Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816202,4850T.74.4% 1104.5 / inf 910intergenic (+263/‑412)JCVSYN2_00840/JCVSYN2_00845hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand):  ref base T (46/157);  new base . (223/367);  total (312/598)
Fisher's exact test for biased strand distribution p-value = 7.33e-05
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.86e-01

Only 100 of 1003 total aligned reads displayed.

AAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTT‑AATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAATAAAAAAAAAACAATCCCCTTTTAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATAT  >  CP016816/202358‑202607
                                                                                                                                 |                                                                                                                            
 aGTTAGTGTAAATAATATAGTTAAGGTTAATTAAAATACCATAAACTT‑AATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAATAAAAAAAAAACAATCCCCtt                                                                                                                             <  1:7192018/128‑1 (MQ=255)
      gtgtAAATAATAGAGTTAAGGTTAATTAATATACCATAAACTT‑AATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAATAAAAAAAAAACCATCACCttaaaaa                                                                                                                        >  1:8452472/1‑123 (MQ=255)
          aaaTAATAGAGTTAAGGTTAATTAAAATACCATAAACTT‑AATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAATAAAAAAAAAACAAACCC‑‑ATtaaa‑aaataa                                                                                                                 >  2:8366056/1‑128 (MQ=255)
            ataataGAGTTAAGGTTAATTAAAATACCATAAACTT‑AATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAAAAATAAAAAAAAAACAAACCAC‑‑Taaaa‑aaataaaa                                                                                                               >  1:3130976/1‑128 (MQ=255)
             taataGAGTTAAGGTTAATTAAAATACCATAAACTT‑AATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAACAATCCCC‑‑Ttaaa‑aattaaaaaa                                                                                                             >  2:1045807/1‑128 (MQ=255)
              aataGAGTTAAGGTTAATTAAAATACCATAAACTT‑AATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAATAAAAAAAAAACAATACCC‑‑Ttaaa‑aattaaaaaa                                                                                                             >  2:9165057/1‑128 (MQ=255)
              aataGAGTTAAGGTTAATTAAAATACCATAAACTT‑AATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAATAAAAAAAAAACAAACCCC‑‑Ttaaa‑aattaaaaaa                                                                                                             >  1:9747631/1‑128 (MQ=255)
                 agagTTAAGGTTAATTAAAATACCATAAACTT‑AATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAATAAAAAAAAAACAATCCCC‑‑ATAAA‑AAATaaaaaaaaa                                                                                                          >  1:2731718/1‑128 (MQ=255)
                    gTTAAGGTTAATTAAAATACCATAAACTT‑AATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAATAAAAAAAAAACAATCCCC‑‑ATAAA‑AAATaaaaaaaaaaaa                                                                                                       >  1:8656861/1‑128 (MQ=255)
                    gTTAAGGTTAATTAAAATACCATAAACTT‑AATAATTCTTATAATGTAGATCCTCGTGATCTATTATTTTATTTGTTTATCTT‑CACAAATAAAAAAAAAACAATCAC‑‑ATTAAA‑AATTaaaaaaaaaaaa                                                                                                       >  1:1185975/1‑128 (MQ=255)
                     ttAAGGTTAATTAAAATACCATAAACTT‑AATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAATAAAAAAAAAAAAAT‑‑‑CAAATAAA‑AAATtaaaaaaaaaaaaa                                                                                                     >  2:907721/1‑128 (MQ=255)
                      tAAGGTTAATTAAAATACCATAAACTT‑AATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaa                                                                                                     >  1:10014824/1‑128 (MQ=255)
                       aaGGTTAATTAAAATACCATAAACTT‑AATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTTTTTATCTT‑CACAAATAAAAAAAAAAAAATACC‑‑ATTAAA‑AATTaaaaaaaaaaaaaaa                                                                                                    >  1:2526811/1‑128 (MQ=255)
                       aaGGTTAATTAAAATACCATAAACTT‑AATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CACGAATAAAAAAAAAAAAATCACC‑‑TTAAA‑AATTaaaaaaaaaaaaaaa                                                                                                    >  2:8945890/1‑128 (MQ=255)
                       aaGGTTAATTAAAATACCATAAACTT‑AATAATTCTTATAATGTAGATCCTCGAGATCTATTTTATTATTTAATTATATA‑AACAAAAAAAAAAAAAAAAA‑‑ACAAATAAAA‑AAATaaaaaaaaaaaaaaa                                                                                                    >  1:483585/1‑128 (MQ=255)
                         ttttaaataaAATAAAATAAACTT‑AATAATTATTAAAATTTTTAACCATGTGTTATATTTTTTTTTTTTTTTATAAT‑AAAAAATAAAAAAAAAAAAAACCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaaa                                                                                                  <  2:3637408/126‑1 (MQ=255)
                         ggTTAATTAAAATACCATAAACTT‑AATAATTCTTATAATTTAGATACTATTGATCTATTTTTTTATTTGTTTATATT‑CACAAATAAAAAAAAAAAAAAAACCAAAAAAA‑AATTaaaaaaaaaaaaaaa                                                                                                    >  1:3532153/1‑128 (MQ=255)
                         ggTTAATTAAAATACCATAAACTT‑AATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAATAAAAAAAAAACAATCACC‑‑‑TAAA‑AAATtaaaaaaaaaaaaaaaaa                                                                                                 >  2:8892657/1‑128 (MQ=255)
                         ggTTAATTAAAATACCATAAACTT‑AATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAATAAAAAAAAAACAATCACC‑‑‑TAAA‑AAATtaaaaaaaaaaaaaaaaa                                                                                                 >  2:10353371/1‑128 (MQ=255)
                         ggTTAATTAAAATACCATAAACTT‑AATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAATAAAAAAAAAAACAAACC‑‑AATAAA‑AAATaaaaaaaaaaaaaaaaa                                                                                                  >  2:8068278/1‑128 (MQ=255)
                          tttaattaaAATAAAATAAAATT‑AATAATTATAAAAATTTATATACTATTTTTCTATTTTTTTATTTTTTTATATT‑AACAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaaaa                                                                                                 <  2:5146364/127‑1 (MQ=255)
                          gTTAATTAAAATACCATAAACTT‑AATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTT‑CACAAATAAAAAAAAAAAAAAAAC‑‑ATAAAA‑AAATaaaaaaaaaaaaaaaaaa                                                                                                 >  1:2881798/1‑128 (MQ=255)
                           ttaattaaAATACCATAAACTT‑AATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAATAAAAAAAAAAAAAAAAAATT‑‑‑AA‑AAATaaaaaaaaaaaaaaaaaaaa                                                                                               >  2:7973214/1‑128 (MQ=255)
                           gtaattaaAATAACAAAAACAT‑AAAAATTATTATAATTTATAAACACGTTATAAATTTTTTTATTTTTTTATATTAAAAAAAAAAAAAAAAAACAAACCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaaaa                                                                                                 <  2:985519/127‑1 (MQ=255)
                            taattaaAATACCATAAACTT‑AATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAATAAAAAAAAAACAAACCCATT‑‑‑AA‑AAATaaaaaaaaaaaaaaaaaaaaa                                                                                              >  2:1140917/1‑128 (MQ=255)
                             aattaaAATACCATAAACTT‑AATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTT‑CACAAATAAAAAAAAAACCATCCCC‑‑TAAAA‑AAATaaaaaaaaaaaaaaaaaaaaa                                                                                              >  1:7896108/1‑128 (MQ=255)
                             aattaaAATACCATAAACTT‑AATAATTCTTATAATGAAGATCCACGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAATAAAAAAAAAAAAAAACCATTAAAAA‑Taaaaaaaaaaaaaaaaaaaaaa                                                                                                >  1:7981354/1‑128 (MQ=255)
                              attaaAATACCATAAACTT‑AATAATTCTTATAATTTAGATCCTCGTGATCTATTTTTTTATTTTTTTATATT‑CACAAATAAAAAAAAAAAAATACCCTaaaaaa‑aaaaaaaaaaaaaaaaaaaaaaaa                                                                                               >  1:5826433/1‑128 (MQ=255)
                              attaaAATACCATAAACTT‑AATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAATAAAAAAAAAACAATCCCC‑‑‑AAAA‑AAATaaaaaaaaaaaaaaaaaaaaaaa                                                                                            >  1:5330051/1‑126 (MQ=255)
                              attaaAATACCATAAACTT‑AATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATATGTTTATCTA‑CACAAATAAAAAAAAAACTAACC‑‑‑AAAAAA‑ATATaaaaaaaaaaaaaaaaaaaaaaa                                                                                            >  1:3389491/1‑126 (MQ=255)
                               ttaaAATACCATAAACTT‑AATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAAAAATAAAAAAAAAAAAATCCAC‑‑TAAAA‑AATTaaaaaaaaaaaaaaaaaaaaaaa                                                                                            >  2:2161544/1‑126 (MQ=255)
                                 aaaaTACCATAAACTT‑AATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAATAAAAAAAAAAAAAACCC‑‑ATAAAA‑AATTaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                          >  1:6765196/1‑124 (MQ=255)
                                  aaaTACCATAAACTT‑AATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTATTTATCTT‑CACAAATAAAAAAAAAAAAA‑‑AAAAATTAAA‑AATTaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                         >  1:6188391/1‑123 (MQ=255)
                                   aaTACCATAAACTT‑AATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑AACAAATAAAAAAAAAACAATAAAC‑‑TTAAA‑AATTAaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                        >  2:3882174/1‑128 (MQ=255)
                                   aaTAACATAAAATT‑AATAATTTTTTTAATGTAGTTACTCGTGATATATTTTTTTTTTTTTTTATCTT‑AAAAAATAAAAAAAAAACAAACCCCTT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTaaaaa                                                                                       <  2:9243336/128‑1 (MQ=255)
                                    attacATAAAATT‑AATAATTATTAAAATGTATAAACTATTTATATAATTTTTTATTTTTTTATATT‑CA‑AAAAAAAAAAAAAAAAATCCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAaaac                                                                                      <  2:7564726/124‑1 (MQ=255)
                                    aTAACATAAAATT‑AATAATAATTATAATTTATAAAATAGTTAAATATTTTTTTATTTTTTTAAAAT‑AAAAAAAAAAAAAAAAAAAAACCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTaaaaa                                                                                       <  2:1711142/128‑1 (MQ=255)
                                     tacaaaaaaaTT‑AATAAATATTAAAATTTATTACCTAGTTTTTTATTTTTTTTTTTTTTTATCAT‑CAAAAAAAAAAAAAAAAAAATACCCTT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAaaac‑a                                                                                    <  1:3978273/122‑1 (MQ=255)
                                     taaaaTAAAATTAAATAATT‑TTATAATTTATATACACATTATATATTTTTTTTTTTTTTTATATA‑AAAAAAAAAAAAAAAAAAAAACCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAaaac                                                                                      <  2:6722654/124‑1 (MQ=255)
                                      aCCATAAACTT‑AATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CACATATAAAAAAAAAACAATCCCCTTAAAAATTAAAAAAAAAAAAAAAAAAAAAAAACTaaaa                                                                                        >  1:8806609/1‑128 (MQ=255)
                                         aaaaaaTT‑AATAATTATTTAAAATTACAACATCGTTTTATATTTTTTTATTTTTTTAAATT‑AAAAAAAAAAAAAAAAAAAAACCCC‑TTAAAA‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAaaac‑aaa                                                                                  <  2:3102962/126‑1 (MQ=255)
                                          taaaaat‑aattaTTTTTAAAATTTATAAACACGTGATAAATTTTTTTATTTTTTTAACAT‑CACAAAAAAAAAAAAAAAAAACCCC‑TTAAAA‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAaaac‑aaac                                                                                 <  2:5725451/122‑1 (MQ=255)
                                            aaatt‑AATATATATTATAATTTATAAACTAGTTATTTATTTTTTTATTTTTTTATATT‑CAAAAAAAAAAAAAAAAAAATCCCC‑‑ATAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAActct                                                                              <  2:10014002/125‑1 (MQ=255)
                                             atctttaaaatTATTATAATTTATATTCAAGTTTTCTATTTTTTTATTTTTTTATCTT‑CAAAAATAAAAAAAAAACAATCCCCTT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTa                                                                             <  2:8161373/120‑1 (MQ=255)
                                             aaataaataatTATTATAATTTATATACATTTTATCAATTTTTTTATTTTTTTAAATT‑AAAAAAAAAAAAAAAAAAAAACCCCTT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTa                                                                             <  2:5826724/123‑1 (MQ=255)
                                              att‑AATAATTCTTAAAATTTATAACCAAGTTATATATTTTTTTATTTTTTAAAAAT‑AAAAAAAAAAAAAAAAAAAATCCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTAt                                                                            <  2:3456242/127‑1 (MQ=255)
                                              aat‑aaaaaTTATTAAAATTTATAACATCCTTAACTATTTTTTTAATTTTTTATAAT‑AAAAAAAAAAAAAAAAAAAAAACCC‑TTAAAA‑AATAAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTa                                                                             <  2:4525583/126‑1 (MQ=255)
                                                  aataatTTTTATAATTTAGATCCTCGTGATATATTTTTTTTTTTTTTTATTTT‑CAAAAATAAAAAAAAAACAATACCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTc                                                                         <  2:8112843/128‑1 (MQ=255)
                                                  aataatTCTTATAATTTATATCCTTCTGATATTTTTTTTTATTTTTTTATATT‑AACAAATAAAAAAAAAAAAATCCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTc                                                                         <  2:7784448/128‑1 (MQ=255)
                                                                  tatatactctttaTCTATTTTTTTATTTTTTTATCTT‑CAAAAATAAAAAAAAAACAATCCCCTT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCtattat                                                        <  2:6292566/116‑1 (MQ=255)
                                                                   tgATCCCCGTGTTCTATTTTTTTATTTTTTTATCTA‑CACAAAAAAAAAAAAAACAAACCCC‑‑ATAAA‑AAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATtata                                                       <  1:8549668/127‑1 (MQ=255)
                                                                   taaTCCTCTTTATATATTTTTTTATTTTTTTTAATT‑AACAAAAAAAAAAAAAAAAAACCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCtattat                                                        <  2:3236818/126‑1 (MQ=255)
                                                                     aaactagttatatATTTTTTTTTTTTTTTATATT‑AAAAAAAAAAAAAAAAAAAATCCCCTTAAAAA‑TTAAAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCtattat                                                        <  2:8836449/116‑1 (MQ=255)
                                                                       aatatttattaatttttttatttttttATATT‑AAAAAATAAAAAAAAAAAAATAAAC‑‑TTAAA‑AATAAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACca                                                    <  2:9620251/117‑1 (MQ=255)
                                                                        tctttatataaTTTTTTTATTT‑TTTATAAT‑ACAAAATAAAAAAAAAAAAATCCAC‑TTAAAA‑AATAAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACcac                                                   <  2:7898227/118‑1 (MQ=255)
                                                                        ctagttatttatttttttattttttTAAATT‑CAAAAATAAAAAAAAAAAAATCCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACcac                                                   <  1:8907076/119‑1 (MQ=255)
                                                                         tatttataaaTTTTATTAATTTTTTATAAT‑AAAAAAAAAAAAAAAAAAAAAACCC‑‑ATAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACcaca                                                  <  2:8558300/119‑1 (MQ=255)
                                                                           tttatatatttttttattttttTATATT‑AAAAAAAAAAAAAAAAAAAATACCC‑‑TTAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                                <  2:2988868/122‑1 (MQ=255)
                                                                           ttattaattttttttATTTTTATA‑CTA‑AAAAAAAAAAAAAAAAAAAATACCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                               <  2:10276346/120‑1 (MQ=255)
                                                                            ttatatatttttttattttttTATATT‑AAAAAAAAAAAAAAAAAAAATCCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                               <  2:3737489/123‑1 (MQ=255)
                                                                             ttttttttttttttttttttttTATT‑ATCAAAAAAAAAAAAAAATATATCC‑TTTAAA‑ATTTAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                               <  2:101548/122‑1 (MQ=255)
                                                                             ttttattttttttattttttta‑AAT‑AACAAAAAAAAAAAAAAAAAACCCCAAAAAAA‑ATAAAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                               <  1:9139454/122‑1 (MQ=255)
                                                                             ttttaaTTTTTTTTTTTTTTTATATT‑TA‑AAAAAAAAAAAAAAAAAAATCCACTTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                               <  2:8745658/123‑1 (MQ=255)
                                                                             tatttatttttttattttttTATATA‑AAAAAAAAAAAAAAAAAAAATCACC‑‑TTAAA‑AAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                             <  1:2092972/124‑1 (MQ=255)
                                                                              tttattttttttatttttttaTTTT‑AAAAAAAAAAAAAAAAACAAT‑‑CCAATTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                             <  2:1467940/123‑1 (MQ=255)
                                                                               tCTATTTTTTTATTTGTTTATCTT‑CACAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAACCTAAAAAC‑AAAATATATTTATTAAAATTCACTATATAACAACattttat                                            >  1:9618419/1‑128 (MQ=255)
                                                                               attttttttttatttttttaTATT‑AAAAAAAAAAAAAAAAAAAAAACAC‑TTAAAA‑AATAAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                             <  2:8645424/124‑1 (MQ=255)
                                                                                  tttttttttttTGTTAAATTT‑AAAAAAAAAAAAAAAAAAAATACC‑‑ATTAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                         <  2:2335908/127‑1 (MQ=255)
                                                                                  atttttttatttttttAAAAT‑AAAAAAAAAAAAAAAAACAATCCCC‑‑TTAAA‑AATAAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                         <  2:4291674/128‑1 (MQ=255)
                                                                                  aTTTTTTTATTTGTTTATATT‑AACAAATAAAAAAAAAAAAAATACATT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                       <  1:9492180/128‑1 (MQ=255)
                                                                                     ttattATTTTTTTATTTA‑CAAAAAAAAAAAAAAAACAATCCC‑‑ATTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                      <  2:1308373/125‑1 (MQ=255)
                                                                                       tttATTTGTTTATTAT‑AAAAAAAAAAAAAAAAAAAATCACC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaaa                                    <  1:10211581/128‑1 (MQ=255)
                                                                                       tttATTTGTATATAAT‑AAAAAAAAAAAAAAAAACAAACCAC‑‑ATAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaaa                                    <  2:5414438/128‑1 (MQ=255)
                                                                                        ttATTTTTTTAAGTT‑AAAAAAAAAAAAAAAAACAATCCCC‑‑TTAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAAt                                   <  2:493838/128‑1 (MQ=255)
                                                                                         tATTTTTTTATATT‑CCAAAAAAAAAAAAAAACAAACCCCTTAAAAA‑TTACAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaaa                                    <  2:7203421/128‑1 (MQ=255)
                                                                                         tATTTTTTTAAATT‑AAAAAAAAAAAAAAAAAAAATACAC‑‑TAAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                                  <  2:9754611/128‑1 (MQ=255)
                                                                                          aTTTTTTTTTATT‑AAAAAAAAAAAAAAAAAAAATAACC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                                 <  2:196749/128‑1 (MQ=255)
                                                                                          aTTTGTTTATCTT‑CACAAATAAAAAAAAAACAAACCCC‑TTAAAA‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAAGAATATAAAAAAAAATACACTATAAAACCAAATTTAATTTATaaataa                                  >  1:5536360/1‑125 (MQ=255)
                                                                                           tttGTATATATT‑AAAAAATAATAAAAAAAAAAACTCGTT‑‑‑AA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                               <  2:648156/128‑1 (MQ=255)
                                                                                              ttttATCTT‑AAACAATAAAAAAAAAAAAAACCCCTAT‑‑AA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                             <  1:9924224/127‑1 (MQ=255)
                                                                                               tataaacttaaaaaaaaaaaaaaaaaaaATACCC‑‑TTAAA‑AATAAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                             <  2:6976557/116‑1 (MQ=255)
                                                                                                ttATATT‑TAAAAAAAAAAAAAAAAAAATACACATAAAAA‑TTAAAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAAATCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                             <  1:9023296/128‑1 (MQ=255)
                                                                                                 ttttattaaaaaaTAAAAAAAAAAAAATACAC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                           <  2:6151621/118‑1 (MQ=255)
                                                                                                 ttttaataaaaaaaaaaaaaaaaaaaaaACCCTTAAAAA‑TTAAAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                             <  2:9364527/118‑1 (MQ=255)
                                                                                                   tatt‑CAAAAATAAAAAAAAAAAAATACCCTT‑‑‑AA‑AAAT‑‑‑TAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataa                    <  2:9501291/126‑1 (MQ=255)
                                                                                                    attaaaaaaaTAAAAAAAAAATAAAACC‑‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                       <  1:1385741/121‑1 (MQ=255)
                                                                                                     tt‑CAAAAATAAAAAAAAAAAAAAAACC‑TTAAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                       <  2:9401191/128‑1 (MQ=255)
                                                                                                     attaaaaaaaaaaaaaaaaaaaATAACC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                       <  1:1114031/122‑1 (MQ=255)
                                                                                                     atacaaaaaTAAAAAAAAAA‑AATACACCTT‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACat                      <  2:7332869/122‑1 (MQ=255)
                                                                                                      ttaaaaaaataaaaaaaaaCAATAACA‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTACCTATTATACCACATTTTATTTTTAAAATAAGATATTGACat                      <  1:8076442/118‑1 (MQ=255)
                                                                                                        taaaaaTAAAAAAAAAAAAAAACAC‑‑TTAAA‑AAAT‑‑AAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataata                  <  1:10113254/125‑1 (MQ=255)
                                                                                                        aaaaaaTAAAAAAAAAAAAATTACATTAAAAATTAAAAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                       <  2:2542726/125‑1 (MQ=255)
                                                                                                         aaaaaaaaaaaaaaaaaaATACAC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataat                   <  2:8220478/126‑1 (MQ=255)
                                                                                                         aaaaaTAAAAAAAAAAAAATCAC‑‑ATTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataat                   <  1:8305050/126‑1 (MQ=255)
                                                                                                          aaaaaaaaaaaaaaaCAATAAACTTT‑‑AA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTACCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataata                  <  2:2842088/127‑1 (MQ=255)
                                                                                                           aaaTAAAAAAAAAACAATCCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAAACAAAAACAAAACTCAATTTATTAAAAAACACAATTATAACAAATTTTATTTTTAAAAAAAAATATTAAAattata                  >  1:9328745/1‑128 (MQ=255)
                                                                                                              aaaaaaaaaaaaaaaaaCCATTT‑AA‑AAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAAC‑ACACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatata              <  1:8196207/127‑1 (MQ=255)
                                                                                                              aaaaaaaaaaaaaATACCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatata              <  2:4094930/127‑1 (MQ=255)
                                                                                                                  aaaaaaaaaaTCCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTa          <  2:5564164/128‑1 (MQ=255)
                                                                                                                            tCCCCTTAAAAA‑TTAAAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTCTTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatatat  <  2:4785893/128‑1 (MQ=255)
                                                                                                                                 |                                                                                                                            
AAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTT‑AATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAATAAAAAAAAAACAATCCCCTTTTAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATAT  >  CP016816/202358‑202607

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑