BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP016816	76,878	0	G	T	35.7%	2290.1 / inf	1408	intergenic (‑127/+58)	JCVSYN2_00300/JCVSYN2_00305	UTP‑‑glucose‑1‑phosphate uridylyltransferase/hypothetical protein
Reads supporting (aligned to +/- strand): ref base G (730/130); new base T (14/463); total (750/658)
Fisher's exact test for biased strand distribution p-value = 0.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 1428 total aligned reads displayed.

TAATATCTCCTTAAAAATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGAT‑AAA‑TTTTTTAAAGAAAAA‑T‑A‑TTACA‑A‑C‑‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTA  >  CP016816/76751‑77006

 aataTCTCCTTAAAAATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGAT‑AAA‑TTTTTTAAAGa                                                                                                                                         >  1:1873106/1‑128 (MQ=255)

 aataTCTCCTTAAAAATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGAT‑AAA‑TTTTTTAAAGa                                                                                                                                         <  1:1325517/128‑1 (MQ=255)

 aataTCTCCTTAAAAATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACACAAATTCACCTTTAAATTCAAATAACATTATATAAAGAT‑AAA‑TTTTTTAAAGa                                                                                                                                         >  1:1647098/1‑128 (MQ=255)

    atCTCCTTAAAAATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGAT‑AAA‑TTTTTTAAAGaaaa                                                                                                                                      <  2:2706939/128‑1 (MQ=255)

    atCTCCTTAAAAATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGAT‑AAA‑TTTTTTAAAGaaaa                                                                                                                                      >  1:3304036/1‑128 (MQ=255)

    atCTCCTTAAAAAATTATATATATTAGTGAACATAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCACCTTTAAATTCAAATAACATTATATAAAGAT‑AAA‑TTTTTTAAAGaaaa                                                                                                                                      <  1:1720722/128‑1 (MQ=255)

     tctcCTTAAAAATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGAT‑AAA‑TTTTTTAAAGaaaaa                                                                                                                                     >  1:1033231/1‑128 (MQ=255)

     tctcCTTAAAAATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGAT‑AAA‑TTTTTTAAAGaaaaa                                                                                                                                     >  2:1369265/1‑128 (MQ=255)

      ctcCTTAAAAATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGAT‑AAA‑TTTTTTAAAGAAAAa‑t                                                                                                                                   >  2:1642732/1‑128 (MQ=255)

         cTTAAAAATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATACAAATAACATTATATAAATAT‑AAA‑TTTTTTAAAGAAAAA‑T‑A‑tt                                                                                                                              >  2:2530748/1‑128 (MQ=255)

         cTTAAAAATTTATATATAATAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGAA‑AAA‑TTTTTTAAAGAAAAA‑T‑A‑tt                                                                                                                              <  1:3796047/128‑1 (MQ=255)

          ttAAAAATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGAT‑AAA‑TTTTTTAAAGAAAAA‑T‑A‑TTa                                                                                                                             >  1:2062009/1‑128 (MQ=255)

          ttAAAAATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCACTTTAAATTCAAATAACATTATATAAAGAT‑AAA‑TTTTTTAAAGAAAAA‑T‑A‑TTa                                                                                                                             >  2:2098153/1‑128 (MQ=255)

            aaaaaTTTATATATATTAGTGAACATAAGGATGTATAATACAAATTAATAATAACTGTACAAACCAAATTCCCCTGTAAATTCAAATAACATAATATTAAGAT‑AAA‑AATTTTAAAGAAAAA‑T‑A‑TTACa                                                                                                                           >  2:776506/1‑128 (MQ=255)

             aaaaTTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGAT‑AAA‑TTTTTTAAAGAAAAA‑T‑A‑TAACa‑a                                                                                                                         >  2:204841/1‑128 (MQ=255)

               aaTTTATAAATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGAT‑AAA‑TTTTTTAAAGAAAAA‑T‑A‑TTACA‑A‑C‑‑‑t                                                                                                                   >  1:1594274/1‑128 (MQ=255)

                     tatatatTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGAT‑AAA‑TTTTTTAAAGaaaaa                                                                                                                                     >  1:1078283/1‑112 (MQ=255)

                        atatTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGAT‑AAA‑TTTTTTAAAGAAAAA‑T‑A‑TTACA‑A‑C‑‑‑tttttttttt                                                                                                          >  1:358216/1‑128 (MQ=255)

                         tatTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGAT‑AAA‑TTTTTTAAAGAAAAA‑T‑A‑TTACA‑A‑C‑‑‑ttttttttttt                                                                                                         >  1:3654261/1‑128 (MQ=255)

                          attattGAACATAAGTATGTATAAAAAAAATTAATAATAAATGTACAAACCAAATTTCCCTTTAAAATAAAATAAAATTATATAAATAT‑AAA‑TTTTTTAAACAAAAA‑T‑A‑TTACA‑A‑C‑‑‑tttttttttttt                                                                                                        <  1:1512855/128‑1 (MQ=255)

                          atTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCATTAAAATCAAATAACATTATATAAAGAT‑AAA‑TTTTATAATCAAAAA‑A‑A‑TAACA‑A‑C‑‑‑tttatatatatt                                                                                                        >  2:294763/1‑119 (MQ=255)

                            tAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGAT‑AAA‑TTTTTTAAAGAAAAA‑T‑A‑TAACA‑A‑C‑‑‑ttttatattttttt                                                                                                      >  2:2596270/1‑128 (MQ=255)

                            tAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGAT‑AAA‑TATTTTAAAGAAAAA‑T‑A‑TTACA‑A‑C‑‑‑ttttttttttatta                                                                                                      >  1:1434402/1‑127 (MQ=255)

                             aGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCACTTTAAATTCAAATAACATTATATAAAGAT‑AAA‑TTTTTTAAAGAAAAA‑T‑A‑TTACA‑A‑C‑‑‑tattttttttttttt                                                                                                     >  2:3403357/1‑128 (MQ=255)

                                gAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGAT‑AAA‑TTTTTTAAAGAAAAA‑T‑A‑TTACA‑A‑C‑‑‑tttttttttttttttcta                                                                                                  >  2:1477055/1‑125 (MQ=255)

                                  aCTTTAGGTTGTAAAATACAAATTAATAAAAACTGTACAACCCAAATTCCCCTTTAAATTTAAATAACATTATATAAAGAT‑AAA‑TTTTTTAAATAAAAA‑T‑A‑TTACA‑A‑C‑‑‑ttttttttttttttggaact                                                                                                <  2:466610/128‑7 (MQ=255)

                                  aCTTAAAGATTTATAATAAAAAATAATAAAAACTTTACAAACCAAATTACCCTTTTAAATAAAAAAAAATTATTAAAATAT‑AAA‑ATTTTTAAACTAAAA‑A‑A‑TTACA‑A‑A‑‑‑CTTTTTTTTTTTTTTTGGaa                                                                                                <  1:3517887/128‑1 (MQ=255)

                                    ttAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGAT‑AAA‑TTTTTTAAATAAAAA‑T‑A‑TTACA‑A‑C‑‑‑ttttttttttttttttttaaat                                                                                              >  2:2247165/1‑122 (MQ=255)

                                      aaGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGAT‑AAA‑TTTTTTAAAGAAAAA‑T‑A‑TTACA‑A‑C‑‑‑ttttttttttttttttttaaataa                                                                                            >  1:2391188/1‑120 (MQ=255)

                                        ggATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATAAAAAGAT‑AAA‑TTTTTTAAATAAAAA‑T‑A‑TTACA‑A‑C‑‑‑‑TTTTTTATTTTTTTTGGAACTAACat                                                                                         >  2:3182240/1‑128 (MQ=255)

                                         gATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGAT‑AAA‑TTTTTTAAAGAAAAA‑T‑A‑TTACAGA‑T‑‑‑TTTTTTTTTTTTATTTGGaaaaacaa                                                                                          >  2:3564988/1‑122 (MQ=255)

                                            gTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGAT‑AAA‑TTTTTTAAAGAAAAA‑T‑A‑TTACA‑A‑C‑‑‑TTTTTTTTTTTTTTTTTGAAATAACataaa                                                                                      >  2:1703157/1‑126 (MQ=255)

                                            gTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGAT‑AAA‑TTTTTTAAAGAAAAA‑T‑A‑TTACA‑A‑C‑‑‑TTTTTTTTTTTTTATTTGAAATaaaaaaaa                                                                                      >  1:554936/1‑122 (MQ=255)

                                             tataATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGAT‑AAA‑TTTTTTAAAGAAAAA‑T‑A‑TAACA‑A‑C‑‑‑TTTTTATTTTTTTTTTAAAAAtaaaataaaa                                                                                     >  2:1879732/1‑128 (MQ=255)

                                              taaataCAAATTAAAAATAAATTTAAAAACCAAATTACCCTTTAAATTAAAATAAAATTATAAAAATAT‑AAA‑TTTTTTAAAGAAAAA‑A‑A‑TTAAA‑A‑C‑‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAAt                                                                                    <  1:725287/126‑1 (MQ=255)

                                               taataCAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGAT‑AAA‑TTTTTTAAAGAAAAA‑T‑A‑TTACA‑A‑C‑‑‑TTTTTTTTTTTTTTTT‑TAAATAACAAATAAttt                                                                                  >  1:3172958/1‑128 (MQ=255)

                                               aaataaaaaataataaaaaatGAAAAACCAAAATTCCCATTTAAAATAAAAAAAAATTAAAT‑AATAT‑AAATTTTTTTAAAAAAAAA‑A‑T‑TTAAA‑A‑A‑‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAAtt                                                                                   <  2:2663525/127‑1 (MQ=255)

                                                aataCAAATTAATAATAACTGTACAACCCAACTTCCCCTTTAAATTCAAATAACATTATATAAAGAT‑AAA‑TTTTTTAAATAAAAA‑T‑A‑TTACA‑A‑C‑‑‑TTTTTTTTTTTTTTTTTGAAGAAACaattaatta                                                                                  >  2:2167609/1‑127 (MQ=255)

                                                    cAAATTAATAATAACTTTAAAACCAAAATTCCCATTTAAATTCAAATAAAATTATATAAATAA‑AAA‑TTTTTTAAATAAAAA‑A‑A‑TTACA‑A‑C‑‑‑‑‑TTTTTTTTTTTTTTGGAACTAACATATAATTTTACCaa                                                                            <  1:1003538/128‑1 (MQ=255)

                                                       aTTTATAAAAACGTTATAACAAAAATTACACATTAAATTCAAATTACATTTTATATATTT‑AAA‑TTTTTTAAATAAAAA‑T‑ATTTAAA‑A‑T‑‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCaa                                                                            <  2:1545404/128‑1 (MQ=255)

                                                           aaaataaATGTAAAACCCAAAATCCAATTTAAATTCAAATAAAATTATATAAAGAT‑AAA‑TTTTTTAAAGAAAAA‑T‑A‑TTA‑A‑A‑A‑‑‑ATTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAAttatta                                                                      <  1:1126013/126‑1 (MQ=255)

                                                           aaaaaaacactACAACCCAAATTCCCAATTAAAATCAAATAAAATAAAATAAAGTA‑AAA‑ATTTTTAAAGAAAAA‑T‑A‑TTACA‑A‑C‑‑‑ATTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAattatt                                                                       <  2:439527/118‑1 (MQ=255)

                                                             aataaCTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGAT‑AAA‑TTTTTTAAAG‑AAAA‑T‑A‑TTAAA‑A‑A‑‑‑ATTTTTTTTTTTTTTTTTTAAAAAAATATAAATTTAAAAattatttta                                                                    >  1:2868602/1‑125 (MQ=255)

                                                              ataaATTTACAACCCAAATTCCCCTTTAAATTAAAATAAAATTATAAAAATAT‑AAA‑TTTTTTAAATAAAAA‑T‑T‑TTAAA‑A‑A‑‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGa                                                                    <  2:684310/128‑1 (MQ=255)

                                                                   tGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGAT‑AAA‑TTTTTTAAAGAAAAA‑T‑A‑TTACA‑A‑C‑‑‑TTTTTTTTTTTTTTTTGTAACTAACAAATATTTTTACAAAATATTAGaattta                                                               >  2:3484053/1‑127 (MQ=255)

                                                                      taaagccAAAATACCCTTTAAATTTAAAAAACAATTTATAAAGAT‑AAA‑TTTATTAATTAAAAA‑T‑A‑TTAAA‑A‑C‑‑‑‑‑‑TTTTTTTTTTTTTGGTACTAACATATAATTTTACCAATTATTAGaatttcaatttc                                                         <  1:776506/123‑1 (MQ=255)

                                                                        aaCCCAAATTCCCCTTTAAATTCGAATAACATTATATAAAGAT‑AAA‑TTTTTTAAAGAAAAA‑T‑A‑TTACA‑A‑C‑‑‑TTTTTTTTTTTTTTTTGGAACTAACATTTAATTTTAACAATTATTAaaatttaaattt                                                          >  1:3218220/1‑128 (MQ=255)

                                                                         aCCCAAATTACCCTTTAAATTCAAATAACATTATATAAAGAT‑AAA‑TTTTTTAAAGAAAAA‑T‑A‑TTAAA‑A‑C‑‑‑TTTTTTTTTTTTTTTTGAAAATAAAATATATTTTTACAATTAATTATaattaaaattaa                                                         >  2:1119311/1‑126 (MQ=255)

                                                                           ccAAATTCCCCTTTAAATTCAAATAACATTATATAAAGAT‑AAA‑TTTTTTAAAGAAAAA‑T‑A‑TTAAA‑A‑C‑‑‑TTTTTTTTTTTTTTTTATAAATAAAATAAAATTTTATAATTTTTTATaaattaaatttaaa                                                       >  2:2844087/1‑125 (MQ=255)

                                                                            cAAATTCCCCTTTAAATTCAAATAACATTATATAAAGAT‑AAA‑TTTTTTAAAGAAAAA‑T‑A‑TTACA‑A‑CT‑‑TTTTTTTTTTTTTTTTTTAAATAACATATAATTTTACAAAATATTATAATTTAAATTTaac                                                       >  2:2786326/1‑128 (MQ=255)

                                                                             taaattccatttAAAATAAAATAAAATTTTATAAAAAT‑AAA‑TTTTTTTAAAAAAAA‑T‑A‑TTA‑A‑A‑A‑‑‑AATTTTTTTTTTTTTTGTAACTTACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGa                                                    <  1:935944/119‑1 (MQ=255)

                                                                             aaaTTCCCCTTTAAATTCAAATAACATTATATAAAGAT‑AAA‑TTTTTTAAAGAAAAA‑T‑A‑TTACA‑A‑C‑‑‑TTTTTTTGTTTTTTTTGGAACTAAAAAATAATTTTAACAATTATATTAATTTCAATTACACAg                                                     >  2:197549/1‑128 (MQ=255)

                                                                              aattcaaatttATATTTAAATAAAATTATATAAATAT‑AAA‑TTTTTTAAATAAAAA‑T‑A‑TTAAA‑A‑A‑‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGa                                                    <  1:2801722/120‑1 (MQ=255)

                                                                              aattcaaatttAAATTCAAATAAAATTATATAAATAT‑AAA‑TTTTTTAAATAAAAA‑T‑A‑TTAAA‑A‑A‑‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGa                                                    <  2:536479/120‑1 (MQ=255)

                                                                              aattaaccTTTAAATTAAAATAAAATTATATAAAGAT‑AAA‑TTTTTTAAATAAAAA‑T‑A‑TTACA‑A‑A‑‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGa                                                    <  1:2957/122‑1 (MQ=255)

                                                                              aaTTCCCCTTTAAATTAAAATAAAATTATATAAATAT‑AAA‑TTTTTTAAATAAAAA‑T‑A‑TTAAA‑A‑C‑‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGa                                                    <  1:448002/128‑1 (MQ=255)

                                                                                 taaaatttATATTTAAATTACATTATATAAATTT‑TAA‑ATTTTTAAATAAAAA‑T‑A‑TT‑TA‑A‑A‑‑‑ATTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGaa                                                <  1:2620097/123‑1 (MQ=255)

                                                                                  tcaatttAAAATAAAATAAAATTTAATAAATAT‑AAA‑TTTTTTAAATAAAAA‑T‑A‑ATAAA‑A‑A‑‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGaa                                                <  1:2694697/124‑1 (MQ=255)

                                                                                   cccTTTAAATTCAAATAACATTATATAAAGAT‑AAA‑TTTTTTAAAGAAAAA‑T‑A‑TTACA‑A‑CTT‑TTTTTTTTTTTTTTTTGGAACTAACAAATAATTTTACCAATTATTATAATTTAAATTTAAAAGAtaa                                                 >  1:202279/1‑126 (MQ=255)

                                                                                   ccatttATATACAATTAAGATTAAATAAAGCT‑TAA‑TTTTTTTAACAAAAA‑T‑A‑TTAAA‑A‑C‑‑‑TTTTTTTTTTATTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAAt                                               <  2:1062713/125‑1 (MQ=255)

                                                                                   cacTTTAAATTAAAATAACAATATTATAACAT‑AAA‑TTTTTTAAATAAAAA‑T‑T‑TTAAA‑A‑C‑‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAAt                                               <  2:1158829/126‑1 (MQ=255)

                                                                                   caatttAAATTATAATATTATTTTATAAATAT‑AAT‑TTTTTTAAATAAATA‑A‑A‑TTAAA‑ATT‑‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGaa                                                <  1:3403357/125‑1 (MQ=255)

                                                                                    acTTTAAATTAAAATAA‑ATTTTTTAAAATTAAAA‑TTTTTTAAATAAAAA‑A‑A‑TTAAA‑A‑CT‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAAt                                               <  2:3020835/127‑1 (MQ=255)

                                                                                      tttAAATTAAAATAAAATTATTTAAATTT‑AAA‑TTTTTTAAATAAAAA‑T‑A‑TTA‑A‑A‑A‑‑‑ATTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGAt                                           <  2:608993/128‑1 (MQ=255)

                                                                                        tAAATTCAAATAACATTATATAAAGAT‑AAA‑TTTTTTAAAGAAAAA‑T‑A‑TTACA‑A‑CTTTTTTTTTTTTTTTTTTTTTAAATAACATATAATTTTACAAATTATTAAAATTTAAATTTAAAATATTAAttt                                             >  1:1382778/1‑127 (MQ=255)

                                                                                        tAAATTCAAATAACATTATATAAAGAT‑AAA‑TTTTTTAAAGAAAAA‑T‑A‑TTACA‑A‑C‑‑‑TTTTTTTTTTTTTTTTGTAAATAACATATAATTTTACCAATTATTATAATTTAAATTTAACAGATGAATTGAtt                                          >  1:39520/1‑128 (MQ=255)

                                                                                        tAAATTAAAAATAAATTATAAAAATAT‑TAA‑TTTTTTAAATAAAAA‑T‑A‑TTAAA‑A‑A‑‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGAtt                                          <  1:997795/128‑1 (MQ=255)

                                                                                         aaaTTCAAATAACATTATATAAAGAT‑AAA‑TTTTTTAAAGAAAAA‑T‑A‑TTACA‑A‑C‑‑‑TTTTTTTTTTTTTTTTGAAACAAACATATAATTTTACAAAATTTAAGAATTTCAATTTAACAGATCAATAGCttt                                         >  1:3030559/1‑128 (MQ=255)

                                                                                         aaaTTCAAATAACATTAAATAAAGAT‑AAA‑TTTTTTAAAGAAAAA‑T‑A‑TTACA‑A‑C‑‑‑TTTTTTTTTTTTTTTTGTAAAAAAAATATAATTTAAAAAATTATTATATTTAAAATTTCACAAATTAatttattt                                         >  2:3879891/1‑128 (MQ=255)

                                                                                          aaTTAAAATAAAATTATATAAATAT‑AAA‑TTTTTTAAATAAAAA‑T‑A‑TTAAA‑A‑C‑‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATttc                                        <  1:1942579/128‑1 (MQ=255)

                                                                                           aTTCAAATAACATTATATAAAGAT‑AAA‑TTTTTTAAAGAAAAA‑T‑A‑TTACA‑A‑C‑‑‑TTTTTTTTTTTATTTATGAAATAAAATATAATTTTACAAATTATTAAAATTACAATTAAAAATATTAATTCAtttat                                       >  1:673761/1‑126 (MQ=255)

                                                                                              cAAATAACATTATATAAAGAT‑AAA‑TTTTTTAAAGAAAAA‑T‑A‑TTACA‑A‑C‑‑‑TTTTTTTTTTTTTTTTGGAAATAAAATATAATTTTACCAATTATTATAATTTCAATTAAACAAATTAATTGAtttataag                                    >  2:3691349/1‑123 (MQ=255)

                                                                                               aaaTAAAATTATTAAAATAT‑TAA‑TTTTTTAAATAAAAA‑T‑A‑TTACA‑A‑C‑‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCta                                   <  2:3101860/128‑1 (MQ=255)

                                                                                                aaTAAAATTAAAAAAAGAT‑AAA‑TTTTTAAAACAAAAA‑T‑A‑TTACA‑A‑A‑‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCtaa                                  <  1:483241/128‑1 (MQ=255)

                                                                                                 ataaatttATTTAAATTT‑AAA‑TTTTTTAAATAAAAATT‑A‑TAAAA‑A‑T‑‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCtaa                                  <  1:599298/122‑1 (MQ=255)

                                                                                                 aTAACATTATATAAAGAT‑AAA‑TTTTTTAAAGAAAAA‑T‑A‑TTACA‑A‑C‑‑‑TTTTTTTTTTTTTTTTGGAAAAAACATATAATTTTACCAATTATTAAAATTTAAATTTAAAAAATGAATTTATTTATtatatt                                 >  2:3305790/1‑126 (MQ=255)

                                                                                                 aTAAAATTATATTAATCT‑AAA‑TTTTTTAAATTAAAA‑TAA‑TTAAA‑A‑T‑‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCtaa                                  <  1:2197046/128‑1 (MQ=255)

                                                                                                  aaaCATTATATAAATTT‑AAA‑TTTTTTAAATTAAAA‑T‑A‑TTAAA‑A‑A‑‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCtaata                                <  2:375655/127‑1 (MQ=255)

                                                                                                    aCATTATATAAAGAT‑AAA‑TTTTTTAAAGAAAAA‑T‑A‑TTACA‑A‑C‑‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTATTCTaataat                              >  1:3085465/1‑128 (MQ=255)

                                                                                                    aCATTATATAAAGAT‑AAA‑TTTTTTAAAGAAAAA‑T‑A‑TTACA‑A‑C‑‑‑TTTTTTTTTTTTTTTTGGAAATAAAATATAATTTTACCAATTATTATAATTTAAATTAAACATATTAATTGATTTATTATaataat                              >  2:2397366/1‑128 (MQ=255)

                                                                                                          tattAAGAT‑AAA‑TTTTTTAAATATAAA‑T‑A‑TTAAA‑A‑CT‑‑TTTTTTTTTTTTTTTTTTAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTc                         <  1:3747306/128‑1 (MQ=255)

                                                                                                           ataAAGAT‑AAA‑TTTTTTAAAGAAAAA‑T‑A‑TTACA‑A‑C‑‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACAAATTATTTAAATTTAAATTTCACATATGAATTTATTAATTATAATAAattttata                       >  2:3252970/1‑123 (MQ=255)

                                                                                                             ttaaattttatttttttATATTAAAA‑T‑A‑TTAAA‑A‑T‑‑‑TTTTTTTTTTTTTTTTGGAACTAAAATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTATAATAATTTGTCta                       <  2:1213726/117‑1 (MQ=255)

                                                                                                              aattt‑AAA‑TTTTTTAAATTAAAA‑T‑A‑TTA‑A‑A‑A‑‑‑ATTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCATTTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCtatata                   <  2:92031/124‑1 (MQ=255)

                                                                                                              aaGAT‑AAA‑TTTTTTAAAGAAAAA‑T‑A‑TTACA‑A‑CT‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTAAATTTAACAGATTAATTAATTTATTATAATAATTTTtatata                     >  1:1258025/1‑128 (MQ=255)

                                                                                                               attt‑AAA‑TTTTTTTAATAAAAA‑T‑A‑TTAAA‑A‑T‑‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTAACAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCtatata                   <  1:2311263/125‑1 (MQ=255)

                                                                                                                 aT‑AAA‑TTTTATAATAAAAAA‑T‑A‑TTAAA‑A‑A‑‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTAACAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGa                 <  1:861184/128‑1 (MQ=255)

                                                                                                                    aaa‑TTTTTTAAATTAAAA‑T‑A‑ATAAA‑A‑C‑‑‑ATTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATg               <  2:3628152/128‑1 (MQ=255)

                                                                                                                        ttttttATATAAAAA‑T‑A‑TTA‑A‑A‑A‑‑‑ATTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGtttt           <  1:2137138/128‑1 (MQ=255)

                                                                                                                        ttttttAAAGAAAAA‑T‑A‑TTACA‑A‑C‑‑‑TTTTTTTTTTTTTTTTTGAAATAAAATAAAATTTTACCAATTATTAGAATTTCAATTTAACAAATTAATTGATTTATTCTAATAATTTTTATATATATATtttt            >  1:2775179/1‑128 (MQ=255)

                                                                                                                         tttttAAAAAAAAA‑A‑A‑TAAAA‑A‑A‑‑‑ATTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGtttt           <  2:1318880/128‑1 (MQ=255)

                                                                                                                           tttAAATTAAAA‑T‑T‑TTACA‑A‑C‑‑‑‑‑‑TTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTtata      <  2:2311899/128‑1 (MQ=255)

                                                                                                                           tttAAATAAAAA‑T‑A‑TTAAA‑A‑A‑‑‑TTTTTTTTTTTTTTTTGTAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGtttttt         <  1:2270380/128‑1 (MQ=255)

                                                                                                                           tttAAAGAAAAA‑T‑A‑TTACA‑A‑CT‑‑TTTTTTTTTTTTTTTTTGAAATAAAATATAATTTTACAAATTATTAAAATTTCAATTTAAAAGATTAATTGATTTATTATAATAATTTTTATATATA‑Atttttttt         >  1:2466729/1‑128 (MQ=255)

                                                                                                                           tttAAAGAAAAA‑T‑A‑TTACA‑A‑C‑‑‑TTTTTTTTTTTTTTTTGGAACTAAAATATAATTTTACCAATAATTAAAATTTAAATTTAACATATGAATTGTTTAATAGTAAATATTTGTATAAATATAtttttttt         >  1:1180055/1‑128 (MQ=255)

                                                                                                                           tttAAAGAAAAA‑T‑A‑TTACA‑A‑C‑‑‑TTTTTTTTTTTTTTTTGGAAAAAACATATAATTTTACCAATTATTAGAATTTCAATTTCACTGATGAATTTATTTATTGTATTAATTTGTATATTTATATGtttttt         >  2:1786060/1‑128 (MQ=255)

                                                                                                                            ttAAAGAAAAA‑T‑A‑TTACA‑A‑C‑‑‑‑TTTTTTTTTTTTTTTGGAAATAACATATAATTTTACCAATTATTAAAATTTAAATTTAACAGATGAATTGATTTATTCAAAAAATTTTTAAATATATATGTTTTTtat       >  1:3447252/1‑128 (MQ=255)

                                                                                                                              aaaGAAAAA‑T‑A‑TTACA‑A‑C‑‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACAAATTATTAGAATTTCAATTTAACATATGAATTGATTTATTATAATAATTTATATATATATATGTTTTTtata      >  1:1783337/1‑128 (MQ=255)

                                                                                                                                 gAAAAA‑T‑A‑TTACA‑A‑C‑‑‑TTTTTTTTTTTTTTTTGGAAATAACATAAAATTTTACCAATTATTAGAATTTCAATTTAACAGATGAATTTATTTCTTCTAATAATTTGTAAATATATATATTTTTTatatat   >  1:253214/1‑126 (MQ=255)

                                                                                                                                 gAAAAA‑T‑A‑TTACA‑A‑C‑‑‑TTTTTTTTTTTTTTTTGGAAAAAAAATAAAATTTTACCAATTATTAAAATTTAAATTTAAAATATAAAATAATATATTAAAATAATTTTTTAATAAATATTTTTTTtaattat   >  2:2466339/1‑123 (MQ=255)

TAATATCTCCTTAAAAATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGAT‑AAA‑TTTTTTAAAGAAAAA‑T‑A‑TTACA‑A‑C‑‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTA  >  CP016816/76751‑77006

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`