New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP016816 = 202486203 (0.060)361 (0.110) 82/250 42.4 61.9% intergenic (+264/‑411) JCVSYN2_00840/JCVSYN2_00845 hypothetical protein/lipoprotein
?CP016816 202490 = 242 (0.070)intergenic (+268/‑407) JCVSYN2_00840/JCVSYN2_00845 hypothetical protein/lipoprotein
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 520 total aligned reads displayed.

AATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTTTTAAA‑‑AAAT‑AAAAAAAAAAAAA‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATATT  >  CP016816/202369‑202618
                                                                                                                          |                                                                                                                                    
    ataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAACAAAACC‑‑ATTAAA‑‑AATT‑aaaaaaaa                                                                                                                      >  1:3293296/1‑128 (MQ=255)
        tgttaatgttaatTAAAAATACATAAAATTAATAATTTTTTTAATTTTCTTCCTCGTGATCTATTTTTTTATTTTTTTATCTTAAAAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATT‑aaaaaaaaaaa                                                                                                                   <  1:5486431/127‑1 (MQ=255)
        atttAATGTTAATTAAAAAACAAAAAAATTAAAAATTCATATAATTTATATCCACGTTATATATTTTTTTATTTGTTTATATTAAAAAAA‑AAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATT‑aaaaaaaaaaa                                                                                                                   <  2:669251/126‑1 (MQ=255)
          ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATTTATATACTCAATATCTAATTTTATAAAAAAAAATCTTAAAAAAA‑AAAAAAAAAAAAATAAC‑‑‑AAAAA‑‑AAAT‑aaaaaaaaaaaaa‑a                                                                                                               >  1:5119821/1‑128 (MQ=255)
          ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGAGATCTATTTTTTTATTTTTTTATCTTCACAAAT‑AAAAAAAAAACAATCAC‑‑‑ATAAA‑‑AAAT‑taaaaaaaaaaaa‑a                                                                                                               >  2:6332387/1‑128 (MQ=255)
           tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTAAATTCACAAAT‑AAAAAAAAAAAAATACCC‑‑‑TAAA‑‑AAAT‑aaaaaaaaaaaaa‑aa                                                                                                              >  1:6422160/1‑128 (MQ=255)
           tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAACAATCAACTAaaaaa‑‑aaaa‑aaaaaaaaaaa                                                                                                                   >  2:790719/1‑128 (MQ=255)
           tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCAC‑‑TAAAA‑‑AAAT‑aaaaaaaaaaaaa‑a                                                                                                               >  2:6500030/1‑128 (MQ=255)
            aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTATTTTATTTATTTATATTCACAAAT‑AAAAAAAAAAAAAT‑‑CCAAATAAA‑‑AATT‑aaaaaaaaaaaaa‑aa                                                                                                              >  1:432952/1‑128 (MQ=255)
            aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAACAAACCAC‑‑TTAAA‑‑AATT‑aaaaaaaaaaaaa‑aaa                                                                                                             >  2:1674651/1‑128 (MQ=255)
            aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTAAATATATTTTTATCTTCACAAAA‑AAAAAAAAAAAAATAAAAAT‑‑‑AA‑‑AAAT‑aaaaaaaaaaaaa‑aaa                                                                                                             >  1:4101989/1‑128 (MQ=255)
             aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCAGC‑‑TAAAA‑‑AAAT‑aaaaaaaataaaa‑taa                                                                                                             >  1:6124841/1‑128 (MQ=255)
             aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAACCCC‑‑TTAAA‑‑AATT‑aaaaaaaaaaaaa‑aaa                                                                                                             >  1:493354/1‑128 (MQ=255)
             aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAAAAAC‑‑‑ATAAA‑‑AAAT‑taaaaaaaaaaaa‑aaaa                                                                                                            >  1:7209558/1‑128 (MQ=255)
             aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCATCGTGATCTATTTTTTTATTAGTTTATCTACACAAAT‑AAAAAAAAAACAATAACC‑‑TTAAA‑‑AAAT‑aaaaaaaaaaaaa‑aaa                                                                                                             >  2:5991862/1‑128 (MQ=255)
              tgtaaaataaAAAAACAAAAAATTAAAAAATATAATAATTTATAAACTCGTGATATATTTTTTTATTTTTTAAACATAACAAAA‑AAAAAAAAAAAAATCCCCTTT‑‑AA‑‑AATT‑aaaaaaaaaaaaa‑aaaa                                                                                                            <  2:2189336/121‑1 (MQ=255)
              ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAACACC‑‑TTAAA‑‑AAAT‑aaaaaaaaaaaaa‑aaaa                                                                                                            >  1:1940937/1‑128 (MQ=255)
              ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAACAC‑‑ATTAAA‑‑AATT‑aaaaaaaaaaaaa‑aaaa                                                                                                            >  1:4002740/1‑128 (MQ=255)
              ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAATCCCATT‑‑‑AA‑‑AAAT‑aaaaaaaaaaaaa‑aaaaa                                                                                                           >  1:6263053/1‑128 (MQ=255)
              ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTAATATTTAATTTGTTTATCTTCACAAAA‑AAAAAAAAAACAAACCCCTAaaaaa‑‑aaaa‑aaaaaaaaaaaaa‑aa                                                                                                              >  1:2994449/1‑128 (MQ=255)
               tttaaataaAATACAAATAAATTAATAATTCTAATAATTTAGATCTTCTTGATTTATTTTTTTAATTTTTTTTCTTCACAAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑‑AATT‑taaaaaaaaaaaa‑aaaaa                                                                                                           <  1:6585048/127‑1 (MQ=255)
               gTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCACAAAT‑AAAAAAAAAAAAATAACC‑‑TAAAA‑‑AAAT‑aaaaaaaaaaaaa‑aaaaa                                                                                                           >  1:2405141/1‑128 (MQ=255)
                 taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCACAAAT‑AAAAAAAAAACAATAAACAT‑‑‑AA‑‑AAAT‑aaaaaaaaaaaaa‑aaaaaaaa                                                                                                        >  1:2096177/1‑128 (MQ=255)
                 taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTCTTTATCTTCACAAAT‑AAAAAAAAAACAATCAAC‑‑‑TAAA‑‑AAAT‑taaaaaaaaaaaa‑aaaaaaaa                                                                                                        >  1:2577446/1‑128 (MQ=255)
                 taattaaAATACCATAAAATTAATAATTCTTATAATGTAGATCATATTTATCTATTTTTTTATTTTTTTATATTAAAAAAT‑AAAAAAAAAAAAAAAAAC‑‑TTAAA‑‑AATT‑aaaaaaaaaaaaa‑aaaaaaa                                                                                                         >  2:2674813/1‑128 (MQ=255)
                  aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATT‑aaaaaaaaaaaaa‑aaaaaaaa                                                                                                        >  1:3678447/1‑128 (MQ=255)
                  aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATT‑aaaaaaaaaaaaa‑aaaaaaaa                                                                                                        >  1:6195632/1‑128 (MQ=255)
                  aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATT‑aaaaaaaaaaaaa‑aaaaaaaa                                                                                                        >  2:5526332/1‑128 (MQ=255)
                  aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAACACAATAAAAA‑‑Taaa‑aaaaaaaaaaaaa‑aaaaaa                                                                                                          >  1:1599124/1‑128 (MQ=255)
                  aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAAAAC‑‑‑ATAAA‑‑AAAT‑aaaaaaaaaaaaa‑aaaaaaaaa                                                                                                       >  2:6543912/1‑127 (MQ=255)
                  aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTATTTATTTGTTTATCTACACAAAT‑AAAAAAAAAACAATCCCC‑‑ATAAA‑‑AAAT‑aaaaaaaaaaaaa‑aaaaaaaa                                                                                                        >  1:704151/1‑128 (MQ=255)
                   attaaAATACCATAAACTTAATAATTCTTATAATTTAGATACTCGTGATCTATTTTTTTATTTGTTTATATTAAAAAAT‑AAAAAAAAAAAAATAAAC‑‑TAAAA‑‑AATT‑aaaaaaaaaaaaa‑aaaaaaaaa                                                                                                       >  1:685581/1‑127 (MQ=255)
                   attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCACC‑‑TTAAA‑‑AATT‑aaaaaaaaaaaaa‑aaaaaaaaa                                                                                                       >  1:5734649/1‑127 (MQ=255)
                   ataaaaaaaACAAAAACTTAAAAATTTTTATAATTTATATCCTCGTTTTATATTTTTTTTTTTGTTTATTTTCACAAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑‑AATT‑aaaaaaaaaaaaa‑aaaaaacta                                                                                                       <  1:6058087/125‑4 (MQ=255)
                    ttaaAATACCATAAACTTAATAATTCTTATAATGTAAATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAACCC‑‑AAAAAA‑‑AATT‑aaaaaaaaaaaaa‑aaaaaaaaaa                                                                                                      >  1:1776632/1‑126 (MQ=255)
                    ttaaAATAAAATAAAAATAATAATTATTATAAATTATTTACACGTGATCTATTTTTTTATTTTTTTATCTTCACAAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑AA‑‑AAAT‑TAAAAAAAAAAAA‑AAAAAAAACTa                                                                                                     <  2:5427354/128‑1 (MQ=255)
                    ttaaAAAAACATAAACTTAATAATTATTAATATTTATTTCCTCGTGATCTATTTTTTTTTTTTTTTATCTTAACAAAA‑AAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATT‑aaaaaaaaaaaaa‑aaaaaaaaac                                                                                                      <  2:4332857/128‑3 (MQ=255)
                     taaAATACAATAAAAATAATAATTATTATAATTTAAATCCTATTGATATATTTTTTTATTTTTTTATAATAAAAAAA‑AAAAAAAAAACAAACCCCTT‑‑‑AA‑‑AAAT‑TAAAAAAAAAAAA‑AAAAAAAACTaa                                                                                                    <  2:1262532/128‑1 (MQ=255)
                       aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAATACC‑‑ATTAAA‑‑AATT‑aaaaaaaaaaaaa‑aaaaaaaaaaaaa                                                                                                   >  1:103862/1‑123 (MQ=255)
                       aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCATCACAAAT‑AAAAAAAAAACAATCCCCTTAAAAA‑‑Taaa‑aaaaaaaaaaaaa‑aaaaaaaaaaa                                                                                                     >  1:3795817/1‑125 (MQ=255)
                       aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATATTCACAAAT‑AAAAAAAAAAAAATAACC‑‑TTAAA‑‑AATT‑aaaaaaaaaaaaa‑aaaaaaaaaaaaa                                                                                                   >  1:7027388/1‑123 (MQ=255)
                        aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑‑AATT‑Aaaaaaaaaaaaa‑aaaaaaaaaaaaaa                                                                                                  >  2:3633333/1‑128 (MQ=255)
                        aaTACCATAAACTTAATAATTATTATAATGTATATCCTATTGATATATTTTTTTATTTATTTATATTAAAAAAT‑AAAAAAAAAAAAA‑‑AAAAAATAAA‑‑AATT‑Aaaaaaaaaaaaa‑aaaaaaaaaaaaaa                                                                                                  >  2:5303056/1‑128 (MQ=255)
                          tataaataatataataaTTATTATATTTTATATAATAGTTATATATTTTTATATTTTTTTATCTTAAAAAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑‑AATT‑AAAAAAAAAAAAA‑AAAAAAAACTAAaaac                                                                                                <  2:2585424/117‑1 (MQ=255)
                          taaaaTAAAATTAAAAATTATTTTAATTTATATACTAGTTATATATTTTTTTATTTTTTTATATTAAAAAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑‑AATT‑AAAAAAAAAAAAA‑AAAAAAAACTAAaaac                                                                                                <  2:5651337/124‑1 (MQ=255)
                           aCCATAAATTTAAATATTTTTTTAATTTATATCCTCTGTTTTTATTTTTTTTTTTTTTTTTATTAAAAAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑‑AATT‑AAAAAAAAAAAAA‑AAAAAAAACTAAaaaca                                                                                               <  2:5504374/128‑1 (MQ=255)
                              aTAAAATTAATAATTTTTTTTATTTATTTCCTCTTGTTCTATTTTTTTATTTTTTTATTTTTAAAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AA‑‑AAAT‑‑TAAAAAAAAAAA‑AAAAAAAACTAAAAACAAActc                                                                                          <  1:5851356/128‑1 (MQ=255)
                              aTAAAAATAATAATTCTTAAAATGTTGTTCCTGGTGATTAATTTTTTTATTTGTTTATTATTACAAAA‑AAAAAAAAAAAAATGCCC‑‑TTAAA‑‑AAAT‑AAAAAAAAAAAAATAAAAAAAACTAAaaacaaa                                                                                             <  1:544623/128‑1 (MQ=255)
                                aaaCTTAATAAATTTTATAATTAATATCATCTTTATATATTTTTTTATTTTTTTTTATAAAAAAAA‑AAAAAAAAAACAATCCCCTT‑‑‑AA‑‑AAAT‑‑TAAAAAAAAAAA‑AAAAAAAACTAAAAACAAACTCTa                                                                                        <  2:4434289/128‑1 (MQ=255)
                                  atttAATAATTCTTATAATTTAGATAATCGTGATATATTTTTTTTTTTTTTTATCTTAAAAATT‑AAAAAAAAAAAAATTCCC‑‑TTAAA‑‑AATT‑AAAAAAAAAAAAA‑AAAAAAAACTAAAAACAAACTCTa                                                                                        <  2:3466390/126‑1 (MQ=255)
                                  aattAATAATTCATATAATTTATATACTAGTTATATTTTTTTTTATTTTTTTATATTAAAAAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑‑AATT‑AAAAAAAAAAAAA‑AAAAAAAACTAAAAACAAACTCTa                                                                                        <  2:6375649/126‑1 (MQ=255)
                                  aattAATAAATATTATAATTTATATACTCGTGATAAATTTTTTTATTTTTTTATATTAAAAAAA‑AAAAAAAAAAAAATCCCC‑‑ATAAA‑‑AATT‑AAAAAAAAAAAAA‑AAAAAAAACTAAAAACAAACTCTa                                                                                        <  2:235503/126‑1 (MQ=255)
                                  aataaataatTCTTATAAAAAATATCCTACTTATCTATATTTTTAATTTTTTATATTAAAAAAA‑AAAAAAAAAAAAAACCCC‑‑ATAAA‑‑AATA‑AAAAAAAAAAAAA‑AAAAAAAACTAAAAACAAACTCTa                                                                                        <  2:1991628/124‑1 (MQ=255)
                                    taaataatTCTAAAAATTTAGATCAACTTTATCAATTTTTTTATTTGTTTAAATTAAAAAAA‑AAAAAAAAAAAAAAACCC‑‑TTAAA‑‑AAAT‑AAAAAAAAAAAAA‑AAAAAAAACTAAAAACAAACTCTAtt                                                                                      <  2:4997338/126‑1 (MQ=255)
                                      aataaataTTATAATGTATATAATAGTTATATATTTTTTTATTTTTTTAAATTAAAAAAA‑AAAAAAAAAACAAACCCC‑‑TTAAA‑‑AAAT‑AAAAAAAAAAAAA‑AAAAAAAACTAAAAACAAACTCTATTTc                                                                                    <  2:1856853/128‑1 (MQ=255)
                                       ataatTATTATAATTTTTATACTCATTATATATTTTTTTATTTTTTTAACTTAAAAAAT‑AAAAAAAAAAAAAACCCC‑‑TTAAA‑‑AATT‑AAAAAAAAAAAAA‑AAAAAAAACTAAAAACAAACTCTATTTCt                                                                                   <  2:1063118/128‑1 (MQ=255)
                                             cTTATAATTTTTATCATCGTTATATATTTTTTTATTTTTTTTTATTAAAAAAA‑AAAAAAAAAAAAAACCCCTTAAAAA‑‑TTAA‑AAAAAAAAAAAAA‑AAAAAAAACTAAAAACAAACTCTATTTCTTaaa                                                                               <  1:5984413/128‑1 (MQ=255)
                                                    tttataTCCACCTGATATATTTTTTTATTTTTTTAAATTAAAAAAA‑AAAAAAAAAAAAAAACCC‑CATAAA‑‑AAAT‑AAAAAAAAAAAAA‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCta                                                                       <  2:292629/123‑1 (MQ=255)
                                                         acctgcttctcttatttttttattttttTA‑ATTAAAAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AA‑‑AAAT‑TAAAAAAAAAAAA‑AAAAAAAACTAAAAACAAACTCTCTTTCTTAAAATTCCCTATTATACca                                                               <  2:6840175/116‑1 (MQ=255)
                                                         aaacacGTTATTTATTTTTTTATTTTTTTATATTAAAAAAA‑AAAAAAAAAAAAAACCCCTT‑‑‑AA‑‑AAAT‑TAAAAAAAAAAAA‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                                <  2:905702/123‑1 (MQ=255)
                                                          atatttttatatatttttttattttttAATATTAAAAAAA‑AAAAAAAAAAAAAAAACCTTAAAAA‑‑TTAA‑AAAAAAAAAAAAA‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATtata                                                                  <  2:3363107/117‑1 (MQ=255)
                                                              atttttatATTTTTTTAATTTTTTATATTAAAAAAA‑AAAAAAAAAAAAATACCCATAAAAA‑‑TTAA‑AAAAAAAAAAAAA‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                                              <  2:627366/121‑1 (MQ=255)
                                                                ttataaatttatttAATTTTTTATATAAAAAAAT‑AAAAAAAAAAAAAAAACC‑‑ATAAA‑‑AATA‑AAAAAAAAAAAAA‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                          <  2:1498831/122‑1 (MQ=255)
                                                                 ttttaaTTTTTTTTTTTTTTTAAATTAAAAAAT‑AAAAAAAAAAAAATACCC‑‑TTAAA‑‑AATT‑AAAAAAAAAAAAA‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                                         <  2:5912438/123‑1 (MQ=255)
                                                                   tttATTTTTTTTTTTTTTTTTATTCAAAAAA‑TAAAAAAAAACAATACC‑‑ATTAAA‑‑AAAT‑‑‑‑AAAAAAAAAA‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                                    <  2:4751160/126‑1 (MQ=255)
                                                                   tattttttttttttttttttTATTTATAAATAAAAAAAAAAAAAATAACAATTAAAA‑‑TTAA‑AAAAAAAAAAAAA‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                          <  2:4499749/124‑1 (MQ=255)
                                                                      aTTTTTTTTTTTTTTTATTAGAAAAAAA‑AAAAAAAAAACAAACCCC‑‑TTAAA‑‑AATT‑AAAAAAAAAAAAA‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                                    <  1:6674434/128‑1 (MQ=255)
                                                                       tttttttatttttttaTCTT‑AAAAAA‑AAAAAAAAAAAAATCACC‑‑TTAAA‑‑AAAT‑AAAAAAAAAAAAA‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                                  <  1:5636304/128‑1 (MQ=255)
                                                                       tttttttatttttttaTATTAAAAAAA‑AAAAAAAAAAAAATAACATT‑‑‑AA‑‑AAAT‑TAAAAAAAAAAAA‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                                  <  1:3552116/128‑1 (MQ=255)
                                                                       tttttttatttttttaT‑AAAAAAAAA‑AAAAAAAAAAAAAACCCCTAAAAAA‑‑TAAA‑AAAAAAAAAAAAA‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                                    <  2:1409502/128‑1 (MQ=255)
                                                                        ttttttATTTGTTTAAATTAACAAAA‑AAAAAAAAAAAAATACCCTT‑‑‑AA‑‑AAAT‑TAAAAAAAAAAAA‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                                 <  2:6926563/128‑1 (MQ=255)
                                                                          ttttAATTTTTTATAATAACAAAA‑AAAAAAAAAAAAATACCC‑ATAAAA‑‑ATTA‑AAAAAAAAAAAAA‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                                 <  2:6084564/128‑1 (MQ=255)
                                                                           ttttttttttTATATTAAAAAAT‑AAAAAAAAAAAAAT‑ACCATTAAAA‑‑ATTA‑AAAAAAAAAAAAA‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                                                <  2:3548811/128‑1 (MQ=255)
                                                                           tttatttttttattttAAAAAAT‑AAAAAAAAAAAAATAAACTTT‑‑‑A‑‑AAAT‑‑TAAAAAAAAAAA‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                                             <  1:2686375/128‑1 (MQ=255)
                                                                              aTTTTTTTATATTAAAAAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑‑AAAT‑AAAAAAAAAAAAA‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                                            <  2:2405737/128‑1 (MQ=255)
                                                                               atttttaaTCTTCA‑AAAA‑AAAAAAAAAAAAAACCCACTTTAAA‑‑AATA‑AAAAAAAAAAAAA‑AAAAAATACTAAACACAAACTCTATTTCTTAAAATTCCCTATTATACCACCTTTTATTTTTAAAATaa                                            <  2:3010051/121‑1 (MQ=255)
                                                                                   tttATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATT‑AAAAAAAAAAAAA‑AAAAAAAAATAAAAAAAAACTCTTTTATTTAAAATAACAAATTATACAAAATTTTATTTTTAAAATaataatt                                       >  1:6374040/1‑123 (MQ=255)
                                                                                     ttaattCACAAAT‑AAAAAAAAAA‑AAAAACCATAAAAA‑‑AATA‑AAAAAAAAAAAAA‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                                      <  2:409383/124‑1 (MQ=255)
                                                                                     tattatttaaaaa‑aaaaATAAAAAAATACCC‑TTTAAA‑‑AATT‑AAAAAAAAAAAAA‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                                      <  2:704151/119‑1 (MQ=255)
                                                                                      tatattaaaaaT‑AAAAAAAAAAAAAAAACCTTTAAAATTTAAA‑AAAAAAAAAAAAA‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                                        <  2:6463775/120‑1 (MQ=255)
                                                                                       aaatCAAAAAA‑AAAAAAAAAAAAAAACCCTTTAAAATTAAAA‑AAAAAAAAAAAAA‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGatat                                       <  2:5825001/125‑1 (MQ=255)
                                                                                         ttaaaaaaa‑aaaaaaaaaaaaATACCC‑TAAAAA‑‑ATTA‑AAAAAAAAAAAAA‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                                  <  2:6128999/123‑1 (MQ=255)
                                                                                              aaaT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATT‑AAAAAAAAAAAAA‑AAAAAAAAAAAAACCCAACAATTATTTATAAAAAATACAAAATTTACCAAAATTTATTTTTTAAATAATAAATTGACAAAatat                            >  2:3757588/1‑128 (MQ=255)
                                                                                              aaaT‑AAAAAAAAAAAAAT‑CCAATTAAAA‑‑ATAA‑AAAAAAAAAAAAA‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataata                             <  2:3921741/128‑1 (MQ=255)
                                                                                                           aaCAATCCCC‑TTAAAA‑‑ATTA‑AAAAAAAAAAAAA‑AAAAAAAACAAAAAACAAACTATATTTATTAAAATAGCAATTTTAACCAAATTTTTTTTTTAAAATAATATATTGAAATAATTTATTTATAaaat                 >  2:5731556/1‑128 (MQ=255)
                                                                                                             aaaaatacccataaa‑‑aata‑aaaaaaAAAAAAA‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatata                <  1:91047/117‑1 (MQ=255)
                                                                                                             aaaaaaaccaataaa‑‑aatt‑aaaaaaAAAAAAA‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatata                <  1:5520747/117‑1 (MQ=255)
                                                                                                              aaaatcaccataaa‑‑aatt‑aaaaaaAAAAAAA‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatat               <  1:6970169/118‑1 (MQ=255)
                                                                                                                aattacattaaa‑‑aatt‑aaaaaAAAAAAAA‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatatat             <  2:5116858/121‑1 (MQ=255)
                                                                                                                aaaatcattaaa‑‑aatt‑aaaaaAAAAAAAA‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatatat             <  2:2454532/121‑1 (MQ=255)
                                                                                                                 aacaaattaaa‑‑aattaaaaaAAAAAAAAA‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatatat             <  1:5692697/122‑1 (MQ=255)
                                                                                                                  tcccattaaa‑‑aatt‑aaaaaAAAAAAAA‑AAAAAAAACTAAAAACAAACTCTATATCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATataa           <  1:5801133/123‑1 (MQ=255)
                                                                                                                  aaaaattAAA‑‑AAAT‑AAAAAAAAAAAAA‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATataa           <  1:803868/123‑1 (MQ=255)
                                                                                                                   tccccttaa‑‑aaat‑taaaaaAAAAAAA‑AAAAAAAAAAAAAAACAAACTCAATTTATTAAAATTCCCAATTATACCACATTTTATTTTTAAAATAAAATATTGAAAAAATATATATATAAAATAaataat          >  2:6197032/8‑128 (MQ=255)
                                                                                                                   aacattaaa‑‑aattaaaaaAAAAAAAAA‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATataa           <  2:314272/124‑1 (MQ=255)
                                                                                                                    cccttAAA‑‑AAAT‑AAAAAAAAAAAAA‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATataata         <  2:7173647/125‑1 (MQ=255)
                                                                                                                     atataaa‑‑aata‑aaaaaaAAAAAAA‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATAc        <  1:3520726/125‑1 (MQ=255)
                                                                                                                         aaa‑‑aatt‑aaaaaaAAAAAAA‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACtata    <  1:469579/128‑1 (MQ=255)
                                                                                                                         aaa‑‑aatt‑aaaaaaAAAAAAA‑AAAAAAAACTAAAAAAAAACTCTATTTCTTAAAATTAACTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACtata    <  2:4882036/128‑1 (MQ=255)
                                                                                                                          aa‑‑aaat‑taaaaaAAAAAAA‑AAAAAAAA‑AAAAAACAAACAATATTTATTAAAATTCCCTATTATAACAAAATTTATTTTTAAAATAAGATATTTAAATAATAtataaataatataaataaaaaaaaatt  >  2:4188368/1‑119 (MQ=255)
                                                                                                                          |                                                                                                                                    
AATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTTTTAAA‑‑AAAT‑AAAAAAAAAAAAA‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATATT  >  CP016816/202369‑202618

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.