Predicted mutation
evidence seq id position mutation annotation gene description
RA CP016816 484,793 A→T intergenic (‑102/+69) JCVSYN2_02220 ← / ← JCVSYN2_02225 hypothetical protein/50S ribosomal protein L7/L12

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816484,7930AT97.9% 12969.4 / 89.8 4378intergenic (‑102/+69)JCVSYN2_02220/JCVSYN2_02225hypothetical protein/50S ribosomal protein L7/L12
Reads supporting (aligned to +/- strand):  ref base A (50/41);  new base T (2017/2268);  total (2069/2309)
Fisher's exact test for biased strand distribution p-value = 1.39e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.67e-01

Only 100 of 4509 total aligned reads displayed.

TTATTTAAAAAATAGTCAAAACTCATAGATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTTAA‑AAAAAAAACAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCTTCAACTAATTTAGCTTTCATTTCTT  >  CP016816/484666‑484914
                                                                                                                               |                                                                                                                          
        aaaaTAGTCAAAACTCATAGATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAat‑ataaaaag                                                                                                                   >  2:5632421/1‑127 (MQ=255)
            tAGTCAAAACTCATAGATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAAt                                                                                                               <  2:2197563/128‑1 (MQ=255)
            tAGTCAAAACTCATAGATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAAt                                                                                                               >  1:8249339/1‑128 (MQ=255)
             aGTCAAAACTCATAGATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATAATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAAtt                                                                                                              >  1:8759189/1‑128 (MQ=255)
               tCAAAACTCATAGATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTaa                                                                                                            <  1:9447803/128‑1 (MQ=255)
                cAAAACTCATAGATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTaaa                                                                                                           <  2:8169771/128‑1 (MQ=255)
                 aaaaCTCATAGATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAac                                                                                                          >  1:7860406/1‑128 (MQ=255)
                   aaCTCATAGATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAacac                                                                                                        >  1:1499990/1‑128 (MQ=255)
                   aaCTCATAGATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAacac                                                                                                        >  2:6831305/1‑128 (MQ=255)
                      tCATCGATTTACTCCTTTTATACTTGCACAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAAcacaca                                                                                                     <  2:4203488/128‑1 (MQ=255)
                      tCATAGATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGATCTTAACAACTAAACTAAACTCTAATATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAAcacaca                                                                                                     >  1:3558826/1‑128 (MQ=255)
                           gATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAAc                                                                                                <  1:6621082/128‑1 (MQ=255)
                           gATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAAc                                                                                                <  2:617085/128‑1 (MQ=255)
                            aTTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACt                                                                                               >  1:1677544/1‑128 (MQ=255)
                             tttAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTc                                                                                              <  1:6452384/128‑1 (MQ=255)
                               tAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCAc                                                                                            <  1:3920551/128‑1 (MQ=255)
                               tAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCAc                                                                                            >  2:8662762/1‑128 (MQ=255)
                               tAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACAAAAAAACTCAc                                                                                            >  2:6359364/1‑128 (MQ=255)
                               tAATCCATTTATAGTTTACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACATCTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCAc                                                                                            <  2:8999755/128‑1 (MQ=255)
                                 aTCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCAcca                                                                                          <  2:2833193/128‑2 (MQ=255)
                                 aTCCTTTAATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCAcca                                                                                          <  1:279404/128‑2 (MQ=255)
                                  tCCTTTTATAGTTGACC‑AAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCAccata                                                                                        <  1:5718763/128‑4 (MQ=255)
                                   ccTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCAccata                                                                                        <  1:2637420/128‑4 (MQ=255)
                                       ttATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAAcacaca                                                                                                     <  1:3736782/111‑1 (MQ=255)
                                       ttATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATg                                                                                    <  2:7959519/128‑1 (MQ=255)
                                       ttATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATg                                                                                    >  1:5140019/1‑128 (MQ=255)
                                        tataGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAATCAAGTAAACACAAAAAAACTCACCCATTATgg                                                                                   >  2:2374596/1‑128 (MQ=255)
                                        tataGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCCCCCATTATgg                                                                                   >  1:4805927/1‑128 (MQ=255)
                                        tataGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCCTTATgg                                                                                   >  2:3857849/1‑128 (MQ=255)
                                         ataGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGt                                                                                  <  1:8925739/128‑1 (MQ=255)
                                         ataGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGt                                                                                  <  1:5956000/128‑1 (MQ=255)
                                         ataGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATGTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAACCTCTCCCATTATGGt                                                                                  >  2:7210712/1‑128 (MQ=255)
                                          taGTTGACCAAAAAATAAGATAGAGCATAGCAGCAGCTCTTAACAACTAAACTACACTCGTTTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCCTTTTtgtg                                                                                 >  2:4909790/1‑128 (MQ=255)
                                          taGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTg                                                                                 >  1:2464648/1‑128 (MQ=255)
                                          taGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTg                                                                                 <  1:2141874/128‑1 (MQ=255)
                                           aGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGa                                                                                <  2:701112/128‑1 (MQ=255)
                                            gTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAg                                                                               >  1:2996857/1‑128 (MQ=255)
                                               gACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTTAATATAAAAAGCAATTAAACACACATAAACTCACCCATTATGGTGAGtt                                                                             <  1:6131270/128‑1 (MQ=255)
                                                aCCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATTAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTa                                                                           >  2:2024185/1‑128 (MQ=255)
                                                 ccAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACACATTATGGTGAGTTTaa                                                                          >  1:5514895/1‑128 (MQ=255)
                                                  cAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTaaa                                                                         >  2:1372619/1‑128 (MQ=255)
                                                   aaaaaaTAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATgg                                                                                   >  1:6269829/1‑117 (MQ=255)
                                                    aaaaaTAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTaaaaa                                                                       <  2:8466012/128‑1 (MQ=255)
                                                     aataTAAGATACAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAat                                                                      <  2:8317980/125‑1 (MQ=255)
                                                      aaaTAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAatt                                                                     <  1:2012774/128‑1 (MQ=255)
                                                       aaTCAGATAGATCCTAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGtttttgtgtgt                                                                    <  2:5274136/128‑9 (MQ=255)
                                                          aaGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCCCCCATTATGCTGAGTTTAAAAATTATTc                                                                 >  2:6523258/1‑128 (MQ=255)
                                                           aGATAGAGCATAGCAGCAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCAACCATTATGGTGAGTTTAAAAATAATACa                                                                >  1:4424381/1‑128 (MQ=255)
                                                           aGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATTGTGAGTTTAAAAATTATTCa                                                                >  1:7446714/1‑128 (MQ=255)
                                                             aTAGAGCATAGAAGAAGCTCTTAATAAATAAACTACACTCGATTATTAAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCaaa                                                              <  2:1866564/128‑1 (MQ=255)
                                                               agagCATAGCAGAATCTCTTAAAATCTAAACTACACTCGATTTTTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCaaaaa                                                            <  2:9515501/128‑1 (MQ=255)
                                                                gagCATTGCAGAAGCTCTTAAAAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCAACCATTATGGTGAGTTTAAAAATTATTCAAAAAt                                                           <  1:1148299/128‑1 (MQ=255)
                                                                gagCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCCCCCATTATGGTGAGTTTAAAAATTATTCAAAAAt                                                           >  2:9147204/1‑128 (MQ=255)
                                                                gagCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAAt                                                           >  1:960668/1‑128 (MQ=255)
                                                                gagCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAAt                                                           <  1:414741/128‑1 (MQ=255)
                                                                gagCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAAt                                                           >  2:3011135/1‑128 (MQ=255)
                                                                gagCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCAATTATGGAGAGTATAAAAATTATTCAAAAAt                                                           >  1:762568/1‑128 (MQ=255)
                                                                 agCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGa                                                                                >  2:2667300/1‑106 (MQ=255)
                                                                  gCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAAttt                                                         >  2:3176256/1‑128 (MQ=255)
                                                                  gCATAGCAGAAGCTCTTAACAACTAAACTACACTCGAATATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCAACCATTATGGTGAGTTTAAAAATTATTCAAAAAttt                                                         >  1:230012/1‑128 (MQ=255)
                                                                    aTAGCAGAAGCTCTTACCAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGGGAGTTAAACAATTATACACAAATTTGa                                                       >  2:3338992/1‑128 (MQ=255)
                                                                     tatcaacaactattAACAAAAAAAATAAAATAGATTATTTAAATATAATTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGat                                                      <  2:1072794/116‑1 (MQ=255)
                                                                       gCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTTAT‑ATAAAAAGCAATTAAACACACAAAAACTCCCCCATTATGGTGAGTTTAAAAATTATTCAAAAAGTTGatta                                                    >  1:4964064/1‑128 (MQ=255)
                                                                       gCAGAAGCTCTTAACAACTAAACTACACTCGAGTATTTAATTATA‑TTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGattat                                                   >  1:5315884/1‑128 (MQ=255)
                                                                        cAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGattat                                                   <  1:6985721/128‑1 (MQ=255)
                                                                        cAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAAATAAACACACAAAAACTCACCCATTATGGTGAGATTAAAAATTATTCAAAAAATTGattat                                                   >  2:7775034/1‑128 (MQ=255)
                                                                             gCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACAAAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTaa                                              <  2:6679948/128‑1 (MQ=255)
                                                                              ctctTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTaaa                                             <  2:5468575/128‑1 (MQ=255)
                                                                                     caacTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTg                                      >  2:2507612/1‑128 (MQ=255)
                                                                                      aactaaactaCACTCGATTATTTAATTTTATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTCAGTTTAAATATTATTCAAAAAATTGATTATTTTATATCAATTgc                                     >  2:7603006/1‑127 (MQ=255)
                                                                                      aactaaactaCACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGa                                     >  1:844362/1‑128 (MQ=255)
                                                                                       actaaactaCACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGATTTTATAAATTATTAAAAAATTTGATTATTTTAAATCAATTGaa                                    >  1:4624539/1‑128 (MQ=255)
                                                                                       actaaactaCACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGaa                                    <  1:1321126/128‑1 (MQ=255)
                                                                                        ctaaactaCACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAg                                   >  1:6816993/1‑128 (MQ=255)
                                                                                         taaactaCACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGc                                  >  1:8606459/1‑128 (MQ=255)
                                                                                         taaactaCACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGc                                  >  2:4342147/1‑128 (MQ=255)
                                                                                             ctaCACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAATCTCCa                              >  1:1833001/1‑128 (MQ=255)
                                                                                               acacTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGc                            <  1:3345023/128‑1 (MQ=255)
                                                                                               acacTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGc                            <  2:1546636/128‑1 (MQ=255)
                                                                                                cacTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCt                           <  1:3183920/128‑1 (MQ=255)
                                                                                                 acTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCtt                          >  1:72766/1‑128 (MQ=255)
                                                                                                 acTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCtt                          <  2:7421787/128‑1 (MQ=255)
                                                                                                  cTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCTTc                         >  1:8039661/1‑128 (MQ=255)
                                                                                                    cGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCCTTATGGTGAGTTTAAAAATTATTCaaaaa                                                            <  2:1672116/91‑1 (MQ=255)
                                                                                                     gATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACTAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCTTCAAc                      <  1:9248770/128‑1 (MQ=255)
                                                                                                     gATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCa                                                                                         >  2:9327825/1‑61 (MQ=255)
                                                                                                         attTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCTTCAACTAAt                  >  2:5767335/1‑128 (MQ=255)
                                                                                                          tttAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCTTCAACTAAtt                 >  2:3519232/1‑128 (MQ=255)
                                                                                                           ttAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCTTCAACTAAttt                <  2:5091758/128‑1 (MQ=255)
                                                                                                           ttAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCTTCAACTAAttt                <  2:1220656/128‑1 (MQ=255)
                                                                                                           ttAATTATATTTTTATTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCTTCAACTAAttt                <  1:1002850/128‑1 (MQ=255)
                                                                                                           taaaTTATATTTTTATTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCTTCAACTAAttt                <  2:4496320/126‑1 (MQ=255)
                                                                                                            tAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTTATTATTTTAAATCAATTTAATCTCCATCTTCAACTAATTTa               >  2:4708003/1‑128 (MQ=255)
                                                                                                            tAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCTTCAACTAATTTa               >  1:4295201/1‑128 (MQ=255)
                                                                                                               ttATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCTTCAACTAATTTAGCt            >  1:7159242/1‑128 (MQ=255)
                                                                                                                 atatTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCTTCAACTAATTTAGCttt          >  1:9100964/1‑128 (MQ=255)
                                                                                                                  tatTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTTTGGTGAGTTAAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCTTCAACTACTTTAGATTTc         >  2:8822140/1‑128 (MQ=255)
                                                                                                                      tttttttaAT‑ATAAAAAGCAATTAATCACACAAAAACTCACACATTATGGTGAGTTTAAAAATTTTTGAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCTTCAACTAATTTAGCTTTCAttt     <  2:3705062/128‑1 (MQ=255)
                                                                                                                      tttttttaAT‑ATAAAAAGCAAATAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCTTCAACTAATTTAGCTTTCAttt     <  2:5978612/128‑1 (MQ=255)
                                                                                                                         ttttaAT‑AAAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCTTCAACTAATTTAGCTTTCATttctt  <  2:4037448/128‑1 (MQ=255)
                                                                                                                               |                                                                                                                          
TTATTTAAAAAATAGTCAAAACTCATAGATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTTAA‑AAAAAAAACAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCTTCAACTAATTTAGCTTTCATTTCTT  >  CP016816/484666‑484914

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑