Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP01681676,8780GT34.0% 4930.4 / inf 2708intergenic (‑127/+58)JCVSYN2_00300/JCVSYN2_00305UTP‑‑glucose‑1‑phosphate uridylyltransferase/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base G (1437/274);  new base T (24/859);  total (1465/1243)
Fisher's exact test for biased strand distribution p-value = 0.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 2756 total aligned reads displayed.

TAATATCTCCTTAAAAATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATAT‑T‑AC‑AA‑‑‑‑C‑TTT‑TTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTAAAT  >  CP016816/76751‑77009
                                                                                                                               |                                                                                                                                            
taataTCTCCTTAAAAATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATTACTGTACAACCCAAATTACCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAg                                                                                                                                              >  1:3878163/1‑128 (MQ=255)
   tatCTCCTTAAAAATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACACAAATTCCCCTTTAAATTCAAATAACAATATATAAAGATAAATTATTTAAAGaaa                                                                                                                                           >  2:4644761/1‑128 (MQ=255)
     tctcCTTAAAAATTTATATATATTAGTGAACTTAAGGATGTATAAAACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTAAAAGaaaaa                                                                                                                                         >  2:1794117/1‑128 (MQ=255)
         cTTAAAAATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACACAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATAt‑t                                                                                                                                    >  2:1649648/1‑128 (MQ=255)
          ttAAAAATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATAT‑T‑a                                                                                                                                  >  2:5014384/1‑128 (MQ=255)
           tAAAAATTTATATATATTAGTGAACTTAATGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTAAAATAACATTATATAAATATAAATTTTTTAAAGAAAAATAT‑T‑Ac                                                                                                                                 <  1:144098/128‑1 (MQ=255)
                aTTTATATATATATTTGAACTTAAGGATGTATAATAAAAATTAAAAATAACTGTACAACCCAAATTCCCCTTTAAATTAAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATAT‑T‑AC‑AA‑‑‑‑C‑tt                                                                                                                      <  1:6179635/128‑1 (MQ=255)
                 tttATATTTTTTATTGAATTTTATGATGTTTAATAAAAATTAATAATAACTTTAAAACACAAATTACCCTTTAAATTTAAATAAAATTATATAAAGATAAATTTTTTAAAGAAAAATAT‑T‑AC‑AA‑‑‑‑C‑ttt                                                                                                                     <  1:5656248/128‑1 (MQ=255)
                 tttATATATATTAGTGAACTTAAGGATGTTTAAAACAAATTAAAAATAACTTTACAACCCAAATTTCCCTTTAAATTCAAATAACATTTTATAAAGAAAAATTTTTTAAACAAAAATAT‑T‑AA‑AA‑‑‑‑C‑ttt                                                                                                                     <  2:4848185/128‑1 (MQ=255)
                   tatatataTTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATAT‑T‑AC‑AA‑‑‑‑G‑ttt‑tt                                                                                                                  >  1:5428812/1‑128 (MQ=255)
                    atatatatTACTCAAATTAAGTATCTATAAAACAAATTAAAAATAACTGTACAACCCAAATTCCCCATTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATAT‑T‑AC‑AA‑‑‑‑C‑ttt‑ttt                                                                                                                 <  2:4353243/128‑1 (MQ=255)
                     aatatatTACTGAACTTAATGATTTATAATAAAAAAAAATAATAACTGTACAACCCAAATTCCCCTTTAAATTAAAATAACATTATATAAAGTTAAAATTTTTAAATAAAAATAA‑T‑TC‑AA‑‑‑‑C‑att‑tttt                                                                                                                <  2:5495287/127‑1 (MQ=255)
                       tatatTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATAT‑T‑AC‑AA‑‑‑‑C‑ttt‑tttttt                                                                                                              >  1:1000171/1‑128 (MQ=255)
                       tatatTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATAT‑A‑AC‑AA‑‑‑‑C‑ttt‑tttttt                                                                                                              >  1:6549984/1‑128 (MQ=255)
                        atatTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATAT‑T‑AC‑AA‑‑‑‑C‑ttt‑ttttttt                                                                                                             >  2:3595506/1‑128 (MQ=255)
                         tatttttGAACTTAATGATGTATAAAAAAAATTAAAAATAACTTTAAAACCCAAATTCCCCTTTAAATTAAAATAAAATTATATAAATATAAATTTTTTAAATAAAAATAT‑T‑AC‑AA‑‑‑‑A‑ttt‑tttttttt                                                                                                            <  1:504401/122‑1 (MQ=255)
                         tatTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATAT‑T‑AC‑AA‑‑‑‑C‑ttt‑tttttttt                                                                                                            >  2:3452709/1‑128 (MQ=255)
                          atTAGTGCACATAAGGATTTAAAAAAAAAATTAAAAAAAACTTTACAACCCAAATTCCCCTTTAAAATAAAAAAAAAATATATAAACATAAATTTTTTAAACAAAAAAAT‑T‑AC‑AA‑‑‑‑C‑ttt‑ttttttttt                                                                                                           <  2:6275409/128‑1 (MQ=255)
                          atTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATACCCCTTTAAATTCAAATAACATTATAGAAAGATAAATTTTTTAAAGAAAAATAA‑T‑AC‑AA‑‑‑‑C‑ttt‑tttttattt                                                                                                           >  2:6382240/1‑128 (MQ=255)
                           ttAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATAT‑T‑AC‑AA‑‑‑‑C‑ttt‑tttttttttt                                                                                                          >  2:6710931/1‑128 (MQ=255)
                                gAACTTAATGATGTATAATAAAAATTAAAAATAACTGTACAACCCAAATTCCCCTTTAAATTAAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATAT‑T‑AC‑AA‑‑‑‑C‑ttt‑tttttttttggaact                                                                                                     <  2:2980213/128‑7 (MQ=255)
                                  aCTTAACGTTTTAAAATAAAAATTAAAAAAAAATTTAAAAACCAAATTACCCTTTAAATTCAAAAAACATTTAATAAATATAAATTTTTTAAATAAAAATAT‑T‑AC‑AA‑‑‑‑C‑‑TT‑TTTTTTTTTTTTTGGAAc                                                                                                  <  2:2515004/128‑1 (MQ=255)
                                   attattgATGTAAAATAAAAATTAATAAAAACTTTACAAACCAAATTACCCTTTAAATTAAAAAAAAAATAAATAAATATAAATTTTTTAAATAAAAATAT‑T‑TA‑AA‑‑‑‑A‑TTT‑TTTTTTTTTTTTTGGAAc                                                                                                  <  1:2311903/122‑1 (MQ=255)
                                    ttAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATAT‑T‑AC‑AA‑‑‑‑C‑ttt‑tttttttttttttttttta                                                                                                 >  1:2125051/1‑122 (MQ=255)
                                     tAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATAT‑T‑AC‑AA‑‑‑‑C‑tta‑tttttttttttttataaata                                                                                                >  2:85902/1‑121 (MQ=255)
                                     tAAAGATTTAAAAAAAAAAATAATAAAAAATTTAAAACACAAATTCCCCTTTAAAATTAAAAAAAAATATAAAAATATAAATTTTTTAAATAAAAAAAT‑T‑TA‑AA‑‑‑‑A‑TTT‑TTTTTTTTTTTTTGGAACTa                                                                                                <  1:3120537/128‑1 (MQ=255)
                                       aGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATAT‑T‑AC‑AA‑‑‑‑C‑ttt‑ttttttttttttgtaaaaaaaa                                                                                              >  1:4239056/1‑118 (MQ=255)
                                       aGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATAT‑T‑AC‑AA‑‑‑‑C‑TTT‑TTTTATTTTTTTTGTAAATAAc                                                                                              >  2:4469806/1‑128 (MQ=255)
                                        ggATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATAT‑T‑AC‑AA‑‑‑‑C‑TTT‑TTTTTTTTTTTTTgtagaaaaat                                                                                             >  1:7001082/1‑119 (MQ=255)
                                          tagTAAAATAAAAATTAATAATAAATGAACAACCCAAATTCCCCTTTAAAATGAAATAAAATTTTAAAAATATAAAATTTTTAAACAAAAATAT‑T‑AC‑AA‑‑‑‑C‑TTT‑TTTTTTTTTTTTTGGAACTAACata                                                                                           <  2:1446499/126‑1 (MQ=255)
                                           tttataAAACAAATTAAAAATAACTTTAAAACCCAAATTCCCCTTTAAATTAAAAAAAAATTATATAAACATAAATTTTTTAAATAAAAATAT‑T‑AA‑AA‑‑‑‑CTTTT‑TTTTTTTTTTTTTGGAACTAACata                                                                                           <  1:5883159/126‑1 (MQ=255)
                                           tGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATAT‑T‑AC‑AA‑‑‑‑C‑‑‑T‑TTTTTTTTTTTTTGGAAATAACATaaaa                                                                                        >  2:2710443/1‑128 (MQ=255)
                                           ataaaaaaaaaaaTTAAAAAAAACTTTACAAACAAAAATCCCCTTTAAAATAAAATAAAATTATATAAATAAAAATTTTTTAAAAAAAAAAAT‑T‑AA‑AAAT‑‑T‑TTT‑TTTTTTTTTTTTTGGAACTAACat                                                                                            <  2:1327917/118‑1 (MQ=255)
                                            ttataATACAAATTAATAATAACTGTACAAACCAAATTCCCCTTTAAATTCAAAAAAAATTATAAAAATATAAATTTTTTAAACAAAAATAA‑T‑AC‑AA‑‑‑‑C‑TTT‑TTTTTTTTTTTTTGGAACTAACAtata                                                                                         <  2:6011918/127‑1 (MQ=255)
                                             ttaaaaaaaaaTTAAATAAAAATTTATAAACCAATATCCCATTTAAAATTAAATAAAATTATTTAAATTTAAATTTTTTAAATAAAAATTT‑T‑AA‑AA‑‑‑‑A‑TTT‑TTTTTTTTTTTTTGGAACTAACATATaa                                                                                        <  1:4901031/120‑1 (MQ=255)
                                             tataATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATAT‑T‑AC‑AA‑‑‑‑C‑TTT‑TTTTTTTTTTTTTGGaaaaaaaatttaa                                                                                        >  1:7136865/1‑117 (MQ=255)
                                             tataATACAAATTAATAATAACTGTACAACCCAAATTCACCTTTAAAATCAAATAACATTATATAAAGATAAATATTAAAAAGAAAAATAT‑T‑AC‑AA‑‑‑‑A‑TTT‑TTTTTTTTATTTTTaaaataaaaaataa                                                                                        >  2:2844158/1‑128 (MQ=255)
                                               taataCAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATAT‑T‑AC‑AA‑‑‑‑C‑TTT‑TTTTTTTTTTTTTTTAAAAAAAATATAAtt                                                                                      >  1:2973377/1‑128 (MQ=255)
                                               taataCAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATAT‑T‑AC‑AA‑‑‑‑C‑‑TT‑TTTTTTTTTTTTTGTAAAAAACATATAAttt                                                                                     >  1:1951440/1‑128 (MQ=255)
                                                 ataaataTTAATAAATAATGTTCAAACCAAATTACCATTTTAATTTAAATAAAATTATATAAATTTAAATTTTTTAAATAAAAATAT‑T‑AA‑AA‑‑‑‑C‑‑TT‑TTTTTTTTTTTTTGGAACTAACATATAATTTTa                                                                                   <  1:179540/122‑1 (MQ=255)
                                                    cAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATAT‑T‑AC‑AA‑‑‑‑C‑TTTATTTTTTTTTTTTTTTAAATAAAAAATAAtttaaa                                                                                  >  2:5600878/1‑125 (MQ=255)
                                                    cAAATTAATAAAAAAGGTACAACCCAAATTCCCCTTATAATTTAAATAACATTTTATAAACATAAATTTTTTAAATAAAAATAT‑T‑AC‑AA‑‑‑‑C‑TTT‑TTTTTTTTTTTTTGGAACTAACATATAATTTTAcc                                                                                 <  1:3247943/128‑1 (MQ=255)
                                                    aaaaTTAATAATTACTGTACAACCCAAATTCACCTTTAAATTCAAAAAAATATATATAAACATAAATTTTTTAAAGAAAAAAAT‑T‑AA‑AA‑‑‑‑A‑TTT‑TTTTTTTTTTTTTGGAACTAACATATAATTTTAcc                                                                                 <  1:2577438/127‑1 (MQ=255)
                                                      aaataaaaataaCATTAAAACCCAAAATACCCCTTAAAATTAAAAAAAATTATAAAAATATTAAATTTTTAAAAAAAAAAAA‑T‑AA‑AA‑‑‑‑A‑TTT‑TTTTTTTTTTTTTGGAACTAACATATAATTTTACCaa                                                                               <  2:6623893/125‑1 (MQ=255)
                                                      aaTTAAAAAATAATGTACAAACAAAATTACCATTTAAAATAATATAAAATTTTATAAATTTAAATTTTTTAAATAAAAATAT‑T‑TA‑AA‑‑‑‑A‑TTT‑TTTTTTTTTTTTTGGAACTAACATATAATTTTACCaa                                                                               <  2:1159600/128‑1 (MQ=255)
                                                       aataataataaATTTAAAAACAAAATTTCCATTTAAATTAAAATTACATTATATAAATATAAAATTTTTAAAAAAAAATAT‑TAAA‑AA‑‑‑‑T‑TTT‑TTTTTTTTTTTTTGGAACTAACATATAATTTTACCaa                                                                               <  2:5360725/126‑1 (MQ=255)
                                                       aTTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATAT‑T‑AC‑AA‑‑‑‑C‑TTT‑TTTTTTTTTTTTTTAAAAAAAAATATAATTTTACAAat                                                                              >  2:4077534/1‑128 (MQ=255)
                                                          aataataaCTGTAAAAACCAAATTCCCCTTTAAATTCAAATAAAATTATATAAATATAAATTTTTTAAATAAAAATAA‑T‑AA‑AA‑‑‑‑C‑TTT‑TTTTTTTTTTTTTGGAACTAACATATAATTTTACCAattat                                                                           <  2:7238156/128‑1 (MQ=255)
                                                             aataaATGTAAAAAATAAATTACTCTTTAAATTTAAATAAAATTATTAAAATTTAAATTTTTTAAATAAAAATAT‑T‑AA‑AAT‑‑‑T‑TTT‑TTTTTTTTTTTTTGGAACTAACATATAATTTTACCAAttatta                                                                         <  1:155073/128‑1 (MQ=255)
                                                               taaCTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATAT‑T‑AC‑AA‑‑‑‑C‑TTT‑TTTTTTTTTTTTTGTAACTAAAATATAATTTTACAAATTATTaaaa                                                                      >  1:1655226/1‑128 (MQ=255)
                                                               taaCTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATAT‑T‑AC‑AA‑‑‑‑C‑TTT‑TTTTTTTTTTTTTGTAACTAAAATATAATTTTAACAATTATTAGaa                                                                      >  1:4360687/1‑128 (MQ=255)
                                                                aaatGTAAAACCAAAATTCCCCTTTAAAATAAAATAAAATAATATAAAAAAAAATTTTTTAAAGAAAAATAT‑T‑AC‑AA‑‑‑‑C‑‑TT‑TTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGaatt                                                                    <  1:6788617/125‑1 (MQ=255)
                                                                 aCTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATAT‑T‑AC‑AA‑‑‑‑CTTTT‑TTTTTTTTTTTTTTTAAATAACATAAAATTTTAAAAATTATTATaat                                                                     >  2:5233688/1‑128 (MQ=255)
                                                                     tccAACCCAAATTCCCCTTTAAATTCAAAAAACATTATATAAATTTAAATTTTTTAAAGAAAAATAT‑T‑AC‑AA‑‑‑‑C‑‑TT‑TTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGaatttcaat                                                               <  1:474709/126‑1 (MQ=255)
                                                                       aaaaaaaaaTTACCATTTAAATTTAAATAAAATTTTTAAAATTTAAATTTTTTATAAAAAAATTT‑T‑AA‑AA‑‑‑‑A‑TTT‑TTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGaatttcaatt                                                              <  1:2414587/122‑1 (MQ=255)
                                                                         aCCCAAAATAACCATTAAATTTAAAAAACATAATATAAATATAAATTTTTTAAATAAAAAAAT‑T‑AA‑AA‑‑‑‑A‑TTT‑TTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGaatttcaatttc                                                            <  1:6431246/128‑1 (MQ=255)
                                                                          aaataattatacTTTATATTTAAAATAAATTATATAAATTTAAATTTTTTAAATTAAAAAAT‑TAAA‑AA‑‑‑‑T‑TTT‑TTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGaatttcaatttc                                                            <  1:5280764/117‑1 (MQ=255)
                                                                           ccAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATAT‑T‑AC‑AA‑‑‑‑C‑TTT‑TTTTTTTTTTTTTTTAAATAAAAAATAATTTTAACAATTATTAAaattaaaatttaaa                                                          >  2:3285994/1‑125 (MQ=255)
                                                                            cAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATAT‑T‑AC‑AA‑‑‑‑CTTTT‑TTTTTTTTTTTTTTGAAATAAAATAAAATTTTAACAATTATTAAaatttaaattaaac                                                          >  1:6266128/1‑124 (MQ=255)
                                                                              aattaccaataaaaTTAAAAAAAAATTATATAAATTTAAATTTTTTAAATAAAAATTT‑T‑AA‑AA‑‑‑‑C‑‑TT‑TTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGAt                                                      <  1:3990380/117‑1 (MQ=255)
                                                                               aTTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATAT‑T‑AC‑AA‑‑‑‑C‑TTT‑TTTTTTTTTTTTTTGAAATAACATATAATTTTACCAATTATTAGAATTTAAATTTcacatct                                                      >  1:1286962/1‑125 (MQ=255)
                                                                               aTTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATAT‑T‑AC‑AA‑‑‑‑C‑‑TT‑TTTTTTTTTTTTTGGAACTAAAATATAATTTTACCAATTATTATAATTTCAATTTAACAAAtt                                                     >  2:6135216/1‑127 (MQ=255)
                                                                                 tCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATAT‑T‑AC‑AA‑‑‑‑CTTTT‑TTTTTTTTTTTTTTTAAAAAAAAAATAATTTTACCAATTATTATaatttaaatttacaaataa                                                     >  1:2728861/1‑120 (MQ=255)
                                                                                 tCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATAT‑T‑AC‑AA‑‑‑‑C‑TTT‑TTTTTTTTTTTTTGTAACTAAAATAAAATTTAACCAATTATTAAAATTTAAATTTAACatatat                                                    >  2:6511349/1‑126 (MQ=255)
                                                                                  atacTTTAAATTAAAATAAAATTATATAAATATAAATTTTTTAAATTAAAATAT‑T‑AA‑AAAT‑‑T‑TTT‑TTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATg                                                     <  2:6972936/125‑1 (MQ=255)
                                                                                   cccTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGaa                                                                                                                                            >  2:3719634/1‑47 (MQ=255)
                                                                                   cccTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATAT‑T‑AC‑AA‑‑‑‑C‑TTT‑TTTTTTTTTTTTTGGAAAAAAAAAATAATTTTACAAATTATTATaatttcaatttaaaatataaat                                                  >  2:3966029/1‑117 (MQ=255)
                                                                                   caattttattttaaaTAAAATTATATAAATTATATTTTTTTATATAAAAATAT‑T‑TA‑AA‑‑‑‑A‑TTT‑TTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAAt                                                  <  1:2856428/116‑1 (MQ=255)
                                                                                    ccTTTAAAATAAAAAAAAATTTAAAAAATATAAAATTTTTAAATAAAAAAAT‑T‑AA‑AA‑‑‑‑A‑TTT‑TTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAAtt                                                 <  2:5737461/128‑1 (MQ=255)
                                                                                    catttaaatttaaaTTAAATTTTTTAAAATAAAATTTTTTAAATAAAAATAA‑T‑AA‑AA‑‑‑‑A‑TTT‑TTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAAtt                                                 <  1:5161417/126‑1 (MQ=255)
                                                                                       ttAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATAT‑T‑AC‑AA‑‑‑‑C‑‑‑‑‑TTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTAACAGATGAATTGAttta                                           >  2:6851685/1‑127 (MQ=255)
                                                                                        tAAATTAAAATAACATTATATAAATATAAATTTTTTAAATATAAATAT‑T‑AA‑AA‑‑‑‑A‑ATT‑TTTTTTTTTTTTTGTAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATTAATTGAtt                                             <  2:3836521/128‑1 (MQ=255)
                                                                                        tAAATTAAAATAAAAATATATAAAGATAAATTTTTTAAATTAAAAAAT‑A‑AA‑AA‑‑‑‑A‑TTT‑TTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGAtt                                             <  2:1916153/128‑1 (MQ=255)
                                                                                        tAAAATCAAATAAAATTATATAAATATAAATTTTTTAAATAAAAATAT‑T‑AA‑AA‑‑‑‑‑‑‑AT‑TTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATttc                                           <  2:201608/128‑1 (MQ=255)
                                                                                         aaaTTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATAT‑T‑ACAAA‑‑‑‑A‑TTT‑TTTTTTTTTTTTTAGAAATAAAATTTAATTTTAAAAATTATTAGAATTTAAATATAAAAGATAAATTGAtt                                             >  1:5981835/1‑128 (MQ=255)
                                                                                         aaaTTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATAT‑T‑AC‑AA‑‑‑‑C‑‑TT‑TTTTTTTTTTTTTGGAAATAACATATAATTTTACCAATTTTTAGAATTACAATTTAACAGaataatatattta                                           >  1:3644814/1‑116 (MQ=255)
                                                                                            tttaaaTAAAATTATATAAATATAAATTTTTTAAATAAAAATAT‑TAAA‑AA‑‑‑‑T‑TTT‑TTTTTTTTTTTTTGTAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATttct                                          <  2:5141828/125‑1 (MQ=255)
                                                                                            ttaaattAAAATTATATTAATATAAATTTTTTAAATAAAAATAT‑T‑AA‑AA‑‑‑‑CTTTT‑TTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATttct                                          <  2:3119809/122‑1 (MQ=255)
                                                                                            ttCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATAT‑T‑AC‑AA‑‑‑‑C‑‑‑T‑TTTTTTTTATTTTGGAACAAACAAAAAATATTACCAATTATTAGAATATAAATATAACAAATTAatttatttataaa                                       >  1:1127511/1‑123 (MQ=255)
                                                                                              ataataatATATTATAAAATAAAATTTTTTAAAATAAAATATAA‑AA‑AA‑‑‑‑T‑TTT‑TTTTTTTTTTTTTGGAAATAAAATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATttcttc                                        <  1:3532525/126‑1 (MQ=255)
                                                                                                    aaaTTATATAAATTTAAATTTTTTAAATAAAAAATT‑T‑AA‑AAATTTT‑TTT‑TTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCtaa                                     <  2:1551028/126‑1 (MQ=255)
                                                                                                      aTTATATAAAGATAAATTTTTTAAAGAAAAATAT‑T‑AC‑AA‑‑‑‑C‑‑TT‑TTTTTTTTTTTTTGAAACTAAAATATAATTTTACCAATAATAATAATTTCAATTTCACAGATTAATTTATATGTACTAATAAGTTg                              >  1:4512506/1‑128 (MQ=255)
                                                                                                        ttattaattatatatTTTTTTAATATATATAT‑T‑AC‑TT‑‑‑‑A‑TTT‑TTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGt                             <  1:911330/119‑1 (MQ=255)
                                                                                                          ttttatttttatttttttAAAATAAAATAT‑T‑TA‑TA‑‑‑‑T‑TTT‑TTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCt                           <  2:219236/116‑1 (MQ=255)
                                                                                                          tataAAGATAAATTTTTTAAAGAAAAATAT‑T‑AC‑AA‑‑‑‑C‑‑‑‑‑TTTTTTTTTTTTTGGAAATAACATATAATTTTACCAATTATTAGAATTTAAATTTCACACATGAATTGATTTCTACTAATAATTTGTCtaaa                        >  1:5554270/1‑126 (MQ=255)
                                                                                                          atttatttaataTTTTTTTAATTATAATAT‑T‑TA‑AT‑‑‑‑T‑TTT‑TTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCt                           <  1:609363/117‑1 (MQ=255)
                                                                                                          aataAACATAAATTTTTTAAATAAAAATAT‑T‑AT‑AA‑‑‑‑A‑TTT‑TTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCt                           <  1:6901439/127‑1 (MQ=255)
                                                                                                           attaatttAAATTTTTTTAATAAATATAT‑T‑TA‑AA‑‑‑‑A‑TTT‑TTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCta                          <  1:667346/121‑1 (MQ=255)
                                                                                                           ataAAGATAAATTTTTTAAAGAAAAATAT‑T‑AC‑AA‑‑‑‑C‑‑TT‑TTTTTTTTTTTTTGGAACTAACATATAATTTTACAAATTATTAAAATTTCAATTTCAAAAATAAATTGATTAATTCTAATAATTTGTatat                         >  1:729693/1‑128 (MQ=255)
                                                                                                           ataAAGATAAATTTTTTAAAGAAAAATAT‑T‑AC‑AA‑‑‑‑C‑‑‑T‑TTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTATAATTTCAATTTCAAATATTAATTTATTTATTCTAATAAtttttattta                        >  2:2337471/1‑121 (MQ=255)
                                                                                                             aaatttAAATTTTTTTAACTAAAATAT‑T‑AA‑AA‑‑‑‑C‑TTT‑TTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCtata                        <  1:3352396/123‑1 (MQ=255)
                                                                                                             aaaGATAAATTTTTTAAAGAAAAATAT‑T‑AC‑AA‑‑‑‑CTTTT‑TTTTTTTTTTTTTTGAAATAAAAAATAATTTTACAAATTATTAAAATTTAAATTACACATATAAATTTATTTATTATAAAAATTTTTatat                         >  1:4082662/1‑128 (MQ=255)
                                                                                                                gATAAATTTTTTAAAGAAAAATAT‑T‑AC‑AA‑‑‑‑C‑TTT‑TTTTTTTTTTTTT‑TAACTAAAATATAATTTTACCAATTATTAAAATTTCAATTTAAAATATAAAATGATTTCATATAATAATTTTTCtatatata                    >  2:4195082/1‑126 (MQ=255)
                                                                                                                 ttataTTTTTTAAATAAAAATAT‑T‑AA‑AA‑‑‑‑A‑TTT‑TTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGa                    <  1:5742312/124‑1 (MQ=255)
                                                                                                                  tAAATTTTTTAAATAAAAATAT‑T‑A‑‑AA‑‑‑‑A‑ATT‑TTTTTTTTTTTTTGGAACTAACATATAATTTTAACAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATg                  <  2:1032544/128‑1 (MQ=255)
                                                                                                                   aaaaTTTTTAAATAAAAAAAT‑T‑TA‑AA‑‑‑‑A‑ATT‑TTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATg                  <  2:7103353/128‑1 (MQ=255)
                                                                                                                    aaTTTTTTAAATAAAAATAT‑T‑AA‑AAT‑‑‑T‑TTT‑TTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATg                  <  2:4740828/128‑1 (MQ=255)
                                                                                                                         tttAAAGAAAAATAT‑T‑AC‑AA‑‑‑‑C‑TTT‑TTTTTATTTTTTTGGAAATAACATATAATTTTACCAATTATTAAAATTAAAATTTCAAAATTAAATTTAATACTTATAATAATTTGTCTATATAAAtttttttt            >  1:3773890/1‑128 (MQ=255)
                                                                                                                          ttAAATAAAAATAT‑T‑AC‑AA‑‑‑‑A‑TTT‑TTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTta           <  2:5912957/128‑1 (MQ=255)
                                                                                                                               gAAAAATAT‑T‑AC‑AA‑‑‑‑C‑TTT‑TTTTTTTTTTTTTGAAAATAACATAAAATTTTACCAATTATTAAAATTACAATTTCACAAATTAAATTATTTATAATAATAATATTAAAATATATATGTATTTtataaat      >  1:4641761/1‑125 (MQ=255)
                                                                                                                               |                                                                                                                                            
TAATATCTCCTTAAAAATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATAT‑T‑AC‑AA‑‑‑‑C‑TTT‑TTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTAAAT  >  CP016816/76751‑77009

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑