Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816202,4810CA35.4% 502.0 / 79.5 493intergenic (+259/‑416)JCVSYN2_00840/JCVSYN2_00845hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand):  ref base C (146/144);  new base A (55/104);  total (223/270)
Fisher's exact test for biased strand distribution p-value = 1.48e-03
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 586 total aligned reads displayed.

AGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAATAAAAAAAAA‑ACAATCCCCTTTTAAA‑‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTAT‑ACCACATTTTATTTTTAAAATAAGATATTG‑ACATAATATATATCTAATATATA  >  CP016816/202354‑202606
                                                                                                                                  |                                                                                                                                 
agtGAATTTAGGGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAATAAAAAAAAA‑ACAATc                                                                                                                                   <  1:5499576/128‑1 (MQ=255)
agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAATAAAAAAAAA‑ACAATc                                                                                                                                   <  1:3301824/128‑1 (MQ=255)
agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATATATTTTATTATTTTTTTATATT‑CAC‑AAATAAAAAAAAA‑AAAATc                                                                                                                                   >  2:5456370/1‑128 (MQ=255)
agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATAACATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAATAAAAAAAAA‑ACAATc                                                                                                                                   <  2:6031413/128‑1 (MQ=255)
 gtGAAGTTAGTGTAAATTATAGATTTAAGGTTAATTAAAATAACATAAACTTAATAATTCTTATAATGTAGATACTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAATAAAAAAAAA‑ACAATcc                                                                                                                                  <  2:273641/128‑1 (MQ=255)
 gtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAATAAAAAAAAA‑ACAATcc                                                                                                                                  <  1:5985809/128‑1 (MQ=255)
  tGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAATAAAAAAAAA‑ACAATccc                                                                                                                                 <  2:6661544/128‑1 (MQ=255)
   gAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAATAAAAAAAAA‑ACAATccca                                                                                                                                >  1:6584838/1‑127 (MQ=255)
    aaGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTT‑CAC‑AAAT‑AAAAAAAA‑ACAATCCACtt                                                                                                                              >  1:6850766/1‑128 (MQ=255)
    aaGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAATAAAAAAAAA‑ACAATCCCCt                                                                                                                               <  1:3573293/128‑1 (MQ=255)
     aGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAATAAAAAAAAA‑ACAATCCCCtt                                                                                                                              <  1:2882142/128‑1 (MQ=255)
      gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATATTTTTATTTTTTTATCTT‑CAC‑AAATAAAAAAAAA‑A‑AATCACCttaa                                                                                                                            >  2:7015456/1‑126 (MQ=255)
       ttattttAAAAAATATATTTAATTTTAATTAAAATTACATAAAATTTATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTGGTTTATATT‑AAC‑AAATAAAAAAAAA‑ACAATCCCCttaa                                                                                                                            <  1:4259025/122‑3 (MQ=255)
       ttAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAATAAAAAAAAA‑ACAATCACCttaa                                                                                                                            >  1:905702/1‑126 (MQ=255)
        tAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAATAAAAAAAAA‑ACAATCCCAttaaa                                                                                                                           >  2:6139726/1‑125 (MQ=255)
         aGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAATATTAATAAA‑AAAATCCGCtaaaat                                                                                                                          >  1:2143745/1‑123 (MQ=255)
          gtgtAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTATTATATT‑CAC‑AAATAAAAAAAAA‑AAAATaccataaaaaa                                                                                                                         >  2:5618634/1‑120 (MQ=255)
          gtgtAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTAATCTATTATATAATTTATATATATT‑CAC‑AAAAAAAAAAAAA‑AAAATcaaaaaaaaaa                                                                                                                         >  1:1482740/1‑118 (MQ=255)
            gtAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATCTAGATCCTCTTTATCTATTTTTTTATTAGTTTATCTT‑CAC‑AAATAAAAAAAAA‑ACAATcccataaaaaatt                                                                                                                       >  2:570151/1‑118 (MQ=255)
               aataatAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATTTAGATCCTCGTGATCTATTTTTTTATTTTATTATCTT‑CAC‑AAATAAAAAAAAA‑ACAAACCCC‑‑Taaaa‑‑aaataaa                                                                                                                >  2:633957/1‑128 (MQ=255)
                  aataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAATAAAAAAAAA‑ACAATCCCCTT‑‑‑AA‑‑AAATaaaaaaa                                                                                                            >  1:6730968/1‑128 (MQ=255)
                  aataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAATAAAAAAAAA‑ACAATCACC‑‑Ttaaa‑‑aattaaaaaa                                                                                                             >  1:5807475/1‑128 (MQ=255)
                    taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAATAAAAAAAAA‑ACAATCCCCTT‑‑‑AA‑‑AAATaaaaaaaaa                                                                                                          >  1:1615857/1‑128 (MQ=255)
                    taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAATAAAAAAAAA‑A‑AATCCCC‑‑TTAAA‑‑AATTaaaaaaaaa                                                                                                          >  1:7221197/1‑128 (MQ=255)
                      gagTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAATAAAAAAAAA‑ACAATCCAC‑‑TTAAA‑‑AATTaaaaaaaaaa                                                                                                         >  1:6224467/1‑128 (MQ=255)
                        gTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTTTTAATCTT‑CAC‑AAAT‑AAAAAAAA‑ACAATCAAC‑‑‑TAAA‑‑AAATtaaaaaaaaaaaaa                                                                                                     >  2:3527020/1‑128 (MQ=255)
                         ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAATAAAAAAAAA‑ACAATCCCC‑‑TTAAA‑‑AAATaaaaaaaaaaaaa                                                                                                      >  1:5651337/1‑128 (MQ=255)
                         ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATACTCGTGATCTATTTTTTTATTTTTTTATCTT‑CAC‑AAATAAAAAAAAA‑AAAATACC‑‑ATTAAA‑‑AATTaaaaaaaaaaaaa                                                                                                      >  2:6892629/1‑128 (MQ=255)
                           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATCCTCGTGATCTATTTTTTTATTTTTTTATCTT‑CAA‑AAATAAAAAAAAA‑ACAATACCATT‑‑‑AA‑‑AAATaaaaaaaaaaaaaaaa                                                                                                   >  2:787965/1‑128 (MQ=255)
                           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATATT‑AAA‑AAATAAAAAAAAA‑AAAATCCAAATaaaaa‑‑aaaaaaaaaaaaaaaaa                                                                                                      >  1:3132969/1‑128 (MQ=255)
                           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAATAAAAAAAAA‑ACAATCAC‑‑‑AAAAA‑‑AAATaaaaaaaaaaaaaaaa                                                                                                   >  1:3959403/1‑128 (MQ=255)
                           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTAAATATATTTTTATCTT‑CAC‑AAAAAAAAAAAAA‑AAAATAAAAAT‑‑‑AA‑‑AAATaaaaaaaaaaaaaaaa                                                                                                   >  1:4101989/1‑128 (MQ=255)
                            agtttaattaaATAACCATAATATTAATAATTATTAATATTTATAACCTCTTGATATATTTTTTTATTTTTTTATATT‑AAA‑AAAAAAAAAAAAA‑AAAAACCCC‑‑TTAAA‑‑AATTaaaaaaaaaaaaaaaa                                                                                                   <  2:4766516/125‑1 (MQ=255)
                            aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATTTAGATCCTCTTGATCTATATTTTAATTTTTTTATCTT‑CAA‑AAATAAAAAAAAA‑AAAAACAAC‑‑TTAAA‑‑AATTaaaaaaaaaaaaaaaa                                                                                                   >  2:2912148/1‑128 (MQ=255)
                            aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAATAAAAAAAAA‑ACAATCAGC‑‑TAAAA‑‑AAATaaaaaaaataaaataa                                                                                                   >  1:6124841/1‑128 (MQ=255)
                            aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAATAAAAAAAAA‑AAAAT‑‑‑AAAATAAA‑‑AAATaaaaaaaaaaaaaaaaa                                                                                                  >  1:371090/1‑128 (MQ=255)
                             ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAATAAAAAAAAA‑ACAATCACC‑‑TTAAA‑‑AATTaaaaaaaaaaaaaaaaa                                                                                                  >  2:5651291/1‑128 (MQ=255)
                             ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAATAAAAAAAAA‑ACAAAACCC‑‑TTAAA‑‑AATTaaaaaaaaaaaaaaaaa                                                                                                  >  1:2465398/1‑128 (MQ=255)
                             ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTATTATTATTTTATCTT‑CAC‑AAATAAAAAAAAA‑ACAAACAC‑‑‑ATAAA‑‑AAATaaaaaaaaaaaaaaaaaa                                                                                                 >  1:4910748/1‑128 (MQ=255)
                              gTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATCCTCGTGATCTATTTTTTTATTTTTTTATCTT‑AAC‑AAATAAAAAAAAA‑AAAAT‑‑‑AAAATAAA‑‑AAATaaaaaaaaaaaaaaaaaaa                                                                                                >  1:2286/1‑128 (MQ=255)
                                taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAATAAAAAAAAACCCAATCCCC‑‑GTAAA‑‑AATTaaaaaaaaaaaaaaaaaaa                                                                                                >  1:6414004/1‑128 (MQ=255)
                                taattaaAAAAACATAAACATAAAAATTATTATAATTTTTATCCTAGTGATATATTTTTTTATTTTTTTATCTT‑AAC‑AAAAAAAAAAAAA‑ACAATCCCC‑‑TTAAA‑‑AATTaaaaaaaaaaaaaaaaaact                                                                                               <  2:534433/128‑3 (MQ=255)
                                 aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAATAAAAAAAAA‑ACAAACACC‑‑TAAAA‑‑AATTaaaaaaaaaaaaaaaaaaaaa                                                                                              >  1:1942832/1‑128 (MQ=255)
                                 aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAATAAAAAAAAA‑ACAAAAAC‑‑‑ATAAA‑‑AAATaaaaaaaaaaaaaaaaaaaaaa                                                                                             >  2:6543912/1‑127 (MQ=255)
                                 aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTATTATTTGTTTATCTT‑CAA‑AAATAAAAAAAAA‑ACAATAAC‑‑ATAAAA‑‑AAATaaaaaaaaaaaaaaaaaaaaa                                                                                              >  2:2274444/1‑128 (MQ=255)
                                  ataaaaaaaACAAAAACTTAAAAATTTTTATAATTTATATCCTCGTTTTATATTTTTTTTTTTGTTTATTTT‑CAC‑AAAAAAAAAAAAA‑AAAATCCCC‑‑TTAAA‑‑AATTaaaaaaaaaaaaaaaaaaacta                                                                                             <  1:6058087/125‑4 (MQ=255)
                                  aataaaataaaaAAAAATTAAAAAATAATAAAATTTATATACACGTTATTAATTTTTTTATTTTTTTATATT‑AAA‑AAATAAAAAAAAA‑ACAATCCCC‑‑TTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAAc                                                                                             <  2:2605388/126‑1 (MQ=255)
                                   ttaaAATACCATAAACTTAATAATTCTTATAATGTAAATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAATAAAAAAAAA‑ACAAACCC‑‑AAAAAA‑‑AATTaaaaaaaaaaaaaaaaaaaaaaa                                                                                            >  1:1776632/1‑126 (MQ=255)
                                   ttaaAATACCATAAACTTAATAATTATTATAATCTAAATAAACTTGATCTATTTTTATATATATTTATATT‑CAC‑AAATAAAAAAAAA‑AAAA‑‑AACAAATAAA‑‑AAATaaaaaaaaaaaaaaaaaaaaaaa                                                                                            >  1:2645524/1‑126 (MQ=255)
                                   ttaaAAAAACATAAACTTAATAATTATTAATATTTATTTCCTCGTGATCTATTTTTTTTTTTTTTTATCTT‑AAC‑AAAAAAAAAAAAA‑ACAATCCCC‑‑TTAAA‑‑AATTaaaaaaaaaaaaaaaaaaaaaac                                                                                            <  2:4332857/128‑3 (MQ=255)
                                    taaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAATAAAAAAAAA‑ACAAACCAC‑‑TAAAA‑‑AATTaaaaaaaaaaaaaaaaaaaaaaat                                                                                           >  1:7124475/1‑125 (MQ=255)
                                    taaAATAACATAAAATATAAAAATCATATAAATTACATACTAGTTTACTATTTTTTTATTTTTTTAAATT‑AAA‑AAAAAAAAAAAAA‑ACAATCCCCTT‑‑‑AA‑‑AAATTAAAAAAAAAAAAAAAAAAAACTaa                                                                                          <  2:5172167/128‑1 (MQ=255)
                                     taaaaaaaaTAAATTTTATAATTATTTTAATTTAATTACTAGTGTTTAATTTTTTTATTTTTTTATTTT‑AAA‑AAATAAAAAAAAA‑AAAATACCC‑‑TTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTaa                                                                                          <  2:6478245/120‑1 (MQ=255)
                                     aaaaTACCATAAACTTAAAAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAATAAAAAAAAA‑ACAAACACCATAAAAA‑‑Taaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                            >  1:4610886/1‑126 (MQ=255)
                                      aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAATAAAAAAAAA‑AAAATACC‑‑ATTAAA‑‑AATTaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                         >  1:103862/1‑123 (MQ=255)
                                      aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCAT‑CAC‑AAATAAAAAAAAA‑ACAATCCCCTTAAAAA‑‑Taaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                           >  1:3795817/1‑125 (MQ=255)
                                      aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATATT‑CAC‑AAATAAAAAAAAA‑AAAATAACC‑‑TTAAA‑‑AATTaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                         >  1:7027388/1‑123 (MQ=255)
                                       aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAATAAAAAAAAA‑ACAATCACC‑‑TTAAA‑‑AATTAaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                        >  2:5522187/1‑128 (MQ=255)
                                       aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAATAAAAAAAAA‑A‑AAAATACAATAAAA‑‑AATTaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                         >  2:7101663/1‑123 (MQ=255)
                                         tACCAAAAAATTAAAAATTCTTATAATTTATATCCTTGGTATTTATTTTTTTATTTTTTTTTATT‑AAA‑AAAAAAAAAAAAA‑AAAAACCCC‑‑TTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTAAaaac                                                                                      <  1:6262784/128‑1 (MQ=255)
                                            caaaaaCTTAATAATTAATAAAATTTATAATCACGTTATATAATTTTTTATTTTTTTATATT‑AACAAAAAAAAAAAAAA‑ACAAACCCC‑TTAAAA‑‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                     <  2:4438101/125‑1 (MQ=255)
                                            cATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATATT‑AAC‑AAATAAAAAAAAA‑ACAAT‑CCCATTAAAA‑‑ATTAAAAAAAAAAAAAAAAAAAAAACTaaaaaaaa                                                                                    >  2:1468544/1‑128 (MQ=255)
                                                aaattAATAATTATTATAATTTATATACACGTTTTATATTTTTTTATTTTTTTAAAAT‑AAA‑AAAAAAAAAAAAA‑AAAAACCCC‑‑TTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAActct                                                                               <  2:86502/125‑1 (MQ=255)
                                                aaattAATAATAATAAAAATTTAAAACCACGTGTTCTATTTTTTTATTTTTTAAATAT‑CAA‑AAATAAAAAAAAA‑AAAAACCCCTT‑‑‑AA‑‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                              <  2:2369063/125‑1 (MQ=255)
                                                  attAAAAATTTTTATAATTTTTATACTCGTGTTTTATTTTTTTTTTTTTTTTTTAA‑AAC‑AAAAAAAAAAAAA‑AAAATCCCC‑TTAAAA‑‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                              <  1:5526332/127‑1 (MQ=255)
                                                   ttAAAAATTATTATAATTTAAAAAATCTTTATATATTTTTTTATTTTTTTATATT‑CAA‑AAAAAAAAAAAAA‑AAAAACCCC‑‑TTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTAtt                                                                            <  2:1207669/128‑1 (MQ=255)
                                                          ttattAAAATTTAGATCCTCGTTATATATTTTTTTATTTTTTTATATT‑AAC‑AAAAAAAAAAAAA‑ACAATCACC‑TTAAAA‑‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTaa                                                                      <  2:403655/125‑1 (MQ=255)
                                                                        aaactactGATCTATTTTTTTATTTTTTTATATT‑CAC‑AAAAAAAAAAAAA‑AAAAACCCC‑‑TTAAA‑‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTAT‑Ac                                                      <  2:3267844/121‑1 (MQ=255)
                                                                          tattttatttttttttttttttttttTATATA‑AAA‑AAAAAAAAAAAAA‑AAAAAACCCTTAAAAATTAAAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtattat                                                         <  2:6106907/116‑1 (MQ=255)
                                                                          tactcagtattataTTTTTATTTTTTTTAATA‑TAC‑AAAAAAAAAAAAA‑AAAAATAAC‑TATAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTAT‑Acc                                                     <  2:1628874/118‑1 (MQ=255)
                                                                           tatttttattatttttttattt‑tttATCAT‑AAA‑AAATAAAAAAAAA‑AAAAACCCCTTAAAAA‑‑ATAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTAT‑ACca                                                    <  2:6282886/119‑1 (MQ=255)
                                                                           ctgctttttttattttttttttttttttATT‑AAA‑AAATAAAAAAAAA‑AAAATACCC‑TTAAAA‑‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTAT‑ACca                                                    <  1:805160/116‑1 (MQ=255)
                                                                           cacttttaatATTTTTTTAATTTTTAATATTAAAA‑AAAAAAAAAAAAA‑AAAAACCCCATAAAAA‑‑TTAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTAT‑Ac                                                      <  2:3897685/119‑1 (MQ=255)
                                                                           cTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAATAAAAAAAAA‑ACAATCCCC‑‑TTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAACTAAATTTATTAAAATACAATATTAA‑Acaaa                                                   >  1:5720269/1‑125 (MQ=255)
                                                                            tttttatttatttttttattttttTTTATT‑AAA‑AAATAAAAAAAAA‑A‑AATCCCCTT‑‑‑AA‑‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTAT‑ACCACatt                                                <  1:3527020/120‑1 (MQ=255)
                                                                            tgtttaatttttttttttttttttttTATT‑AAC‑AAA‑AAAAAAAAA‑AAAATTCCCTTT‑‑‑A‑‑AAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTAT‑ACCACattt                                               <  2:179020/118‑1 (MQ=255)
                                                                            tatttatatATTTTTTTTTTTTTTTATTAT‑AAA‑AAAAAAAAAAAAA‑AAAATACAC‑‑ATAAA‑‑AATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTAT‑ACcaca                                                  <  2:6799158/120‑1 (MQ=255)
                                                                            tagttatatATTTTTTTATATTTTAATAAT‑AAA‑AAAAAAAAAAAAA‑AAAATCCCCTT‑‑‑AA‑‑AAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTAT‑ACCACatt                                                <  2:6257581/120‑1 (MQ=255)
                                                                             tttatttatttttttttttttttTAT‑TT‑AAA‑AAATAAAAAAAAA‑AAAATATCC‑‑TTAAA‑‑AATTTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTAT‑ACCACatt                                                <  2:3369080/119‑1 (MQ=255)
                                                                             tcttatttaatttttaATTTGTATAAAAT‑AAA‑AAATAAAAAAAAA‑AAAATACAC‑‑TAAAA‑‑AATTATAAAAAATAAAAAAAAAAAATTAAAAACAAACTCTATTTCTTAAAATTCCCTATTAT‑ACCACat                                                 <  2:5015591/118‑1 (MQ=255)
                                                                                ttttaaTTTTTTTTTTTTTTTAAATT‑AAA‑AAATAAAAAAAAA‑AAAATACCC‑‑TTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTAT‑ACCACatttt                                              <  2:5912438/123‑1 (MQ=255)
                                                                                gttatATTTTTTTATTTGTTTATATT‑AAA‑AAATAAAAAAAAA‑ACAAACCCC‑TAAAAA‑‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTAT‑ACCACattt                                               <  2:2051443/124‑1 (MQ=255)
                                                                                 tattATTTTTTTTTTTTTTTTTTTT‑TAA‑AAATAAAAAAAAA‑AAAAATCAC‑CATAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTAT‑ACCACatttt                                              <  1:5872932/125‑1 (MQ=255)
                                                                                  ttttttttttttttttttttttAT‑AAA‑AAATAAAAAAAAA‑AAAAACCCTTTAAAAA‑‑ATAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTAT‑ACCACatttt                                              <  1:6971654/124‑1 (MQ=255)
                                                                                     attattATATTTTTTTAACTT‑AAA‑AAATAAAAAAAAA‑ACAATCCCCTT‑‑‑AA‑‑AAAT‑‑TAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTAT‑ACCACATTTTATTTTTaa                                      <  2:3606459/128‑1 (MQ=255)
                                                                                      atttttaTTTTTTTTATAAT‑AAA‑AAAAAAAAAAAAA‑AAAATCCCCTT‑‑‑AA‑‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTAT‑ACCACATTTTATTTTTa                                       <  2:1356920/127‑1 (MQ=255)
                                                                                       ttttttttttttttATTTT‑AAA‑AAAAAAAAAAAAA‑AAAAACCCCAT‑‑‑AA‑‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTAT‑ACCACATTTTATTTTTaa                                      <  1:4961623/128‑1 (MQ=255)
                                                                                             aTTTTTTTTTATT‑AAA‑AAATAAAAAATAA‑ACAATACC‑‑TTT‑AA‑‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTAT‑ACCACATTTTATTTTTAAAATAAg                                <  1:5457284/128‑1 (MQ=255)
                                                                                             aTTTTTTTATATT‑‑AA‑AAAAAAAAAAAAA‑AAAAACCCC‑‑TTAAA‑‑AATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTAT‑ACCACATTTTATTTTTAAAATAAg                                <  2:242526/128‑1 (MQ=255)
                                                                                              atttttaaTCTT‑CA‑‑AAAAAAAAAAAAA‑AAAAACCCACTTTAAA‑‑AATAAAAAAAAAAAAAAAAAAAATACTAAACACAAACTCTATTTCTTAAAATTCCCTATTAT‑ACCACCTTTTATTTTTAAAATaa                                 <  2:3010051/121‑1 (MQ=255)
                                                                                               ttttttATATT‑AAC‑AAATAAAAAAAAA‑ACAATACCC‑‑TTAAA‑‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTAT‑ACCACATTTTATTTTTAAAATAAGa                               <  2:493354/125‑1 (MQ=255)
                                                                                                  tttATCTT‑CAC‑AAATAAAAAAAAA‑ACAATCCCC‑‑TTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAACTCTTTTATTTAAAATAACAAATTAT‑ACAAAATTTTATTTTTAAAATaataatt                            >  1:6374040/1‑123 (MQ=255)
                                                                                                    tATCTT‑CAC‑AAATAAAAAAAAA‑ACAATCCCC‑‑TTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAA‑TAAAAACAAACTATATTTATTAAAATT‑ACAATTATAAAAAAATTTTATTTTTAAAATAATATAttaa                         >  2:5958431/1‑126 (MQ=255)
                                                                                                       atattaaaaaaTAAAAAAAAA‑AAAAATCCCCTTAAAA‑‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTAT‑ACCACATTTTATTTTTAAAATAAGATAtt                           <  2:6404478/120‑1 (MQ=255)
                                                                                                           ttaaaaaTTAAAAAAAA‑AATTTTTCCCTTTAAA‑‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTAT‑ACCACATTTTATTTTTAAAATAAGATATTG‑ACa                      <  2:4198845/124‑1 (MQ=255)
                                                                                                           attaaaaaaaaaaaaaa‑aaaaaaaCCCATTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTAT‑ACCACATTTTATTTTTAAAATAAGATATTG‑ACa                      <  2:4512229/124‑1 (MQ=255)
                                                                                                            aaaaaaTAAAAAAAAA‑AAAAACCCC‑‑ATAAA‑‑AAAT‑‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTAT‑ACCACATTTTATTTTTAAAATAAGATATTG‑ACataata                 <  2:192180/125‑1 (MQ=255)
                                                                                                             aaaaaaaaaaaaaaa‑aaaaaaaACCTTAAAA‑‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTAT‑ACCACATTTTATTTTTAAAATAAGATATTG‑ACata                    <  2:582233/126‑1 (MQ=255)
                                                                                                               aaaTAAAAAAAAA‑ACAATCCCC‑‑TTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAAAAAAACCCAACAATTATTTATAAAAAATACAAAATTT‑ACCAAAATTTATTTTTTAAATAATAAATTG‑ACAAAatat                >  2:3757588/1‑128 (MQ=255)
                                                                                                                        aaaa‑aCAATCCCCTT‑‑‑AA‑‑AAATTAAAAAAAAAAAAAAAAAAAA‑TAAAAACAAACAGATATTCTTAAAAAACCCTATTTA‑ACCAAATTTTATTTTTAAAATAATA‑ATTGTAAATAAAATATATCTAattt     >  1:5410410/1‑126 (MQ=255)
                                                                                                                                  |                                                                                                                                 
AGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAATAAAAAAAAA‑ACAATCCCCTTTTAAA‑‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTAT‑ACCACATTTTATTTTTAAAATAAGATATTG‑ACATAATATATATCTAATATATA  >  CP016816/202354‑202606

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑