New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP016816 = 203895388 (0.250)223 (0.130)
+TTT		 80/214 33.5 34.3% intergenic (+279/+179) JCVSYN2_00845/JCVSYN2_00850 lipoprotein/inorganic diphosphatase
?CP016816 203896 = 431 (0.240)intergenic (+280/+178) JCVSYN2_00845/JCVSYN2_00850 lipoprotein/inorganic diphosphatase
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 712 total aligned reads displayed.

TTTAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTA‑TCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑TTG‑‑‑TTTT‑TTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTG‑GATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTG‑AGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGA  >  CP016816/203768‑204023
                                                                                                                                        |                                                                                                                                  
 ttAAATTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAATCCTATGTTCTAGGGTTTTTATTATACTTA‑TCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑TTG‑‑‑t                                                                                                                                    <  2:2393609/128‑1 (MQ=255)
   aaTTTTTTTTATAAAAAAAAATTAAAATTTTTAATTTAAAGCCATTTTTAAAAAAGCCTTTTTTCTAGGCTTTTTATTATAATTA‑TCAACATTACAACGCTTTCAAACTGTATTTTTTA‑GG‑‑C‑TTG‑‑‑ttt                                                                                                                                  <  1:609645/128‑1 (MQ=255)
     ttttttttATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTAA‑ACAACATTACAACGCTTTCAAATTGTATTTTTTA‑GG‑‑C‑TAG‑‑‑tttt‑t                                                                                                                               >  2:3064497/1‑128 (MQ=255)
      tttttttAT‑AAAAAAAATAAAAAATTTTTATTTAAATCAATTTTTTAAAAACCCTATGTTTTATGGTTTTTATTATTATTA‑TTAACATTAAAACCCTTTTAAATGTTATTTTTTT‑TG‑‑G‑ttt‑‑‑tttt‑ttt                                                                                                                             <  2:222041/128‑1 (MQ=255)
           ttATAAAAAAAAATAAAATTTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTA‑TCAACATTACAAAGAATTCAAAGTGTATTTTTTA‑GG‑‑C‑ttt‑‑‑tttt‑ttttttt                                                                                                                         >  1:3726532/1‑128 (MQ=255)
            tttaAAAAAAAATAAAAATTTTTAATTTAAATCAATTTTTATAAAATTCTTTGTTATATGCTTTTTTTTAATATTA‑TCAAAATTACAACGCTTTCAAAGTGTTTTTTTTT‑GG‑‑C‑TTG‑‑‑tttt‑tttttttt                                                                                                                        <  2:1112340/126‑1 (MQ=255)
              taAAAAAAAATAAAAATTTTTCATTTTAAGCCATTTTTTAAAAATCCTATGTTCTAGGGTTTTTATTATAATTA‑TAAAAATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑G‑TTG‑‑‑tttt‑tttttttttt                                                                                                                      <  2:3529135/128‑1 (MQ=255)
               aaaaaaaaaTAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTA‑TCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑TTG‑‑‑tttt‑ttttttttttt                                                                                                                     >  1:2168315/1‑128 (MQ=255)
                aaaaaaaaTAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTA‑TCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GT‑‑C‑TTG‑‑‑tttt‑tttttttttttt                                                                                                                    >  2:1372/1‑128 (MQ=255)
                   aaaaataaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTA‑TCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑TTG‑‑‑tttt‑ttttttttttttttg                                                                                                                 >  2:1039969/1‑125 (MQ=255)
                   aaaaataaaaatTTTTAATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGTCTTTTTATTATACTTA‑TAAACATTACAACTCTTTCAATGTGTATTTTTTA‑GG‑‑C‑TTG‑‑‑tttt‑tttttttttttttat                                                                                                                 >  1:960048/1‑125 (MQ=255)
                    aaaataaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATAATACTTA‑TCAAAATTACAACGCTTTCAAAGTGTATTTTTTA‑GA‑‑C‑TAG‑‑‑‑TTA‑TTTATTTTTTTTGTaaa                                                                                                               >  1:185424/1‑128 (MQ=255)
                       ataaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTA‑TCAACATTACAACGCTTTCAAAGTGTTTTTTTTA‑GG‑‑C‑TTG‑‑‑tttt‑ttttttttttttttttttt                                                                                                             >  1:2074134/1‑121 (MQ=255)
                        taaaattTTTTACTTTTAATCTAATTTTAAAAAATCCAATTGTTTTGGTTTTTTATTTTAATTA‑TGAAACTTTAAACCCTTTTAAATGTTTTTTTTTA‑TG‑‑C‑TTT‑‑‑TTTT‑TTTTTTTTTTTTGTAAAAAt                                                                                                            <  2:2485343/128‑1 (MQ=255)
                         aaaaatTTTTCATTTAAAGCCATTTTTAAAAAAGCCTATGTTATAGGCTTTTTATTATACTTA‑TCAACATTACAACGCTTTCAAAGTGTATTTTTTT‑GG‑‑C‑TTG‑‑‑TTTT‑TTTTTTTTTTTTGTAAAAATa                                                                                                           <  2:3127314/128‑1 (MQ=255)
                         aaaaatTTTTAATTTAACCCCATTTTAAAAAAATCCTTAGTTCAAGGTTTTTTTATAAACTAT‑TCAAAAATACAACCCTTTAAAAGTGTTTTTTTTT‑GG‑‑G‑TTG‑‑‑tttt‑ttttttttttttttgtaaaaa                                                                                                           <  2:2524248/128‑10 (MQ=255)
                          aaaatTTTTTAATAAAACCCATTTGTAAAAAAGCCTTTTTTCTAGGCTTTTTATTATACTTA‑TCAACATTAAAACGCTTTCAAATTGTATTTTTTT‑GG‑‑C‑TTGT‑‑TTTT‑TTTTTTTTTTTTGTAAAAATa                                                                                                           <  1:1265537/128‑1 (MQ=255)
                           aaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTA‑TCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑TTG‑‑‑TTTT‑TTTTTTTTTTTTTTAAAAATaaa                                                                                                         >  1:1019902/1‑128 (MQ=255)
                            aatTTTTAATATAAAGCAATTTGTAAAAAAGCCTATGTTCTTGGCTTTTTAATATAATTA‑TAAAAATTACAACGCTTTAAAATTTTATTTTTTT‑GG‑‑C‑TTGT‑‑TTTT‑TTTTTTTTTTTTGTAAAAATaaa                                                                                                         <  2:3724049/128‑1 (MQ=255)
                            aatTATTTATTTTAATCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTTTTTTAATTA‑AAAAAATTTCAACGTTTTCAAAGTGTTTTTTTTT‑GG‑‑C‑TTGT‑‑TTTT‑TTTTTTTTTTTTGTAAAAATaaa                                                                                                         <  1:201306/128‑1 (MQ=255)
                             atTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTA‑TCAACATTACAACGCTTTCAAATTGTATTTTTTA‑GT‑‑C‑TTG‑‑‑TTTT‑TTTTTTTTTTTTTTAaaaaaaaatt                                                                                                       >  2:703891/1‑126 (MQ=255)
                             atTTTTAATTTTAATCAATTTTTAAAAATCTCTTTTTTTTATTATTTTTATTTTAATTA‑TATAAATTATAAAGATTTAAAATTGTATTTTTTT‑GG‑‑C‑TTGT‑‑TTTT‑TTTTTTTTTTTTGTAAAAATaaaa                                                                                                        <  1:808656/128‑1 (MQ=255)
                              tttttCATTTAAAGCCATTTGTAAAAAAGCATATGTTCTAGGCTTTTTATTATACTTA‑TCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑TTG‑‑‑TTTT‑TTTTTATTTTTTTTAAAATAAAAAGt                                                                                                      >  1:3857539/1‑128 (MQ=255)
                               ttttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTA‑TCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑TTGTT‑TTTT‑TTTTTTTTTTTTGTAAAAATaaaat                                                                                                       >  1:1559786/1‑127 (MQ=255)
                               ttttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTA‑TCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑TTGT‑‑TTTT‑TTTTTTTTTTTTGTAAAAATAAAAGt                                                                                                      >  1:3474247/1‑128 (MQ=255)
                               ttttAATTTATATCAATTTGTAAAAAATGCTATTTTTTATGATTTTTTTTTTATATA‑TAAAAATTAAAAATCTTTAAAAGTGTATTTTTTA‑TG‑‑C‑TTG‑‑‑TTTT‑TTTTTTTTTTTTGTAAAAATAAAAGTa                                                                                                     <  2:772606/128‑1 (MQ=255)
                                tttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTA‑TCAACATTACAACGCTTACAAAGTGTATTTTTTA‑GG‑‑A‑TTG‑‑‑TTTTATTTTTTTTTTTTTTAAAAAAAAAAATa                                                                                                     >  1:2503232/1‑128 (MQ=255)
                                  gcacttAAAGCCATTTGTAAAAAAGCCTATGTTGTTTTGTTTTTATTAAACTTA‑TCAACATTACAACGCTTTCAAAGTTTATTTTTAA‑GG‑‑C‑TTG‑‑‑TTTT‑TTTTTTTTTTTTGTAAAAATAAAAGTAAGa                                                                                                  <  2:2013230/124‑1 (MQ=255)
                                   cATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTA‑TCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑TTGT‑‑TTTT‑TTTTTTTTTTTTTTAAAAATAATATTAAGa                                                                                                  >  1:3364212/1‑128 (MQ=255)
                                       tAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTA‑TCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑TTGTT‑TTTT‑TTTTTTTTTTTTGTAAAAATAAAAGTAAGAttt                                                                                               >  1:2948319/1‑128 (MQ=255)
                                        aaaGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTA‑TCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑TTGT‑‑TTTT‑TTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTg‑g                                                                                            >  1:3127757/1‑128 (MQ=255)
                                         aatgcATTTGTTAAAAATCCTTTGTTCTATGTTTTTTATTATACTTA‑TCAACATTACAACGCTTTCAAAGTGTTTTTTTTT‑GG‑‑C‑TTGT‑‑TTTT‑TTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTG‑Ga                                                                                           <  1:2890482/124‑1 (MQ=255)
                                         aaGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTA‑TCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑TTG‑‑‑TTTT‑TTTTTTTTTTTTTTAAAAATAAAATTAAATTTTG‑TAt                                                                                          >  1:747519/1‑128 (MQ=255)
                                          tcctttttGTAAAATAG‑CTTTGTTTTAGTTTTTTTTTTTTTCTTATTAAAAATTAAAACGATTTAAATTTGTTTTTTTTT‑GGTTT‑TTT‑‑‑TTTT‑TTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTG‑Ga                                                                                           <  2:3006286/123‑1 (MQ=255)
                                          atacATTTTTAAAAAATCCTATGTTCAATGCTTTTTATTATAATTA‑TAAAAATTACAATTCTTTAAAAGTGTATTTTTTA‑GG‑‑G‑TTGT‑‑TTTT‑TTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTG‑GAt                                                                                          <  2:3161340/125‑1 (MQ=255)
                                            cgaTTTGTAATAAAGCCTATTGTCTAGGTTTTTTTTTATAATTA‑TCAACATTACAACGCTTTGAAATTGTATTTTTTT‑GG‑‑C‑TTGTTTTTTT‑TTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTG‑GAt                                                                                          <  1:3037262/126‑1 (MQ=255)
                                               tttGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTA‑TCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑TTGT‑‑TTTT‑TTTTTTTTTTTTTTAAAAATAAAATTAATAttttgttaatac                                                                                      >  1:457058/1‑119 (MQ=255)
                                                ttttAAAAAAGCCTTTGTTTTTGTGTTTTTATTATAATTA‑TAAACATTAAAACTGTTTTAAAGTGTTTTTTTTT‑GG‑‑T‑TTGTT‑TTTT‑TTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTG‑GATCAAcc                                                                                     <  2:3289409/125‑1 (MQ=255)
                                                   tAAAAAATCATTTGTTCTAGTTGTTTTATTATACTTT‑TAAAAATTAAAACGGTTTTAATTTTTTTTTTTTT‑GG‑‑T‑TTGT‑‑TTTT‑TTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTG‑GATCAACCaaaa                                                                                 <  2:3822296/128‑1 (MQ=255)
                                                    aaaaaaTCCTATTTTTTATGTTTTTTTTTTTATTTA‑TTAAAATTAAAAAGATTTTAAATTTTATTTTTTT‑GG‑‑CTTTT‑‑‑TTTT‑TTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTG‑GATCAACCAAAAc                                                                                <  2:3203549/128‑1 (MQ=255)
                                                     taaaaTCCTATTTTATATGCTTTTTTTTATAATTA‑TAAAAAATACAACTCTTTAAAATTGTATTTTTTA‑TG‑‑C‑TTG‑‑‑‑TTT‑TTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTG‑GATCAACCAAAACtat                                                                             <  1:667577/127‑1 (MQ=255)
                                                     aaaaaGCCTATGTTCTAGGCTTTTTATTATACTTA‑TCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑TTGT‑‑TTTT‑TTTTTTTTTTTTTTTAAAAATAAATTTATATTTGTGATTAACCaaaat                                                                                >  2:3350807/1‑127 (MQ=255)
                                                      aaaaGCCTATGTTCTAGGCTTTTTATTATACTTA‑TCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑TTGT‑‑TTTT‑TTTTTTTTTTTTGTAAAAAAAAAATTAATATTTG‑GAGAAACCaataata                                                                              >  2:1571392/1‑123 (MQ=255)
                                                         aGCCTATGTTCTAGGCTTTTTATTATACTTA‑TCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑TTG‑‑‑TTAT‑TTTTTTTTTTTTTTAAAAATAAAAATAATATTTG‑TATAAACAAAaaataaata                                                                          >  2:874029/1‑127 (MQ=255)
                                                            atagttttttttcTTTTTTTTATATATA‑TCATAATTAAAACGCTTTTATTGTTTTTTTTTTA‑GG‑‑T‑TTT‑‑‑TTTT‑TTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTG‑GATCAACCAAGACTATATCaaa                                                                       <  2:1911727/116‑1 (MQ=255)
                                                             tATGTTCTAGGCTTTTTATTATACTTA‑TCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑TTGT‑‑TTTT‑TTTTTTTTTTTTTTAAAAATAAAATTAATATTTG‑TTTAAACAaaaaattttaataa                                                                       >  1:1790769/1‑118 (MQ=255)
                                                              ttgtttgatggttttttttttATTTA‑TTAAAATTACAACGTTTTAATAGGGTTTTTTTTT‑TG‑‑G‑TTGTT‑TTTT‑TTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTG‑GATCAACCAAAACTATATCaaa                                                                       <  2:3449835/117‑1 (MQ=255)
                                                              aTGTTTTATGGTTTTTATTATATTTT‑TTAAAATTACAAAGCTTTTAAAGTGTTTTTTTTT‑GG‑‑T‑TTGTT‑TTTT‑TTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTG‑GATCAACCAAAACTATATCaaa                                                                       <  2:3377956/128‑1 (MQ=255)
                                                               ttttgtAGGTTTTTTATTATAATTT‑TAAACATTAACATGCTTTAAAATTTTATTTTTTATGA‑‑T‑TTT‑‑‑TTTT‑TTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTG‑GATCAACCAAAACTATATCaaaaa                                                                     <  2:295670/123‑1 (MQ=255)
                                                                gTTTTAGGTTTTTTATTTAACTTT‑TAAAAATTAAAACGCTTTTAAAGTTTATTTTTTA‑GG‑‑T‑TTG‑‑‑TTTT‑TTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTG‑GATCAACCAAAACTATATCaaaaaaa                                                                   <  1:3612962/128‑1 (MQ=255)
                                                                gTTCTAGGCTTTTTATTATACTTA‑TCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑TTG‑‑‑‑‑‑T‑TTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTG‑GATCAACCAAAACTATATCAAAAAAATTa                                                                >  1:364810/1‑128 (MQ=255)
                                                                  tCTAGGCTTTTTATTATACTTA‑TCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑TTGTT‑TTTT‑TTTTTTTTTTTTGTAAAAAAAAAATTAAAAATTT‑AATAAAACAAAAAtaatatagtaaga                                                                   >  1:3555359/1‑117 (MQ=255)
                                                                   atAGGCTTTTTATTATACTTA‑TCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑TTGT‑‑TTTT‑TTTTTTTTTTTTTTAAAAATAAAAGTAAGATTTT‑GATCAACCAAAAATATTTAATAAAAAtt                                                                 >  1:3789067/2‑128 (MQ=255)
                                                                    tAGGCTTTTTATTATACTTA‑TCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑TTG‑‑‑TTTT‑TTTTTTTTTTTTTTAAAAATAAAAGTAAAATTTG‑TATCAACCAAAAAAATAAAAAAAAAATTaa                                                               >  2:3244949/1‑128 (MQ=255)
                                                                    tAGGCTTTTTATTATACTTA‑TCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑TTG‑‑‑TTTT‑TTTTTTTTTTTTGTAAAAATAAAATTAAGATTTG‑TATAAACAAAAAATA‑ATaaaaaaaaaataa                                                              >  1:1304878/1‑123 (MQ=255)
                                                                     aGGCTTTTTATTATACTTA‑TCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑TTGT‑‑TTTT‑TTTTTTTTTTTTGTAAAAATAAAATTAATATTTT‑TATAAACAAAAAATTATTAAAAAAAATTaa                                                               >  1:225883/1‑128 (MQ=255)
                                                                     aGGCTTTTTATTATACTTA‑TCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑TTGT‑‑TTTT‑TTTTTTTTTTTTGTAAAAATAAAATTAAATTTTG‑GAAAAAACAAAAAT‑TATaaaaaaaaattta                                                              >  2:2733910/1‑123 (MQ=255)
                                                                      ggCTTTTTATTATACTTA‑TCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑TTG‑‑‑TTTT‑TTTTTTTTTTTTTTAAAAATAAAAGTAAGATTTT‑GATAAAACAAAACTATATAAAAAAAATTaaaa                                                             >  1:2393138/1‑128 (MQ=255)
                                                                        cTTTTTATTATACTTA‑TCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑TTGT‑‑TTTT‑TTTTTTTTTTTTTTAAAAAAAAAATTAATATTTG‑TATAAACCAAAAATATATAAAAAAAATTaaaaa                                                            >  1:3108883/1‑128 (MQ=255)
                                                                         tttttATTATACTTA‑TCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑TTGT‑‑TTTT‑TTTTTTTTTTTTTTAAAAAAAAAAATTAATTTTT‑GATAAAACAAAAAATTATAAAAAAAAATaaaaaa                                                           >  1:1719103/1‑128 (MQ=255)
                                                                          ttttATTATACTTA‑TCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑TTGT‑‑TTTT‑TTTTTTTTTTTTTTAAAAATTAAAGTAAAATTTT‑AATAAAACAAAACTAAAAAAAAAAAAATaaaaaaa                                                          >  1:2921871/1‑128 (MQ=255)
                                                                          ttttATTATACTTA‑TCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑TTGT‑‑TTTT‑TTTTTTTTTTTTTTAAAAATAAAAATTAGATTTG‑GATAAACCAAAACTATATAAAAAAAATTaaaaaaa                                                          >  1:1961576/1‑128 (MQ=255)
                                                                               ttatACTTA‑TCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑TTGT‑‑TTTT‑TTTTTTTTTTTTTTAAAAATTAAAGTAATATTTT‑GTTAAACAAAAAATTAATCAAAAAAATTAAAAAAAAtagt                                                     >  2:1290488/1‑128 (MQ=255)
                                                                                  taCTTA‑TCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑TTGT‑‑TTTT‑TTTTTTTTTTTTTTAAAAAAAAAAATTAAATTTT‑TATAAAACAAAAATattaaaaaaaaattaaaaaaaaatattta                                                  >  1:1102341/1‑121 (MQ=255)
                                                                                   aCTTA‑TCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑TTGT‑‑TTTT‑TTTTTTTTTTTTTTAAAAATAAAATTAATATTTT‑GTAAAAACAAAAATATATAAAAAAAAAAAAAAAAAAaattttat                                                 >  2:1246433/1‑127 (MQ=255)
                                                                                     ttA‑TCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑TTGT‑‑TTTT‑TTTTTTTTTTTTTTAAAAATAAAAATAAAATTTG‑GATAAACCAAAAATATATAAAAAAAATTAAAAAAAAtatttaattt                                               >  1:2303228/1‑123 (MQ=255)
                                                                                     ttA‑TCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑TTGT‑‑TTTT‑TTTTTTTTTTTTTTAAAAAAAAAATTAAAATTTT‑GAACAAACAAAAAAATAAAAAAAAAAAAAAAAAAAAtagtttatat                                               >  2:530322/1‑125 (MQ=255)
                                                                                      tA‑TCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑TTGT‑‑TTTT‑TTTTTTTTTTTTTTAAAAATAAAAGTAATATTTG‑GATAAAACAAAAATATATAAAAAAAATTAAAAAAAAtattttatttt                                              >  1:3249197/1‑127 (MQ=255)
                                                                                      tA‑TCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑TTGT‑‑TTTT‑TTTTTTTTTTTTTTAAAAATAAAAGGAAGATTTG‑GATCAACCCAAACTATTTCTAAAAATATAAAAtatatatgttttttt                                              >  1:1923292/1‑119 (MQ=255)
                                                                                       a‑TCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑TTGT‑‑TTTT‑TTTTTTTTTTTTGAAAAAATAAAAGTAAGATTTG‑GATAAACCAAAACTATATCAAAAAAATTAAAAAAAAtattttagttta                                             >  2:3556343/1‑126 (MQ=255)
                                                                                             cATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑TTGT‑‑TTTT‑TTTTTTTTTTTTTTAAAAAAAAAAGTAATATTTG‑GATAAACCAAAAATATATCAAAAAAATTAAAAAAAAAATATTagttt‑agttta                                       >  1:420574/1‑127 (MQ=255)
                                                                                                 aCAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑TTGT‑‑TTTT‑TTTTTTTTTTTTTTAAAAATAAAATTAAGATTTT‑GATCAACCAAAAATATATAAAAAAAATTAAAAAAAATATTTTATTTG‑AGTTTCAAAt                                   >  1:1349096/1‑128 (MQ=255)
                                                                                                  cAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑TTGT‑‑TTTT‑TTTTTTTTTTTTTTAAAAATAAAAGTAAGATTTG‑TATCAACCAAAAAAATATAAAAAAAATTAAAAAAAATAGTTTTTTTT‑ATTTTAAAAta                                  >  1:3221693/1‑127 (MQ=255)
                                                                                                  cAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑TTGT‑‑TTTT‑TTTTTTTTTTTTGTAAAAATAAAATTAATATTTG‑GATCAAAAAAAAATAATTAAAATAATTTAAAAAAATTTGTTTTATTG‑TGTTTAAAAtg                                  >  1:2544902/1‑127 (MQ=255)
                                                                                                    aatcTTTAAAATTTTATTTTTTA‑GT‑‑T‑TTT‑‑‑TTTT‑TTTTTTTTTTTTGTATAAATAAAAGTAAGATTTG‑GATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTG‑AGTTTCAAATCTGc                               <  1:3324162/125‑1 (MQ=255)
                                                                                                    aCGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑TTGTT‑TTTT‑TTTTTTTTTTTTTTAAAAATAAAATTAATATTTG‑GATAAACAAAAAATATATAAAAAAAATTAAAAAAAAATTTTTATTTG‑ATTTTAAAAtat                                 >  1:3173796/1‑126 (MQ=255)
                                                                                                    aCGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑TTGT‑‑TTTT‑TTTTTTTTTTTTTTAAAAAAAAAAGTAAAATTTT‑GATCAACCAAAAAAATAAAAAAAAAATTAAAAAAAATATTATAATTT‑AATTTAAAAtaag                                >  1:1426526/1‑125 (MQ=255)
                                                                                                    aCGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑TTGT‑‑TTTT‑TTTTTTTTTTTTGTAAAAATAAAAGTAAAATTTT‑GATCAACAAAAAATATATAAAAAAAATTAAAAAAAAAAGTTTATTTT‑ATTTTCAAATATg                                >  1:1637782/1‑128 (MQ=255)
                                                                                                       cTTTCAAAGTGTATTTTTTA‑GG‑‑C‑TTGT‑‑TTTT‑TTTTTTTTTTTTTTAAAAATAAAAGTAAGATTTG‑TAAAAACAAAAAATATTAAAAAAAAATAAAAAAAAATAATTTATTTA‑AGTTTCAAAACTGAat                             >  1:8577/1‑128 (MQ=255)
                                                                                                           cAAAGTGTATTTTTTT‑TG‑‑C‑TTGT‑‑TTTT‑TTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTG‑GATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTG‑AGTTTCAAATCTGCatatat                         <  1:2995051/128‑1 (MQ=255)
                                                                                                           cAAAGTGTATTTTTTA‑GG‑‑C‑TTGT‑‑TTTT‑TTTTTTTTTTTTTTAAAAATAAAATTAAAATTTG‑GATAAACCAAAAAATTATAAAAAAAATTAAAAAAAAAATTTTATTTG‑ATTTTCaaaaattcataaaa                         >  1:888018/1‑117 (MQ=255)
                                                                                                           cAAAGTGTATTTTTTA‑GG‑‑C‑TTGT‑‑TTTT‑TTTTTTTTTTTTTTAAAAATAAAAATAATATTTT‑GATAAACCAAAAATATATCAAAAAAAATAAAAAAAATATTTTATTTG‑ACTTTAAAATcataataatt                         >  2:1420746/1‑119 (MQ=255)
                                                                                                           cAAAGTGTATTTTTTA‑GG‑‑C‑TTG‑‑‑TTTT‑TTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTG‑GATCACCCAAAACATAAACAAAAAAATTAAAAAAAATAG‑TTATTTGTATTTTCAAATTTGAAtattta                        >  2:3405227/1‑128 (MQ=255)
                                                                                                            aaaGTGTATTTTTTA‑GG‑‑C‑TTGT‑‑TTTT‑TTTTTTTTTTTTGTAAAAATAAAATTAATATTTG‑GTAAAAACAAAAATTTTAAAAAAAAATTAAAAATAATATTTAAGTTG‑ATTTAAAAAAATTCatataaa                        >  2:367485/1‑126 (MQ=255)
                                                                                                                 gtATTTTTTA‑GG‑‑C‑TTGT‑‑TTTT‑TTTTTTTTTTTTTTAAAAAAAAAAGTAATATTTG‑GATAAACCAAAAATATATAAAAAAAATTAAAAAAAATATTTTATTTT‑AATTTAAAATCAGAATATATAATACa                   >  1:2736348/1‑128 (MQ=255)
                                                                                                                  tATTTTTTA‑GG‑‑C‑TTG‑‑‑TTTT‑TTTTTTTTTTTTTTAAAAATAAAAGTAATATTTG‑GATCAACCAAAAATATATAAAAAAAATTAAAAAAAATAGTTTAGTTG‑AGTTTCAAATCTGCATATATATTAaaaa                 >  1:523228/1‑128 (MQ=255)
                                                                                                                       tttA‑GG‑‑C‑TTGTT‑TTTT‑TTTTTTTTTTTTTTAAAAATAAAAATAAGATTTG‑GATCAACCAAAACTATATAAAAAAAATTAAAAAAAATTGTTTTGTTT‑AGTGTAAAATATTCATATATATTAaaaaagt              >  2:288670/1‑125 (MQ=255)
                                                                                                                       tttA‑GG‑‑C‑TTGT‑‑TTTT‑TTTTTTTTTTTTTTAAAAATAAAAGTTATTTTTT‑GTTAAACCAAAAATTTTTAAAAAAAATTTAAAAAAATATTTTTTTTG‑ATTTTAAAAAAAGAAtatatatgaaaaatgaa             >  1:2813252/1‑117 (MQ=255)
                                                                                                                         tA‑GG‑‑C‑TTGT‑‑TTTT‑TTTTTTTTTTTTTTAAAAAAAAAATTAAGATTTG‑GAACAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTATTTG‑ATTTTCAAATATGGAAATATTATTCAAAGGAttt           >  1:3522013/1‑128 (MQ=255)
                                                                                                                              attttttttttttt‑ttttttttttttGTAAAAATAAAAGTAAGATTTG‑GATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTG‑AGTTTCAAATCTGCATATATAGTACAAAGGAAt            <  2:2111016/118‑1 (MQ=255)
                                                                                                                               tttgttttttttt‑ttttttttttttGTAAAAATAAAAGTAAGATTTG‑GATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTG‑AGTTTCAAATCTGCATATATAGTACAAAGGAAtt           <  2:948455/119‑1 (MQ=255)
                                                                                                                                ttttgttttttt‑ttttttttttttGTAAAAATAAAAGTAAGATTTG‑GATCAAACAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTG‑AGTTTCAAATCTGCATATATGGTACAAAGGAAttt          <  2:1866725/120‑1 (MQ=255)
                                                                                                                                ttgtttgttttt‑ttttttttttttGTAAAAATAAAAGTAAGATTTG‑GATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTG‑AGTTTCAAATCTGCATATATAGTACAAAGGAAttt          <  2:3596725/120‑1 (MQ=255)
                                                                                                                                tgtttttttttt‑ttttttttttttGTAAATTTAAAAGTAAGATTTG‑GATCAACAAAAAATATATCAAAAAAATTAAAGAAAATATTTTAGTTG‑AGTTTCAAATCTGCATATATAGTACAAAGGAAttt          <  1:2658873/120‑1 (MQ=255)
                                                                                                                                    g‑‑‑TTTT‑TTTTTTTTTTTTTTAAAAATAAAAGTAATATTTG‑GATAAACCAAAACAAATACAAAAAAATTAAAAAAAATAGTTTAGTTT‑ATTTTAAAATCTTCTAATTTATTACAAAAGTAATTAtttatg   >  1:3424617/1‑123 (MQ=255)
                                                                                                                                      gttttt‑ttttttttttttttAAAAAAAAAAATAAAATTTT‑GAAAAACCAAAAAAATATAAAAAAAAATAAAAAAAAAAATTTAATTT‑ATTTTAAAAAATGCAAATAAAATAAAAAAAAATTTATtata    >  2:460079/3‑128 (MQ=255)
                                                                                                                                      gttttt‑ttttttttttttGTAAAAATAAAAGTAATATTTG‑GATAAACCAAAAATTTATAAAAAAAATTAAAAAAAATAGTTTATTTG‑ATTTTAAAATCTTAATATATATTACAAAGAAATTTTTGAtt    >  1:118436/3‑127 (MQ=255)
                                                                                                                                      gttttt‑ttttttttttttGTAAAAATAAAAGTAAGATTTG‑GATCAACCAAAACTATATCAAAAAAATTAAAAAAAATATTTTATTTT‑AGTTTAAAATATGCATATTTAGTACAAATGAATTTATtata    >  1:1393860/3‑128 (MQ=255)
                                                                                                                                       ttttt‑ttttttttttttGTAAAAATAAAATTAATATTTG‑GATCAACCAAAAATATTTCAAAAAAATTAAAAAAAATAGTTTAGTTG‑AGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAg   <  2:1690301/127‑1 (MQ=255)
                                                                                                                                        tttt‑ttttttttttttGTTAAAATATAAGTAATATTTT‑GATAAAAAAAAAATATATTAATAAAATTAAAAAAAATAGTTTAGTTG‑AGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGa  <  2:629147/128‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                  
TTTAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTA‑TCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑TTG‑‑‑TTTT‑TTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTG‑GATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTG‑AGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGA  >  CP016816/203768‑204023

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.