Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816420,2530CA45.1% 1695.3 / inf 2188intergenic (‑536/+307)JCVSYN2_01895/JCVSYN2_0190030S ribosomal protein S10/tRNA‑Thr
Reads supporting (aligned to +/- strand):  ref base C (393/761);  new base A (801/145);  total (1204/984)
Fisher's exact test for biased strand distribution p-value = 0.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 2250 total aligned reads displayed.

AGAAAACTACTAGCACTTTTTTAAAAAATTTAAAATTAAAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTA‑TTAAT‑CAA‑TTTTATG‑C‑TCG‑‑TTTTTTTTTTTTTTTTT‑‑ACAAAAATATAA‑TTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATA‑ATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTT  >  CP016816/420126‑420378
                                                                                                                                        |                                                                                                                               
   aaaCTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTA‑TTAAT‑CAA‑TTTTATG‑C‑TCG‑‑TTTTTTTTTTTTTTTTT‑‑Aaaaa                                                                                                                              >  2:6727064/1‑128 (MQ=255)
   aaaCTACAAGCACTTTTTTAAAAAATTTTTAATTTTAAAAAATGAAATATTTTTAAAATTTTTAAATTTTTTTCAAAACATTATCTA‑TTAAT‑AAA‑TTTTATG‑C‑GCG‑‑TTTTTTTTTTTTTTTTT‑‑ACaaa                                                                                                                              <  2:2590436/128‑1 (MQ=255)
    aaataatataaattttttAAAATATTTTTAATTTTAAAAAATTAATTATTTTTAAAATTTTTAAAATTTTTTAAAATCATTATATA‑TTATT‑CAA‑TTTTATG‑C‑TCGT‑TTTTTTTTTTTTTTTTT‑‑ACaaa                                                                                                                              <  2:5066935/116‑1 (MQ=255)
      atatttttaCTTTTTTTTAAAATTTTTTATTTTAATAAATTAATTTTTTTTTAAATTGTTTAATTATTTTAAAATAATTATCAA‑TTAAT‑TAA‑TTTTATT‑CTTTT‑‑TTTTTTTTTTTTTTTTT‑‑ACaaaaa                                                                                                                            <  1:3030425/120‑1 (MQ=255)
        actaGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTA‑TTAAT‑CAA‑TTTTATG‑C‑TCG‑‑TTTTTTTTTTTTTTTTT‑‑AAAAAAatta                                                                                                                         >  1:5728492/1‑126 (MQ=255)
         ctaGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTA‑TTAAT‑CAA‑TTTTATG‑C‑TCGT‑TTTTTTTTTTTTTTTTT‑‑AAAAAAatat                                                                                                                         >  2:2505936/1‑128 (MQ=255)
          tatgaattttttTAAAAATTTTTTATTTTAATAAATGAATTATTTTTAATATTTTTAAATTATTTTAAAATAATTATATA‑TTAAT‑AAA‑TTTTTTT‑C‑TCG‑‑TTTTTTTTTTTTTTTTT‑‑ACAAAAATATaa                                                                                                                       <  2:4541534/122‑1 (MQ=255)
          taGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTA‑TTAAT‑CAA‑TTTTATG‑C‑TCG‑‑TTTTTTTTTTTTTTTTT‑‑AAAAAAAAATaa                                                                                                                       >  2:3618125/1‑128 (MQ=255)
          aactatttttttAAAAAAATTTTTATTTAAATATCTTTATTTATTTTCATATTTTTTAATTATTTTTTAATAATTATTAT‑TTAAT‑CAA‑TTTTTTG‑C‑GCG‑‑TTTTTTTTTTTTTTTTT‑‑ACAAAAATATaa                                                                                                                       <  1:450952/122‑1 (MQ=255)
           ataatttttttATAAAATTTTTTATTTTATAAAATTAATTATTTTTAAATTTTTTTAATTTTTTTTAATTTATTATTTT‑TTTAA‑TAA‑TTTTATT‑CTTTT‑‑TTTTTTTTTTTTTTTTT‑‑AAAAAAATATaa                                                                                                                       <  1:7027956/123‑1 (MQ=255)
            gCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTA‑TTAAT‑CAA‑TTTTATG‑C‑TCG‑‑TTTTTTTTTTTTTTTTT‑‑TAAAAAAAATaaat                                                                                                                     >  1:3763596/1‑126 (MQ=255)
            gCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTA‑TTAAT‑CAA‑TTTTATG‑C‑TCG‑‑TTTTTTTTTTTTTTTTT‑‑ACATAAATATAa‑tt                                                                                                                    >  2:6236398/1‑128 (MQ=255)
            gCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTA‑TTAAT‑CAA‑TTTTATG‑C‑TCG‑‑TTTTTTTTTTTTTTTTT‑‑AAAAAAATATAa‑tt                                                                                                                    >  1:6448700/1‑128 (MQ=255)
            aaatttttttAAAAATTTTTATATT‑TAATAAATTAATTATTTTTAAAATTTTTAAATTATTTTAAAATAATTTTAAA‑TTAAT‑AAA‑TTTTATT‑C‑TCG‑‑TTTTTTTTTTTTTTTTT‑‑ACAAAAATATAa‑ttt                                                                                                                   <  2:2367469/124‑1 (MQ=255)
              cattttttTAAAAATTTTTAATTTAAATAACTGAATTATTTTTCAAATTTTTAAATTATTTTCAAATTATTAACTT‑TTATA‑CAA‑TTTTATG‑C‑T‑G‑‑GTTTTTTTTTTTTTTTT‑‑ACAAAAATATAa‑tttat                                                                                                                 <  1:4094297/126‑1 (MQ=255)
              acatttttAATAAATTTTTAATTTTAATAACTTAATTATTTTTAAAATTTTTAAATTATTTTAAAATCATTATCTA‑TTAAT‑AAA‑TTTTATG‑C‑TCG‑‑‑TTTTTTTTTTTTTTTT‑‑ACAAAAATATAa‑tttat                                                                                                                 <  1:5637576/125‑1 (MQ=255)
              aCTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTA‑TTAAT‑CAA‑TTTTATG‑C‑TCG‑‑‑TTTTTTTTTTTTTTTT‑‑AAAAAAATATAa‑tttaa                                                                                                                 >  2:5377032/1‑127 (MQ=255)
               cTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTA‑TTAAT‑CAA‑TTTTATG‑C‑TCG‑‑TTTTTTTTTTTTTTTTT‑‑AAAAAAATAAAa‑tttat                                                                                                                 >  1:5945432/1‑128 (MQ=255)
                ttttttAAAAAATTTTTTATTTTAATAATTTAATTATTTTTAAAATTTTTAATTTATTTTATAATAATTATTTA‑TTTAT‑TAA‑TTTTTTT‑T‑TTT‑‑TTTTTTTTTTTTTTTTT‑‑ACAAAAATATAa‑tttatt                                                                                                                <  1:124672/128‑1 (MQ=255)
                ttttttAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTA‑TTAAT‑CAA‑TTTTATG‑C‑TCG‑‑TTTTTTTTTTTTTTTTT‑‑AAAAAAAAATAa‑tttttt                                                                                                                >  1:5400723/1‑128 (MQ=255)
                 tttttAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTA‑TTAAT‑CAA‑TTTTATG‑C‑TCGT‑TTTTTTTTTTTTTTTTT‑‑AAAAAAATATAa‑tttatt                                                                                                                >  2:5566563/1‑128 (MQ=255)
                  ttttAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTA‑TTAAT‑CAA‑TTTTATG‑C‑TCT‑‑TTTTTTTTTTTTTTTTTA‑AAAAAAATAAAa‑tttattt                                                                                                               >  2:5959106/1‑128 (MQ=255)
                   tttAAAAAATTTTTTATTTTTATAAATTTATTATTTTTAAAATTTTTAAATTTTTTTTAAATAATTATTTA‑TTAATATAT‑TTTTTTT‑T‑TTT‑‑TTTTTTTTTTTTTTTTT‑‑ACAAAAATATAA‑TTTATTTg                                                                                                              <  1:2820096/128‑1 (MQ=255)
                      aaaaaaTTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTA‑TTAAT‑CAA‑TTTTATG‑C‑TCG‑‑‑TTTTTTTTTTTTTTTT‑‑ACAAAAATATAA‑TTTATTTGATTaa                                                                                                         >  2:727747/1‑128 (MQ=255)
                       aaaaaTTTTTAATTTTAATAAATTAATTATTTTTTAAATTGTTTAATTTTTTTAAAATAATTATTTT‑TTAAT‑AAA‑TTTTATT‑C‑TCGT‑TTTTTTTTTTTTTTTTT‑‑ACAAAAATATAA‑TTTATTTGATTa                                                                                                          <  2:6403377/128‑1 (MQ=255)
                        aaaaTTTTTAATTTTAATAAATTTATTTTTTTTTAAATTTTTAAAATTTTTTAAAATAAATATATA‑TTAAT‑AAA‑TTTTTTG‑C‑TCT‑‑TTTTTTTTTTTTTTTTT‑‑ACAAAAATATAA‑TTTATTTGATTaaa                                                                                                        <  1:6227537/128‑1 (MQ=255)
                           atttttaattttaatTACTTAATTATTTTTCAAATTTTTAAATTATTTTAAAATCATTATATA‑TTAAT‑CAA‑TTTTATT‑C‑TCG‑‑TTTTTTTTTTTTTTTTT‑‑ACAAAAATATAA‑TTTATTTGATTAAACGt                                                                                                     <  2:6314511/116‑1 (MQ=255)
                            tttttaattttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTA‑TTAAT‑CAA‑TTTTATG‑C‑TCG‑‑TTTTTTTTTTTTTTTTT‑‑ACAAAAAAATAA‑TTTAATTTATTAAACTta                                                                                                    >  2:6049303/12‑128 (MQ=255)
                             ttttaattttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTA‑TTAAT‑CAA‑TTTTATG‑C‑TCG‑‑‑TTTTTTTTTTTTTTTA‑‑ACAAAAATTAAA‑TTTATTTGTTTAAAAAtata                                                                                                  >  1:3437625/11‑128 (MQ=255)
                              tttaattttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTA‑TTAAT‑CAA‑‑TTTATG‑C‑TCG‑‑TTTTTTTTTTTTTTTTT‑‑AAAAAAAAATAA‑TTTATTTTATTAAACGTatat                                                                                                 >  2:4809276/10‑128 (MQ=255)
                                ttatttttatAAATTAATTTTTTTTCAAATTTTTAATTTATTTTTAAATAATTATATT‑TTAAT‑AAA‑TATTTT‑‑‑‑TTT‑‑ATTTTTTTTTTTTTTTT‑‑ACAAAAATATAA‑TTTATTTGATTAAACGTATATTTa                                                                                              <  2:1702701/120‑1 (MQ=255)
                                taattttaatAAATTAATTTTTTTTTATATTTTTAAATTATTTTAAAATAATTATCTA‑TTAAT‑CAA‑TTTTATG‑G‑TCT‑‑TTTTTTTTTTTTTTTTT‑‑ACAAAAATATAA‑TTTATTTGATTAAACGTATAtt                                                                                                <  1:6049303/121‑1 (MQ=255)
                                   ttttaattatttaaTTATTTTTTTAATTTTTTAATTTTTTTTAAATTATTATTTA‑TTTAT‑TAATTTTTTTT‑T‑TTT‑‑TTTTTTTTTTTTTTTTT‑‑ACAAAAATATAA‑TTTATTTGATTAAACGTATATTTa                                                                                              <  2:4047403/116‑1 (MQ=255)
                                    tttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTA‑TTAAT‑CAA‑TTTTATT‑C‑TCG‑‑TTTTTTTTTTTTTTTTT‑‑ACAAAAATAAAA‑TTTATATGATAAAACTAAAATTTAtt                                                                                            >  2:4655562/4‑127 (MQ=255)
                                    tttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTA‑TTAAT‑CAA‑TTTTATG‑C‑TCG‑‑‑TTTTTTTTTTTTTTTT‑‑AAAAAAATATAA‑TTTATTTTATTAAACTTATAttttttt                                                                                           >  2:5712312/4‑124 (MQ=255)
                                      taatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTA‑TTAAT‑CAA‑TTTTATG‑C‑TCG‑‑TTTTTTTTTTTTTTTTT‑‑ACAAAAATATAA‑TTTATTTGATTAAACGATAATTTAtttt                                                                                          >  1:6383626/2‑128 (MQ=255)
                                       tattattGAATTTTTTTTTAAATTGTTTAATTTTTTTAAAATAATTATATT‑TTAAT‑AAA‑TTTTATT‑CTTTT‑‑TTTTTTTTTTTTTTTTT‑‑ACAAAAATATAA‑TTTATTTGATTAAACGTATATTTATGtt                                                                                          <  2:5641638/122‑1 (MQ=255)
                                        attattttattattTTTTAAATTTTTTTATTATTTTTAAATTATTTTATA‑TTAAT‑AAA‑TTTTTTT‑T‑TTT‑‑TTTTTTTTTTTTTTTTT‑‑AAAAAAATATAA‑TTTATTTTATTAAACATAAATATACGTTta                                                                                        <  2:4380635/120‑1 (MQ=255)
                                            cTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTA‑TTAAT‑CAA‑TTTTATG‑C‑TCG‑‑TTTTTTTTTTTTTTTTTTAAAAAAAATATAA‑TTTATTTTATTAAATTTATTTTATTTTTtaat                                                                                      >  2:6622720/1‑128 (MQ=255)
                                             ttaaTTTTTTTTTAAATTTTTAAATTATTTTAAAATATTTATATT‑TTAAT‑AAA‑TTTTTTT‑T‑TTT‑‑TTTTTTTTTTTTTTTTT‑‑ACAAAAATATAA‑TTTATTTGATTAAACGTATATTTATGTTTAATaaa                                                                                   <  1:5060059/126‑1 (MQ=255)
                                               tattattTTTTAAATTTTTAAAATTTTTTTAAAAAAATTTATATTTAAA‑AAA‑TTTTTTGTC‑GTT‑‑TTTTTTTTTTTTTTTTT‑‑ACAAAAATATAA‑TTTATTTGATTAAACGTATATTTATGTTTAATaaa                                                                                   <  1:5514796/127‑1 (MQ=255)
                                                  tattTTTCAAATTGTTAAATTATTTTCAAATCATTATCTA‑TTAAT‑CAA‑TTTTATG‑C‑TCGT‑TTTTTTTTTTTTTTTTT‑‑AAAAAAATATAA‑TTTTTTTGATTAAAGTTATTTTTTTTTTAAATAAAAATg                                                                               >  1:3883690/1‑128 (MQ=255)
                                                   attTTTCAAATTGTTAAATTATTTTCAAATCATTATCTA‑TTAAT‑CAA‑TTTTATG‑C‑TCG‑‑TTTTTTTTTTTTTTTTT‑‑ACAAAAATTTAA‑TTTTTTTGATTAAACGTATTTTTATTTTTAATAAAAATgta                                                                             >  1:7213992/1‑126 (MQ=255)
                                                     ttttAAAATTTTTAAATTTTTTTAAAATTATTTTATT‑TTAAT‑TAA‑TTTTTTT‑T‑TTT‑‑TTTTTTTTTTTTTTTTT‑‑ACAAAAATATAA‑TTTATTTGATTAAACGTATATTTATGTTTAAT‑AAAATGGaaaa                                                                          <  1:1001279/128‑1 (MQ=255)
                                                        tCAAATTGTTAAATTATTTTCAAATCATTATCTA‑TTAAT‑CAA‑TTTTATG‑C‑TCG‑‑TTTTTTTTTTTTTTTTT‑‑AAAAAAAATTAATTTTTTTTTTTTAAACTTTTTTTTTTTTTTATTAAAAATTTaaaat                                                                         >  2:7141095/1‑127 (MQ=255)
                                                          aaaTTTTTAAATTATTTTAAAATAATTTTTTT‑ATAAA‑TAA‑TTTTATT‑C‑TTG‑‑‑TTTTTTTTTTTTTTTT‑‑ACAAAAATATAA‑TTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAaaagaaag                                                                     <  1:6689933/128‑1 (MQ=255)
                                                          aaaTTGTTAAATTATTTTCAAATCATTATCTA‑TTAAT‑CAA‑TTTTATG‑C‑TCG‑‑‑TTTTTTTTTTTTTTTT‑‑ACAAAAATATAA‑TTTATTTAATTAAACGTATATTTATTTTTAATAAAAATGTaaaaaaaat                                                                     >  2:5477023/1‑127 (MQ=255)
                                                           aaTTGTTAAATTATTTTCAAATCATTATCTA‑TTAAT‑CAA‑TTTTATG‑C‑TCGT‑TTTTTTTTTTTTTTTTT‑‑AAAAAAATATAA‑TTTATTTTATTAAACTTATATTTATTTTTAATAAAAATTTAaaataaa                                                                      >  2:4241221/1‑128 (MQ=255)
                                                           aaTTGTTAAATTATTTTCAAATCATTATCTA‑TTAAT‑CAA‑TTTTATG‑C‑TCG‑‑‑TTTTTTTTTTTTTTTT‑‑ACAAAAATATAT‑TTTATTTTTTTAAACGTATATTTATGTTTAATAAAAATGTAAAAGAAAGt                                                                    >  2:3758621/1‑128 (MQ=255)
                                                           aaTTGTTAAATTATTTTCAAATCATTATCTA‑TTAAT‑CAA‑TTTTATG‑C‑TCG‑‑‑TTTTTTTTTTTTTTTT‑‑ACAAAAATATAA‑TTTATTTGATTAAACGTATATTTATTTTTAATAAAAATTTAaaagaaatt                                                                    >  2:1940953/1‑126 (MQ=255)
                                                           aaTTGTTAAATTATTTTCAAATCATTATCTA‑TTAAT‑CAA‑TTTTATG‑C‑TCG‑‑‑TTTTTTTTTTTTTTTT‑‑AAAAAAATATAA‑TTTTTTTTATTAAAAGTATTTTTATTTTTAATAAAAATggtatattaatg                                                                    >  1:2198089/1‑118 (MQ=255)
                                                           aaTTGTTAAATTATTTTCAAATCATTATCTA‑TTAAT‑CAA‑TTTTATG‑C‑TCG‑‑‑TTTTTTTTTTTTTTTT‑‑AAAAAAATATAA‑TTTATTTTATTAAACTTATATTTATTTTTAATAAAAATataaaataaatt                                                                    >  2:3357016/1‑126 (MQ=255)
                                                             ttGTTAAATTATTTTCAAATCATTATCTA‑TTAAT‑CAA‑TTTTATG‑C‑TCG‑‑TTTTTTTTTTTTTTTTT‑‑AAAAAAATATAA‑TTTATTTGATTAAACTTATTTTTATTTTTAATAAAAATTTAaaataaattt                                                                   >  2:2884733/1‑125 (MQ=255)
                                                              tGTTAAATTATTTTCAAATCATTATCTA‑TTAAT‑CAA‑TTTTATG‑C‑TCG‑‑TTTTTTTTTTTTTTTTTA‑AAAAAAATAAAA‑ATTATTTTATTAAACTTATATTTATTTTTAAAAAAAATataaaataaatta                                                                   >  2:5207683/1‑125 (MQ=255)
                                                                 tAAAATATTTTTAAATTATTATTTA‑TTAAT‑TTA‑TTTTATG‑C‑TCT‑‑TTTTTTTTTTTTTTTTT‑‑ACAAAAATATAA‑TTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAAtt                                                               <  1:1414258/128‑1 (MQ=255)
                                                                     ttattTTCAAATCATTATCTA‑TTAAT‑CAA‑TTTTATG‑C‑TCG‑‑TTTTTTTTTTTTTTTTT‑‑ACAAAAATATAA‑TTTATTTTATTAAAAGTATATTTATGTTTAATAAAAATGAAAAATaaattaaattttaa                                                           >  1:2678460/1‑124 (MQ=255)
                                                                       attTTAAAATAATTTTTTT‑TTAAT‑TAA‑TTTTATG‑A‑TAG‑‑‑‑TTTTTTTTTTTTTTT‑‑ACAAAAATATAA‑TTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCata‑at                                                      <  1:6129909/128‑1 (MQ=255)
                                                                         tttCAAATCATTATCTA‑TTAAT‑CAA‑TTTTATG‑C‑TCGTTTTTTTTTTTTTTTTTTT‑‑AAAAAAAAATAA‑TTAATTTTATTAAAAGTAAATTTATTTTTAAAAAAAATTTAAAATAAATTTAATTGtaaaa                                                         >  1:1850851/1‑124 (MQ=255)
                                                                            cAAATCATTATCTA‑TTAAT‑CAA‑TTTTATG‑C‑TCG‑‑‑‑TTTTTTTTTTTTTTT‑‑AAAAAAATATAA‑TTTTTTTTATAAAAAGTATAATTTTTTTTAATAAAAATTCTAAAGAAAATTAATTTTAATA‑Aaaattt                                                 >  2:381037/1‑128 (MQ=255)
                                                                               aTCATTATCTA‑TTAAT‑CAA‑TTTTATG‑C‑TCG‑‑TTTTTTTTTTTTTTTTT‑‑AAAAAAATTTAA‑TTTATTTTATTAAACTTATATTTATTTTTATTAAAAATTTAAAATAAATTTAATTTTCATA‑Ataattta                                                >  2:4949451/1‑128 (MQ=255)
                                                                                tCATTATCTA‑TTAAT‑CAA‑TTTTATG‑C‑TCG‑‑‑‑TTTTTTTTTTTTTTT‑‑ACAAAAATATAA‑TTTATTTTATTAAACGTATATTTATTTTTAATAAAAATGGAAAAGAAATTGAATTTTAATA‑Ataatataatt                                             >  2:4150765/1‑128 (MQ=255)
                                                                                    tATCTA‑TTAAT‑CAA‑TTTTATG‑C‑TCGT‑TTTTTTTTTTTTTTTTT‑‑AAAAAAAAATAA‑TTTATTTTTTTAAAATTATTTTTATTTTTAATAAAAATTAAAAAAAAATTTAATTTTAATA‑Aaaatttaataa                                            >  2:1008464/1‑126 (MQ=255)
                                                                                      attA‑TTTAT‑AAA‑TTTTATT‑C‑TC‑‑‑‑TTTTTTTTTTTTTTTT‑‑ACAAAAATATAA‑TTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATA‑ATAATTTAATTAAatat                                       <  1:869119/126‑1 (MQ=255)
                                                                                         a‑ttatt‑CAT‑ATTTATG‑C‑GCG‑‑‑TTTTTTTTTTTTTTTT‑‑ACAAAAATATAA‑TTTATTTGATTAAACGTATATTTATGTTTAATAAAAATTGAAAAGAAAGTGAATTGTCATA‑ATAATTTAATTAAatatat                                     <  1:3656320/128‑1 (MQ=255)
                                                                                         a‑TTAAT‑CAA‑TTTTATG‑C‑TCG‑‑‑TTTTTTTTTTTTTTTT‑‑ACAAAAATAAAA‑TTTATTTTATTAAACTTATTTTTATGTTTAATAAAAATTTAAAAGAAAGTTAATTTTCATA‑AAAATTTTATTAAatataa                                     >  2:3179388/1‑127 (MQ=255)
                                                                                            tAAT‑CAA‑TTTTATG‑C‑TCG‑‑‑TTTTTTTTTTTTTTTT‑‑AAAAAAATATAA‑TTTATTTGATTAAAATTATATTTATTTTTAATAAAAATGAAAAATAAATTAAATTTTAAAA‑AAAATTTAATAAAATATATaa                                   >  1:2527082/1‑128 (MQ=255)
                                                                                             aaT‑CAA‑TTTTATG‑C‑TCGTTTTTTTTTTTTTTTTTTT‑‑AAAAAAAAAAAA‑TTTATTTTAATAAAAATTAATTTTTTTTTAATAAAAATGTAAAAAAAATATAATATTAATA‑ATAATTTAATAAAataaaa                                     >  2:1552455/1‑125 (MQ=255)
                                                                                             aaT‑CAA‑TTTTATG‑C‑TCG‑‑TTTTTTTTTTTTTTTTT‑‑ACAAAAATATAA‑TTTATTTTATTAAAAGTATATTTATTTTTAATAAAATTGTAAAAGAAAGTTAATTGTAATT‑ATAATTTAATTAAATATATaa                                   >  2:6508727/1‑128 (MQ=255)
                                                                                              aT‑CAA‑TTTTATG‑C‑TCGT‑TTTTTTTTTTTTTTTTT‑‑AAAAAAATAAAA‑TTTTTTTATTTAAAATTA‑ATTTTTTTTTAAAAAAAATTGAAAAAAAAATTAATTTTTAAA‑AAAAATTAATTTAataaataaa                                  >  1:6303028/1‑127 (MQ=255)
                                                                                              aT‑CAA‑TTTTATG‑C‑TCG‑‑‑TTTTTTTTTTTTTTTA‑‑AAAAAAATATAA‑TTTATTTGATTAAACGTATATTTATTTTTAATAAAAATTTAAAATAAAGTAAATTGTAATA‑ATAATTTAATTAAATATaaaaaa                                 >  2:1828939/1‑126 (MQ=255)
                                                                                                   a‑TTTTATG‑C‑TCGT‑TTTTTTTTTTTTTTTTT‑‑AAAAAAATATAA‑TTTTTTTTATTAAACTTATATTTATTTTTAATAAAAATGTAAAATAAATTGAATTGTAAAA‑AAAATTTAATTAATAATAAAAAAAt                               >  2:2247433/1‑128 (MQ=255)
                                                                                                   a‑TTTTATG‑C‑TCG‑‑‑TTTTTTTTTTTTTTTT‑‑AAAAAAATATTT‑TTAATTTTATTAAAAGTTTATTTATTTTTAATAAAAATGGAAAAAAAATTAATTTTTAATA‑ATAATTTATTTAAAATTATAACAAttt                             >  1:2368331/1‑126 (MQ=255)
                                                                                                     aattttaatgtag‑‑TTTTTTTTTTTTTTTTT‑‑ACTAAAATATAA‑TTTAATTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATA‑ATAATTTAATTAAATATATAACAAt                               <  1:6557524/116‑1 (MQ=255)
                                                                                                         tttttttttttttttttttttttttttt‑‑ACAAAAATATAA‑TTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATA‑ATAATTTAATTAAATATATAACAATGt                             <  1:2012416/117‑1 (MQ=255)
                                                                                                         tatttttttttttttttttttttttttt‑‑ACAAAAATATAA‑TTTATTTGATTAAAAGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATA‑ATAATTTAATTAAATATATAACAATGt                             <  2:2735517/117‑1 (MQ=255)
                                                                                                          tttgtttg‑‑TTTTTTTTTTTTTTTTT‑‑ACAAAAATATAA‑TTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATA‑ATAATTTAATTAAATATATAACAATGTAAg                          <  1:1723717/121‑1 (MQ=255)
                                                                                                          tG‑C‑TCG‑‑TTTTTTTTTTTTTTTTT‑‑AAAAAAATATAA‑TTTATTTTATTAAACGTATATTTATTTTTAATAAAAATGTAAAAAAAATTGAATTTTAATA‑ATAATTTAATTAAATTTATAAAaatttaattt                        >  1:693549/1‑128 (MQ=255)
                                                                                                          tG‑C‑TCG‑‑TTTTTTTTTTTTTTTTT‑‑AAAAAAAATTAT‑TTAATTTTAATAAACATAAATTTATGTTTAATAAAAATTAAAAATAAAGTAAATTTAAAAA‑AAAATTAAATTAAAAATAAAAAaatttaattt                        >  2:798631/1‑128 (MQ=255)
                                                                                                           g‑C‑TCGT‑TTTTTTTTTTTTTTTTT‑‑ACAAAAATATAA‑TTTATTTGATTAAACGTATTTTTATGTTTAATAAAAATTGAAAATAAATTTATTTTTCATA‑ATAATTTAATTAAATATATAACAATTTatttt                        >  2:1264998/1‑124 (MQ=255)
                                                                                                           g‑C‑TCG‑‑TTTTTTTTTTTTTTTTA‑‑AAAAAATTATAA‑TTTATTTTATAAAAATTTTTTTTTTTTTTAATAAAAATGTAAAAAAAAGTTATTTTTAATA‑ATTATTTAATTAAATATAaaaaaacttaataga                       >  1:4657406/1‑119 (MQ=255)
                                                                                                                ttttttttttttttttttttt‑‑ACAAAAATATAA‑TTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATA‑ATAATTTAATTAAATATATAACAATGTAAGtttt                      <  2:6170831/124‑1 (MQ=255)
                                                                                                                cG‑‑TTTTTTTTTTTTTTTTT‑‑AAAAAAATATAA‑TTTATTTTATTAAACGTATTTTTTTTTTTAATAAAAATTTAAAATAAATTTAATTTTAAAA‑ATAATTTAATTAAATATATAACAATTTAATTTTTaa                    >  2:6987040/1‑128 (MQ=255)
                                                                                                                cG‑‑TTTTTTTTTTTTTTTTT‑‑AAAAAAATATAA‑TTTATTTTATTAAACGTATATTTATTTTTAATAAAAATTTAAAAGAAATTTAATTTAAATA‑ATAATTTAATTAAATAAATAAAAAATTAATTTTTaa                    >  2:2077674/1‑128 (MQ=255)
                                                                                                                cG‑‑TTTTTTTTTTTTTTTTT‑‑AAAAAAATATAA‑TTTATTTTATTAAACGTATATTTATGTTTAATAAAAATGGAAAATAAAGTTAATTGAAATA‑ATAATTTAATTAAATATATAACAATTTAATTTTTaa                    >  2:890230/1‑128 (MQ=255)
                                                                                                                 tttttttttttttttttttt‑‑ACAAAAATATAA‑TTTATTTGATTAATAGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATA‑ATAATTTAATTAAATATATAACAATGTAAGTTTTa                     <  1:1552021/125‑1 (MQ=255)
                                                                                                                 g‑‑TTTTTTTTTTTTTTTTT‑‑TCAAAAATATAA‑TTTATTTGATTTAACGTATATTTTTGTTTAAATAAAATGGAAAAGAAAGTGGATGGGCATA‑TTATTTTAATTAAATATATAACAATGTATGTTTTaaa                   >  2:1405456/1‑128 (MQ=255)
                                                                                                                 g‑‑TTTTTTTTTTTTTTTTT‑‑ACAAAAATATAA‑TTTATTTGATTAAACTTATATTTATGTTTAATAAAAATGTAAAATAAAGTTAATTGTAATA‑ATAATTTAATTAAATATATAAAAATTTAAGTTTTaaa                   >  2:3928888/1‑128 (MQ=255)
                                                                                                                    ttttttttttttttttt‑‑ACAAAAATATAA‑TTTATTTGATTAAACGTATTTTTATTTTTAATAAAAATGTAAAAGAAATTTAATTTTAATA‑ATAATTTAATTAAATATATAACAATTTAATTTTTaaaa                  >  2:1130887/1‑128 (MQ=255)
                                                                                                                     tttttttttttttttt‑‑ACAAAAATATAA‑TTTATTTGATTAAAAGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATA‑ATAATTTAATTAAATATATAACAATGTAAGTTTTAAAac                 <  1:6793285/128‑1 (MQ=255)
                                                                                                                     tttttttttttttttt‑‑AAAAAAATATAT‑TTTTTTTTATAAAAGTTATTTTTTTTTTTTA‑AAAATTTGAAAAAAAATTTTATTTTAATATATTTTTAATTTAAATATATAA‑AATTTAATTTTTaaaata                >  1:793109/1‑126 (MQ=255)
                                                                                                                     tttttttttttttttt‑‑AAAAAAATATAA‑TTTTTTTGATTAAACGTATATTTATGTTTAAAAAAAATGGAAAAAAAATTTAATTTTAATA‑ATAATTTATTTAAAAAAATAAAAATTTAATTTTTaaaaa                 >  2:326978/1‑127 (MQ=255)
                                                                                                                      ttttttttttttttt‑‑ATAAAAATATAA‑TTTATTTGATTAAATGTATATTTATGTTTAATAAATATGGAAAAGAAAGTGAATTGTCATA‑ATAATTTAATTAAATATATAACAATGTAAGTTTTAAAact                <  1:4309130/128‑1 (MQ=255)
                                                                                                                       tttttttttttttt‑‑AAAAAAATATAA‑TTTTTTTTATTAAACGTATATTTATTTTTAATAAAAATGTAAAATAAAGTGAATTTTAATA‑ATAATTTAATTAAATATATAAAAATTTAAGTTTAAAAaatt               >  1:7118035/1‑128 (MQ=255)
                                                                                                                        ttttttttttttt‑‑AAAAAAATATAA‑TTTATTTGATTAATAGTATATTTATGTTTAATATTAATGGAAAAGAAAGTGAATTGTAATA‑ATAATTTAATTAAATATATAACAATGTAAGTTTTAAAactta              <  1:4849561/128‑1 (MQ=255)
                                                                                                                         tttttttttttt‑‑ACAAAAATATAA‑TTTATTTGATTAAAATTTTATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATA‑ATAATTTAATTAAATATATAACAATGTAAGTTTTAAAacttac             <  2:6839522/128‑1 (MQ=255)
                                                                                                                              ttttttt‑‑ATAAATATATAA‑TTTATTTGATTAAACGTATATTTATGTTTAATAAATATGGAAAAGAAAGTGAATTGTCATA‑ATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACttttt        <  1:3244758/128‑1 (MQ=255)
                                                                                                                              ttttttt‑‑ACAAAAATATAA‑TTTATTTGATTAAACGTTTTTTTATTTTTAATAAAAATGTAAAAGAAAGTTAATTTTAATA‑ATAATTTATTTTAATTTATAAAAATTTAATTTTTAAAAATTAAttttt        >  2:5853945/1‑128 (MQ=255)
                                                                                                                               tttttt‑‑ACAAAAATATAA‑TTTTTTTGATTAAACGTTTATTTATGTTTAATAAAAATGGAAAATAAAGTTATTTGTCATA‑ATAATTTAATTAAATATTTAAAAATTTAAGTTTTAAAAATTACtttttt       >  2:3477121/1‑128 (MQ=255)
                                                                                                                                 tttt‑‑AAAAAAATTTAA‑TTTTTTTGTTTAAACGTTATTTTTTGTTTATTAAAAATGGAAAATAATTTTAATTTTCATA‑TTAATTTTATTTAATATTTAACAAAGTAAGTTTTAAAACTTAATTTTTTGt     >  2:3044721/1‑128 (MQ=255)
                                                                                                                                  ttt‑‑AAAAAAATATAA‑TTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATA‑ATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGtt    <  1:5859585/128‑1 (MQ=255)
                                                                                                                                        |                                                                                                                               
AGAAAACTACTAGCACTTTTTTAAAAAATTTAAAATTAAAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTA‑TTAAT‑CAA‑TTTTATG‑C‑TCG‑‑TTTTTTTTTTTTTTTTT‑‑ACAAAAATATAA‑TTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATA‑ATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTT  >  CP016816/420126‑420378

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑