaa                          >  2:3182997‑M1/4‑128 (MQ=255)

                                                                                                       catTATATATATATATAT‑ATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTTTTATTTaaa                          >  2:8887894‑M1/4‑128 (MQ=255)

                                                                                                        tcatTATATATATATAT‑ATATATAATTAAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTTATAAAATCTATTTTTATTTaaaa                         <  2:4770725‑M1/124‑1 (MQ=255)

                                                                                                         ttatatatatatatat‑atatataAAGAAATATGTAAATGAAAATATGGTATAATATCAACAGTTTATAAAGTAAAAAAATATTAAATATACTAAATATTTACTAATAAAATATATATTAAATTaaaaa                        >  2:3048595/2‑128 (MQ=255)

                                                                                                          TATATATATATATAT‑ATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTTTTATTTaaaaaa                       >  1:3278832‑M1/1‑128 (MQ=255)

                                                                                                          TATATATATATATAT‑ATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTTTTATTTaaaaaa                       >  2:5703998‑M1/1‑128 (MQ=255)

                                                                                                          TATATATATATATAT‑ATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTTTTATTTaaaaaa                       >  1:172192‑M1/1‑128 (MQ=255)

                                                                                                           ATATATATATATAT‑ATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTTTTATTTAAAAAAg                      <  2:9503467‑M1/128‑1 (MQ=255)

                                                                                                           ATATATATATATAT‑ATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTTTTATTTAAAAAAg                      >  1:7011158‑M1/1‑128 (MQ=255)

                                                                                                           ATATATATATATAT‑ATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTTTTATTTAAAAAAg                      >  2:332078‑M1/1‑128 (MQ=255)

                                                                                                            aATATATATATAT‑ATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTTTTATTTAAAAAAGt                     >  1:6092039‑M1/2‑128 (MQ=255)

                                                                                                             atatatatatat‑atatatatATCAATATGTAAATCAAAATATGTTATAATAGCAAGAGTTTATAAAGTAAAAATATATTAAATAAAAAAATTATTATATAATAAAATATATTTTTATTTaaaaaaatt                    >  2:7291215/1‑125 (MQ=255)

                                                                                                              tatatatatat‑atatttaATGCAATATGTAAATGAATATATGGTATAATGGCACCGGTTTTTAATGTAAAATAATATTAAATTAAATAATTTTTTACTAATAAATACTTTTTTTATTAAAAAAATTat                   >  2:3704385/1‑127 (MQ=255)

                                                                                                                 ATATATAT‑ATATATAATGCAATATGTAAATGAATATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTTTTATTTAAAAAAGTAAttt                <  1:8565429‑M1/128‑1 (MQ=255)

                                                                                                                     ATAT‑ATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTTTTATTTAAAAAAGTAATTTGaaa            <  1:6848‑M1/128‑1 (MQ=255)

                                                                                                                      TAT‑ATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTTTTATTTAAAAAAGTAATTTGaaaa           >  1:5604977‑M1/1‑128 (MQ=255)

                                                                                                                      TAT‑ATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTTTTATTTAAAAAAGTAATTTGaaaa           >  1:8733445‑M1/1‑128 (MQ=255)

                                                                                                                      TAT‑ATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTTTTATTTAAAAAAGTAATTTGaaaa           >  2:5348811‑M1/1‑128 (MQ=255)

                                                                                                                       AT‑ATATATAATGCAATATGTAAATGAAAATATTGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTAATAATAAAATCTATTTTTATTTAAAAAAGTAATTTGaaaaa          <  1:7584488‑M1/128‑1 (MQ=255)

                                                                                                                          ATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTTTTATTTAAAAAAGTAATTTGAAAAatt        >  2:604379‑M1/1‑128 (MQ=255)

                                                                                                                           TATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTTTTATTTAAAAAAGTAATTTGAAAAatta       >  1:4093197‑M1/1‑128 (MQ=255)

                                                                                                                              ATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTTTTATTTAAAAAAGTAATTTGAAAAAttatta    >  2:2414191‑M1/1‑128 (MQ=255)

                                                                                                                               TAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTTTTATTTAAAAAAGTAATTTGAAAAATTATTaa   >  2:7568139‑M1/1‑128 (MQ=255)

                                                                                                                               TAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTTTTATTTAAAAAAGTAATTTGAAAAATTATTaa   >  2:8573495‑M1/1‑128 (MQ=255)

ATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCATTATATATATATATATATAT‑ATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTTTTATTTAAAAAAGTAATTTGAAAAATTATTAAA  >  CP016816/311047‑311301

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.