BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP016816	= 420234	656 (0.420)	247 (0.140) +TTT	65/212	39.2	25.3%	intergenic (‑517/+326)	JCVSYN2_01895/JCVSYN2_01900	30S ribosomal protein S10/tRNA‑Thr
*	?	CP016816	420235 =	734 (0.410)	247 (0.140) +TTT	65/212	39.2	25.3%	intergenic (‑518/+325)	JCVSYN2_01895/JCVSYN2_01900	30S ribosomal protein S10/tRNA‑Thr
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 1107 total aligned reads displayed.

TTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTAAAATTAAAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑‑TTTTA‑TGC‑T‑C‑‑G‑‑TTTTTTTTTTT‑TTTTTT‑‑ACAAAAATATAATTTATTTGATTAA‑ACGTATATTTATGTTT‑AATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAA  >  CP016816/420108‑420362

tttATTAGTTGATATATTAGAAAACAACTAGCACTTTTTTAAAAAATTTTTAATTTAAATAACTGAATTATTTTTCAAATTGTTAAATTATATTCAAATCATTAGGAATTAAACA‑A‑‑TATTA‑TGC‑A‑C‑‑G‑‑t                                                                                                                                      >  2:430303/1‑128 (MQ=255)

  tattaGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAGTTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑‑TTTTA‑TGC‑T‑C‑‑t‑‑ttt                                                                                                                                    >  1:1881850/1‑128 (MQ=255)

  tattaGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑‑TTTTA‑TTC‑T‑C‑‑G‑‑ttt                                                                                                                                    >  1:2247580/1‑128 (MQ=255)

  tattaGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑‑TTTTA‑TGC‑T‑C‑‑G‑‑ttt                                                                                                                                    >  1:3699280/1‑128 (MQ=255)

  tattaGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTATTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑‑TTTTA‑TGA‑T‑A‑‑G‑‑ttt                                                                                                                                    >  1:863408/1‑128 (MQ=255)

    ttaGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATAATTTTCAAATCATTATCTATTAATCA‑A‑‑TTTTA‑TGC‑T‑C‑‑T‑‑ttatt                                                                                                                                  >  1:706498/1‑128 (MQ=255)

           atatatTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑‑TTTTA‑TGC‑T‑C‑‑G‑‑ttttttttttt‑t                                                                                                                          >  2:496988/1‑128 (MQ=255)

            tatatTATAAAAAAAATTTCATTTTTTTAAAAAATTTTTTATTTTAATAATTTATTTTTTTTTAAAATTTTTAAATTATTTTTAAATAATTATATATTAATAA‑A‑‑TTTTT‑TTG‑t‑t‑‑t‑‑ttttttttttt‑tt                                                                                                                         <  2:3789673/128‑1 (MQ=255)

             atatTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑‑TTTTA‑TGC‑T‑C‑‑G‑‑ttttttttttt‑ttt                                                                                                                        >  2:779752/1‑128 (MQ=255)

             atatTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑‑TTTTA‑TGC‑T‑C‑‑G‑‑ttttttttttt‑ttt                                                                                                                        >  1:312274/1‑128 (MQ=255)

                 tAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑‑TTTTA‑TGC‑T‑C‑‑G‑‑ttttttttttt‑ttttttt                                                                                                                    >  2:117766/1‑127 (MQ=255)

                  attaaaaatctaTCACTTTTTTTAAAATTTTTTTATTTTAATAACTTTATTATTTTTAAAATTTTTTAATTTTTTTTAATAAATTATATTATAAATA‑A‑‑TTTTA‑TTC‑T‑G‑‑G‑‑gtttttttttt‑tttttttt                                                                                                                   <  2:1930132/119‑3 (MQ=255)

                       catatatcaatttttttAAAAAATTTTATATT‑TAATAAATTAATTATTTTTAAAATTTTTATAATATTTTAAAAACAATATATTTTATAAA‑A‑‑TTTTA‑TTCTT‑T‑‑T‑‑TTTTTTTTTTT‑TTTTTT‑‑ACaaaaa                                                                                                            <  2:2534135/117‑1 (MQ=255)

                        ctactaGCACTTTTTTAATAATTTTTTAATATTAATAAAAGAATAAATTTTCAAATTATTAAATTATTTTCTAAACAATATCTATTAATCA‑A‑‑TTATA‑TGA‑T‑A‑‑A‑‑TTATATTTTTT‑TTTTTT‑‑AAAAAAat                                                                                                           >  1:805434/1‑128 (MQ=255)

                          actaGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑‑TTTTA‑TGC‑T‑C‑‑G‑‑TTTTTTTTTTT‑TTTTTT‑‑TTaaaaaaaa                                                                                                         >  1:1438241/1‑125 (MQ=255)

                           ctaGCACTATTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑‑TTTTA‑TGC‑T‑C‑‑G‑‑TTTTTTTTTTT‑TTTTTT‑‑Taaaaaaattt                                                                                                        >  2:384312/1‑124 (MQ=255)

                             tttatttttttATAAAATTTTTAATTTTTATAATTTATTTTTTTTTTATATTTTTTATTTTTTTTAAAATAATTATATTTTAATTA‑A‑‑TTTTA‑TTT‑TAT‑‑T‑‑TTTTTTTTTTT‑TTTTTT‑‑ACAAAAATATaa                                                                                                       <  1:1001556/123‑1 (MQ=255)

                             ttaatttttttAAAAATTTTTTATTTTTAATAAATTTATTTTTTTTAAAATTTTTAAATTTTTTTAAAATAATTATATATTAATTA‑A‑‑TTTTA‑TGT‑T‑C‑‑GT‑TTTTTTTTTTT‑TTTTTT‑‑ACAAAAATATaa                                                                                                       <  2:3723562/123‑1 (MQ=255)

                             aGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑‑TTTTA‑TGC‑T‑C‑‑G‑‑TTTTTTTTTTTATTTTTT‑‑AAAAAAAAATaa                                                                                                       >  1:572986/1‑128 (MQ=255)

                             aGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑‑TTTTA‑TGC‑T‑C‑‑G‑‑TTTTTTTTTTT‑TTTTTT‑‑AAAaaaataaaat                                                                                                      >  1:376047/1‑128 (MQ=255)

                             aGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑‑TTTTA‑TGC‑T‑C‑‑G‑‑TTTTTTTTTTT‑TTTTTT‑‑AAAAAAATATAat                                                                                                      >  1:3549736/1‑128 (MQ=255)

                              gCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑‑TTTTA‑TGC‑T‑C‑‑G‑‑TTTTTTTTTTT‑TTTTTa‑‑aaaaaaaataaatt                                                                                                     >  1:2341249/1‑121 (MQ=255)

                              gCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑‑TTTTA‑TGC‑T‑C‑‑G‑‑TTTTTTTTTTT‑TTTTTT‑‑TTAAAAAaatataa                                                                                                     >  1:3314289/1‑125 (MQ=255)

                               cACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑‑TTTTA‑TGC‑T‑C‑‑T‑‑TTTTTTTTTTT‑TTTTTT‑‑Aaaaaaaaaatattt                                                                                                    >  1:997234/1‑120 (MQ=255)

                               cACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑‑TTTTA‑TGC‑T‑C‑‑GT‑TTTTTTTTTTT‑TTTTTT‑‑ACAAAAATATAatt                                                                                                     >  1:3081140/1‑128 (MQ=255)

                                aCTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑‑TTTTA‑TGC‑T‑C‑‑T‑‑TTTTTTTTTTT‑TTTTTT‑‑AAATAAATTAAattta                                                                                                   >  2:1962586/1‑128 (MQ=255)

                                aCTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑‑TTTTA‑TGC‑T‑C‑‑G‑‑TTTTTTTTTTT‑TTTTTT‑‑TTaaaaaaaataaatt                                                                                                   >  2:3297820/1‑119 (MQ=255)

                                aCTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑‑TTTTA‑TGC‑T‑C‑‑G‑‑TTTTTTTTTTT‑TTTTTT‑‑ACAAAAAAATAattta                                                                                                   >  1:194138/1‑128 (MQ=255)

                                 attttttTAAAAATTTTTAATTTTTATAAATTTATTTTTTTTTTAATTTTTTATTTATTTTTAAATTATTTTTTATTTATAA‑A‑‑TTTTA‑TTC‑TAT‑‑T‑‑TTTTTTTTTTT‑TTTTTT‑‑ACAAAAATATAattta                                                                                                   <  1:1121999/127‑1 (MQ=255)

                                  ttttttAAAAAATTTTTAATTTTAATAACTTAATTATTTTTAAAATTTTTAAATTATTTTAAAATAATTATATATTAATAA‑A‑‑TTTTA‑TGC‑T‑C‑‑GT‑TTTTTTTTTTT‑TTTTTT‑‑ACAAAAATATAatttat                                                                                                  <  1:401581/128‑1 (MQ=255)

                                  ttttttAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑‑TTTTA‑TGC‑T‑C‑‑GT‑TTTTTTTTTTT‑TTTTTT‑‑AAAAAAATATAatttat                                                                                                  >  1:1801209/1‑128 (MQ=255)

                                  ttttttAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑‑TTTTA‑TGC‑T‑C‑‑G‑‑TTTTTTTTTTT‑TTTTTT‑‑AAAAAAATATAatttatt                                                                                                 >  1:152281/1‑128 (MQ=255)

                                   tttttAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑‑TTTTA‑TGC‑T‑C‑‑T‑‑TTTTTTTTTTT‑TTTTTT‑‑ATaaaaaaaaataattaat                                                                                                >  1:2433293/1‑116 (MQ=255)

                                   ttttaAAATAATTTTTAATTTTAATAAATTTATTATTTTTAAAATTGTTTAATTATTTTCAAATAATTATATATTAATCA‑A‑‑TTTTA‑TGC‑T‑C‑‑GTTTTTTTTTTTTT‑TTTTTT‑‑ACAAAAATATAatttat                                                                                                  <  1:460245/128‑1 (MQ=255)

                                       tAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑‑TTTTA‑TGC‑T‑C‑‑G‑‑TTTTTTTTTTT‑TTTTTT‑‑AAAAAAAAAAAAAttattttatt                                                                                            >  1:2682449/1‑128 (MQ=255)

                                       tAAAAAATTTTTAATTTTAATAAATGAATTATTTTTAAAATTGTTTAATTATTTTAAAATTAATATATATTAATAA‑A‑‑TTTTA‑TGC‑T‑A‑‑G‑‑TTTTTTTTTTT‑TTTTTT‑‑ACAAAAATATAATTTATTTGAtt                                                                                            <  2:3646502/128‑1 (MQ=255)

                                        aaaaaaTTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑‑TTTTA‑TGC‑T‑C‑‑G‑‑‑‑‑‑‑TTTTTT‑TTTTTT‑‑ACAAAAATATAATTTATTTGATTAA‑ACGt                                                                                     >  2:274674/1‑128 (MQ=255)

                                        aaaaaaTTTTTAATTTTAATAAATTAATTATTTTTTAAATTTTTAAATTATTTTAAAATAATTTTATATTAATAA‑A‑‑TTTTT‑TTC‑T‑C‑‑GT‑TTTTTTTTTTT‑TTTTTT‑‑ACAAAAATATAATTTATTTGAtt                                                                                            <  1:1360971/128‑1 (MQ=255)

                                           aaaTTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑‑TTTTA‑TGC‑T‑C‑‑GT‑TTTTTTTTTTT‑TTTTTT‑‑ACAAAAATATAATTTATTTTATTaa‑a                                                                                        >  2:1085093/1‑128 (MQ=255)

                                            aaTTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑‑TTTTA‑TGC‑T‑C‑‑GT‑TTTTTTTTTTT‑TTTTTT‑‑AAAAAAATATAATTTATTTTATTAA‑Ac                                                                                       >  1:3259139/1‑128 (MQ=255)

                                                  taattttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑‑TTTTA‑TGC‑T‑C‑‑G‑‑TTTTTTTTTTT‑TTTTTT‑‑AAAAAAATATAATTTATTTGATTAA‑AATTATAtt                                                                                >  1:2213333/8‑128 (MQ=255)

                                                   aattttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑‑TTTTA‑TGC‑T‑C‑‑GTTTTTTTTTTTTT‑TTTTTT‑‑AAAAAAATAAAATTAATTTTATAAA‑ACgattat                                                                                 >  1:351207/7‑123 (MQ=255)

                                                     tttttatAAATTAATTATTTTTAAAATTTTTAAATTATTTTAAAATTATTATATATTAATTA‑A‑‑TTTTT‑TTC‑T‑A‑‑GT‑TTTTTTTTTTT‑TTTTTT‑‑ACAAAAATATAATTTATTTGATTAA‑ACGTATATTTa                                                                              <  1:3463384/123‑1 (MQ=255)

                                                     atttaataatTTAATTTTTTTTTAAATTTTTTAATTTTTTTAAAATAATTATATATTAATAA‑A‑‑TTTTATTTT‑T‑T‑‑T‑‑TTTTTTTTTTT‑TTTTTT‑‑ACAAAAATATAATTTATTTGATTAA‑ACGTATATTTa                                                                              <  1:654416/124‑1 (MQ=255)

                                                       ttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑‑TTTTA‑TGC‑T‑C‑‑GT‑TTTTTTTTTTT‑TTTTTT‑‑AAAAAAATATAATTTATTTTATTAA‑AAGTttatttatt                                                                            >  1:338208/3‑127 (MQ=255)

                                                       ttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑‑TTTTA‑TGC‑T‑C‑‑GT‑TTTTTTTTTTT‑TTTTTT‑‑AAAAAAATATAATTTATTTGATTAA‑AATTATATTTAta                                                                            >  1:3169566/3‑127 (MQ=255)

                                                       ttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑‑TTTTA‑TGC‑T‑C‑‑G‑‑TTTTTTTTTTT‑TTTTTT‑‑AAAAAAATATAATTTATTTGATTAA‑ACTTATATTTATGt                                                                           >  2:2954192/3‑128 (MQ=255)

                                                          atAAATTAATTATTTTTTAATTTTTTTTATTTTTTTAAATTAATTATTTATTAATAT‑T‑‑TTTTA‑TTT‑T‑T‑‑T‑‑TTTTTTTTTTT‑TTTTTT‑‑ACAAAAATATAATTTATTTGATTAA‑ACGTATATTTATGTTt‑a                                                                       <  1:1201845/128‑1 (MQ=255)

                                                           aaaattaaTTATTTTTTAAATTTTTTAATTATTTTAAAATTATTTTTTTTTTATAA‑A‑‑TTTTT‑TTT‑T‑A‑‑GTTTTTTTTTTTTT‑TTTTTT‑‑ACAAAAATATAATTTATTTGATTAA‑ACGTATATTTATGttt                                                                         <  2:308909/122‑1 (MQ=255)

                                                               tttttttttttttAAATTTTTTATTTTTTTTTAAATAAATTTTTTTTAATTA‑AT‑TTTTT‑TAT‑T‑T‑‑T‑‑TTTTTTTTTTT‑TTTTTT‑‑ACAAAAATATAATTTATTTGATTAA‑ACGTATATTTATGTTt‑aataa                                                                   <  2:655185/121‑1 (MQ=255)

                                                               tttattaatTTTTAAATTTTTAAATTATTTTAAAATAATTATATATAAATAA‑A‑‑TTTTA‑TTT‑T‑C‑‑GT‑TTTTTTTTTTT‑TTTTTT‑‑ACAAAAATATAATTTATTTGATTAA‑ACGTATTTTTAttaaacataa                                                                    <  1:1619812/125‑10 (MQ=255)

                                                                  attattTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑‑TTTTA‑TGC‑T‑C‑‑GTTTTTTTTTTTTT‑TTTTTT‑‑AAAAAAAAATATTTTTTTTTATTAA‑AATAATA‑TTATTTTT‑AATaaaaa                                                                >  2:922447/1‑128 (MQ=255)

                                                                  attattTTTAAAATTTTTAAATTATTTTAAAATAATTATTTAATAATCA‑A‑‑TTTTA‑TTC‑T‑CTTT‑‑TTTTTTTTTTT‑TTTTTT‑‑ACAAAAATATAATTTATTTGATTAA‑ACGTATATTTATGTTT‑AATaaaa                                                                 <  2:2901855/128‑1 (MQ=255)

                                                                   ttttttttAAAATTTTTAAATTATTTTAAAATTATTATTTTTTAATTA‑A‑‑TTTTA‑TGT‑T‑T‑‑T‑‑TTTTTTTTTTT‑TTTTTT‑‑ACAAAAATATAATTTATTTGATTAA‑ACGTATATTTATGTTT‑AATAAAAATg                                                              <  2:221987/125‑1 (MQ=255)

                                                                   ttattTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑‑TTTTA‑TGC‑T‑C‑‑GT‑TTTTTTTTTTT‑TTTTTT‑‑AAAAAAATATAATTTATTTTATTAA‑ACGTATATTTATTTTT‑AATAAAAAt                                                               >  2:3528063/1‑128 (MQ=255)

                                                                   ttattTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑‑TTTTA‑TGC‑T‑C‑‑GT‑TTTTTTTTTTT‑TTTTTT‑‑AAAAAAATAAAATTTATTTTATTAA‑AATTATATTTATTTTT‑AATAAAAAt                                                               >  1:2593750/1‑128 (MQ=255)

                                                                   ttattTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑‑TTTTA‑TGC‑T‑C‑‑G‑‑TTTTTTTTTTT‑TTTTTT‑‑AAAAAAATATAATTTATTTAATTAA‑AGTAATATTATTTTTT‑AATaaaattt                                                              >  1:1672713/1‑125 (MQ=255)

                                                                   ttattTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑‑TTTTA‑TGC‑T‑C‑‑G‑‑‑TTTTTTTTTT‑TTTTTT‑‑AAAAAAATATAATTTATTTGATTAA‑ACGTATATTTATGTTT‑AATAAAAATgt                                                             >  2:323974/1‑127 (MQ=255)

                                                                    tattTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑‑TTTTA‑TGC‑T‑C‑‑GT‑TTTTTTTTTTT‑TTTTTT‑‑AAAAAAATATAATTTATTTTATTAA‑ACGTATATTTATTTTT‑AATAAAAAtt                                                              >  1:938046/1‑127 (MQ=255)

                                                                       ttttCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑‑TTTTA‑TGC‑T‑C‑‑GT‑TTTTTTTTTTT‑TTTTTT‑‑AAAAAAATATAATTTATTTTATTAA‑AAGTATATTTATTTTT‑AAAAAAAAtttaa                                                           >  1:3210031/1‑124 (MQ=255)

                                                                       ttttCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑‑TTTTA‑TGC‑T‑C‑‑GT‑TTTTTTTTTTT‑TTTTTT‑‑AAAAAAATAAATTTTATTTTATTAA‑AATTATATTTATTTTT‑AATAAAAAtataa                                                           >  2:3124005/1‑124 (MQ=255)

                                                                        tttAAAATTGTTTAATTATTTTAAAATAATTATTTTTTAATTA‑A‑‑TTTTT‑TTC‑T‑T‑‑G‑‑TTTTTTTTTTT‑TTTTTT‑‑ACAAAAATATAATTTATTTGATTAA‑ACGTATATTTATGTTT‑AATAAAAATGGaaaa                                                         <  1:3344949/128‑1 (MQ=255)

                                                                           cAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑‑TTTTA‑TGC‑T‑C‑‑GT‑TTTTTTTTTTT‑TTTTTT‑‑AAAAAAATTAAATTTATTTTATTAATATTTAT‑TTTATTTTT‑ATTAAATATGAaaaaaa                                                       >  1:1734549/1‑126 (MQ=255)

                                                                             aaTTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑‑TTTTA‑TGC‑T‑C‑‑GT‑TTTTTTTTTTT‑TTTTTT‑‑AAAAAAATATAATTTATTTTATTAA‑AAGTATTTTTATTTTT‑AATAAAAATGTAaaataaa                                                     >  2:2342660/1‑128 (MQ=255)

                                                                             aaTTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑‑TTTTA‑TGC‑T‑C‑‑GT‑TTTTTTTTTTT‑TTTTTT‑‑AAAAAAATATAATTTATTTGATAAA‑ACTTATTTTTATGTTT‑AATAAAAATTAAaaagaaa                                                     >  1:3417502/1‑128 (MQ=255)

                                                                             aaTTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑‑TTTTA‑TGC‑T‑C‑‑GT‑TTTTTTTTTTT‑TTTTTT‑‑AAAAAAATAAAATTTATTTTATTAA‑ACTTAATTTTTTTTTA‑AATAAAAATGAaaaaaaaa                                                     >  2:3442146/1‑128 (MQ=255)

                                                                              ctttttAAATTATTTTAAAATAATTATTTATTAATTA‑ATTTTTTT‑TTT‑T‑T‑‑T‑‑TTTTTTTTTTT‑TTTTTT‑‑ACAAAAATATAATTTATTTGATTAA‑ACTTATATTTATGTTT‑AATAAAAATGGAaaagaaa                                                     <  1:3023189/124‑1 (MQ=255)

                                                                                ttttAAATTTTTTTAAATTTATTATATTTTATTTA‑A‑‑TTTTT‑TTT‑T‑T‑‑T‑‑TTTTTTTTTTT‑TTTTTT‑‑AAAAAAATATAATTTATTTGATTAA‑ACGTATATTTATGTTT‑AATAAAAATGGAAAAGAAAGTGa                                                 <  2:262473/126‑1 (MQ=25)

                                                                                 gTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑‑TTTTA‑TGC‑T‑C‑‑G‑‑TTTTTTTTTTT‑TTTTTTTAACAAAAATATAATTTATTTTATTAA‑ACGTAATTTTATGTTT‑AATAAAAATTTAaaataaatat                                                  >  1:2154759/1‑125 (MQ=255)

                                                                                  ttAAATTATTTTTAAATAATTATTTATTAATTATT‑‑TTTTT‑TGT‑T‑T‑‑T‑‑TTTTTTTTTTT‑TTTTTT‑‑ACAAAAATATAATTTATTTGATTAA‑ACGTATATTTATGTTT‑AATAAAAATGGAAAAGAAAGTGaa                                                <  2:3593671/128‑1 (MQ=255)

                                                                                   tAATTTTTTTTAAAATTATTATTTTTTAATTA‑T‑‑TTTTT‑TTT‑T‑T‑‑GT‑TTTTTTTTTTT‑TTTTTT‑‑AAAAAAATATAATTTATTTGATTAA‑ACGTATATTTATGTTT‑AATAAAAATGGAAAAGAAAGTGAAt                                               <  2:1825501/128‑1 (MQ=255)

                                                                                   tAATTTATATTCAAATAATTAAATATTAATAA‑A‑‑TTTTA‑TTT‑G‑A‑‑T‑‑TTTTTTTTTTT‑TTTTTT‑‑ACTAAAATATAATTTATTTGATTAA‑ACGTATATTTATGTTT‑AATAAAAATGGAAAAGAAAGTGAAtt                                              <  2:2065809/128‑1 (MQ=255)

                                                                                      attattTTCAAATCATTATCTATTAATCA‑A‑‑TTTTA‑TGC‑T‑C‑‑GT‑TTTTTTTTTTT‑TTTTTT‑‑AAAAAAATATAATTTATTTTATTAA‑ACTTATATTTTTTTTT‑AATAAAAATGTAAAATAAATTTAAtttt                                            >  1:2796298/1‑126 (MQ=255)

                                                                                        tattTTTAAATATTTTTTTATTTATTT‑A‑‑TTTTA‑TTT‑T‑T‑‑T‑‑TTTTTTTTTTT‑TTTTTT‑‑ATAATAATATAATTTATTTGATTAA‑AAGTATATTTATGTTT‑AATAAAAATGGAAAAGAAAGTGAATTGTCat                                         <  1:528461/128‑1 (MQ=255)

                                                                                          ttttCAAATCATTATCTATTAATCA‑A‑‑TTTTA‑TGC‑T‑C‑‑G‑‑TTTTTTTTTTT‑TTTTTT‑‑AAAAAAATATAATTTATTTTATTAA‑AAGTATATTTTTGTTT‑AATAAAAATGGAAAATAAAGTTAATTTTAatat                                       >  2:3554152/1‑127 (MQ=255)

                                                                                            ttaaaaTCATTATCTATTAATTA‑A‑‑TTTTA‑TTC‑T‑C‑‑T‑‑TTTTTTTTTTT‑TTTTTT‑‑ACAAAAATATAATTTATTTGATTAA‑ACGTATATTTATGTTT‑AATAAAAATGGAAAAGAAAGTGAATTGTCataata                                     <  1:3803229/125‑1 (MQ=255)

                                                                                              taaattatttattATTAATAA‑A‑‑TTTTA‑TTT‑T‑C‑‑T‑‑TTTTTTTTTTT‑TTTTTT‑‑ACAAAAATATAATTTATTTGATTAA‑ACGTATATTTATGTTT‑AATAAAAATGGAAAAGAAAGTGAATTGTCATaataat                                   <  2:3379122/116‑1 (MQ=255)

                                                                                                aaTCATTATCTATTAATCA‑A‑‑TTTTA‑TGC‑T‑C‑‑GT‑TTTTTTTTTTT‑TTTTTT‑‑AAAAAAATATAATTTATTTTATTAA‑ACTTATATTTATTTTT‑AATAAAAATTTAAAATAAATTTAATTGTAATAAtaatt                                  >  1:3601463/1‑128 (MQ=255)

                                                                                                    aTTATCTATTAATCA‑A‑‑TTTTA‑TGC‑T‑C‑‑G‑‑‑‑‑‑TTTTTTT‑TTTTTT‑‑ACAAAAATATAATTTATTTGATTAA‑ACGTATATTTATGTTT‑AATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAat                         <  2:3161643/128‑1 (MQ=255)

                                                                                                     ttATCTATTAATCA‑A‑‑TTTTA‑TGC‑T‑C‑‑GT‑TTTTTTTTTTT‑TTTTTT‑‑AAAAAAAAAAAATTTTTTTTTTTAA‑AATTTTTTTTTTTTTT‑AATAAAAATTTAAAAAAAATTTAATTTTAAAAAtaattaaatt                             >  1:2094444/1‑128 (MQ=255)

                                                                                                          tATTAATCA‑A‑‑TTTTA‑TGC‑T‑C‑‑GT‑TTTTTTTTTTT‑TTTTTT‑‑ACAAAAAAATAATTTATTTTATTAA‑ACTTATTTTTTTTTTT‑AATAAAAATTAAAAAAAAATTTAATTTTCATAATAATTTAATTaaaaa                        >  1:2747960/1‑126 (MQ=255)

                                                                                                           aTTAATCA‑A‑‑TTTTA‑TGA‑T‑C‑‑G‑‑TTTTTTTTTTT‑TTTTTT‑‑AAAAAAATATAAATTATTTTATTAA‑ACTTATATTTATTTTT‑AATAAAAATGGTAAATAAATTGAATTTTCATATATATTATATTAAatata                      >  2:1714246/1‑128 (MQ=255)

                                                                                                             tAATCA‑A‑‑TTTTA‑TGC‑T‑C‑‑G‑‑TTTTTTTTTTT‑TTTTTTA‑AAAAAAATATATTTTTTTTATTTAA‑AATAATTTTTTTTTTA‑AAAAAAAATGAAAAAAAAATTTAATTTAAAAAAAAATTAAATTAAataaaa                     >  2:1461605/1‑125 (MQ=255)

                                                                                                             tAATCA‑A‑‑TTTTA‑TGC‑T‑C‑‑G‑‑‑TTTTTTTTTT‑TTTTTT‑‑AAAAAAATATATTTTATTTGATTAA‑AGGTAATTTTATGTTT‑AATAAAAATGGAAAAGAAAGAGATTTGAAATAAtaattaaatttattttttac                   >  2:1622229/1‑118 (MQ=255)

                                                                                                                    a‑‑TTTTA‑TGC‑T‑C‑‑GTTTTTTTTTTTTT‑TTTTTT‑‑AAAAAAATTTAATTTAATTTATTAA‑AATTTTTTTTATTTTT‑AATAAAAATGTAAAAAAAATTTAATTTAAATAATAATTTAATTTAATTTATAaaaa                >  2:3032841/1‑128 (MQ=255)

                                                                                                                        tttA‑TGC‑T‑C‑‑GT‑TTTTTTTTTTT‑TTTTTT‑‑ACAAAAATATAATTTATTTTATTAA‑ACTTATATTTATTTTT‑AATAAAAATGTAAAAGAAAGTGAATTTTAATAATAATTTAATTAAATATATAAAAAttt             >  2:857260/1‑126 (MQ=255)

                                                                                                                           a‑TGC‑T‑C‑‑G‑‑TTTTTTTTTTT‑TTTTTTA‑AAAAAAATAAAATTTTTTTTTATAA‑ACTTATTTTTTTTTTT‑AATAAAAATGAAAAAAAAATTAAATTGTAATATTAATTTATTTAAAAATATAAAAATTTaat          >  1:384668/1‑127 (MQ=255)

                                                                                                                             tGC‑T‑C‑‑GT‑TTTTTTTTTTT‑TTTTTT‑‑ACAAAAAAATAAATAAATTTATTAA‑ACGATAATTTTTTTTT‑AATAAAAAAGAAAAATAATGAAAATTTAAATAAAAATATATTTAAAAATAAAAAAATTAAAGt         >  1:1584560/1‑128 (MQ=255)

                                                                                                                             tGC‑T‑C‑‑GT‑TTTTTTTTTTT‑TTTTTT‑‑AAAAAAATATAATTTATTTTATTAA‑ACGTATATTTATGTTT‑AATAAAAATTTAAAATAAAGTTAATTGTAATAATAATTTAATTAAATATATAAAAATTTaatt         >  2:3344510/1‑126 (MQ=255)

                                                                                                                              ttttttattttttttttttttt‑tttttt‑‑ACAAAAATATAATTTATTTGATTAA‑AAGTATATTTATGTTT‑AATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGt             <  2:1346752/117‑1 (MQ=255)

                                                                                                                                atgctcgttttttttttttt‑tttttt‑‑ACAAAAATATAATTTATTTTATTAA‑ACGTATATTTATTTTT‑AATAAAAATGGAAAATAAATTTAATTGTAATAATAAATTAATTAAATATATAAAAATTTaa           >  2:3484960/10‑128 (MQ=255)

                                                                                                                                  tttttttttttttttttt‑tttttt‑‑AAAAAAATATAATTTATTTGATTAA‑AATTATATTTATTTTT‑AATAAAAATTTAAAATAAAGTTAATTGTAATAATAATTTAATTAAATATATAACAATGTAAGt         <  1:108526/121‑1 (MQ=255)

                                                                                                                                   ttttctttttttttttt‑tttttt‑‑ACAAAAATATAATTTATTTGATTAA‑ACGTATATTTATGTTT‑AATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGtt        <  1:2977175/122‑1 (MQ=255)

                                                                                                                                    atg‑‑TTTTTTTTTTT‑TTTTTT‑‑ATAAAAATATAATTTATTTGATTAA‑ACGTATATTTATGTTT‑AATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTa     <  2:2023662/126‑1 (MQ=255)

                                                                                                                                    agg‑‑TTTTTTTTTTT‑TTTTTT‑‑ACAATAATATTATTTATTTGATTAA‑ACGTATATTTATGTTT‑AATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTa     <  1:2886285/126‑1 (MQ=255)

                                                                                                                                      g‑‑TTTTTTTTTTT‑TTTTTT‑‑AAAAAAATATAATTTATTTGATTAA‑ACGTATATTTATTTTT‑AATAAAAATGTAAAAAAAATTTAATTGTAATAAAAATTAAATTAAATATAAAAAAATTTAGTTTTTaaa   >  1:2051140/1‑128 (MQ=255)

                                                                                                                                      cgtttttttttttt‑tttttt‑‑AAAAAAATATAATTTATTTGATTAA‑ACTTATATTTTTGTTT‑AATAAAAATTTAAAATAAAGTTAATTGTAATAATAATTTAATTAATTATATAAAAATTTAATTTTTa     >  1:201189/4‑128 (MQ=255)

                                                                                                                                       gtttttttttttt‑tttttt‑‑AAAAAAATATAATTTATTTTATTAA‑ACGTTTTTTTATTTTT‑AATAAAAATGTAAAATAAATTTATTTTTAAAAATAATTTAATTAAATATATAAAAATTAAAGTTTTaa    >  1:1298578/3‑128 (MQ=255)

                                                                                                                                       gtttttttttttt‑tttttt‑‑AAAAAAATATAATTT‑TTTTTTTAA‑AAGTTTTTTTTTTTTTAAATAAAATTGTAAAATAATTTTATTTTTAAAAAAAATTTAATTAAATTTA‑AAAAATTTTATTTTTaaa   >  1:2532789/3‑128 (MQ=255)

                                                                                                                                         ttttttttttt‑tttttt‑‑AAAAAAATATAATTTATTTTATTAA‑AGGTATATTTATGTTT‑TATAAAAATGGATAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTaaaa  <  2:1268411/128‑1 (MQ=255)

TTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTAAAATTAAAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCA‑A‑‑TTTTA‑TGC‑T‑C‑‑G‑‑TTTTTTTTTTT‑TTTTTT‑‑ACAAAAATATAATTTATTTGATTAA‑ACGTATATTTATGTTT‑AATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAA  >  CP016816/420108‑420362

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.