BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP016816	420,157	2 bp→TT	intergenic (‑440/+402)	JCVSYN2_01895 ← / ← JCVSYN2_01900	30S ribosomal protein S10/tRNA‑Thr

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP016816	420,157	0	A	T	99.3%	12895.7 / NA	4124	intergenic (‑440/+403)	JCVSYN2_01895/JCVSYN2_01900	30S ribosomal protein S10/tRNA‑Thr
Reads supporting (aligned to +/- strand): ref base A (17/11); new base T (2213/1881); total (2230/1894)
Fisher's exact test for biased strand distribution p-value = 5.70e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*	CP016816	420,158	0	A	T	98.7%	12370.7 / ‑2.8	4124	intergenic (‑441/+402)	JCVSYN2_01895/JCVSYN2_01900	30S ribosomal protein S10/tRNA‑Thr
Reads supporting (aligned to +/- strand): ref base A (2/53); new base T (2228/1841); total (2230/1894)
Fisher's exact test for biased strand distribution p-value = 3.79e-16
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 4299 total aligned reads displayed.

TAAATTCATTCATACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTAAAATTAAAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTCG‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTAT  >  CP016816/420035‑420282

||

taaattCATTCATACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATttttaatt                                                                                                                            >  1:1075685/1‑128 (MQ=255)

   attcattcATACTTTTATTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATttttaatttta                                                                                                                         <  2:1515818/128‑4 (MQ=255)

       attcatACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTtaataa                                                                                                                     <  2:730214/128‑1 (MQ=255)

        ttcatACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAAc                                                                                                                    <  1:7912756/128‑1 (MQ=255)

        ttcatACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAAc                                                                                                                    >  1:3033336/1‑128 (MQ=255)

         tcatACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACt                                                                                                                   >  1:10190987/1‑128 (MQ=255)

           atACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGa                                                                                                                 >  2:6392488/1‑128 (MQ=255)

           atACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGa                                                                                                                 <  2:5444251/128‑1 (MQ=255)

           atACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGa                                                                                                                 <  2:2415991/128‑1 (MQ=255)

            tACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGaa                                                                                                                <  1:257496/128‑1 (MQ=255)

             aCTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAat                                                                                                               >  2:479511/1‑128 (MQ=255)

              cTTTTAGTCTCATATATCTATGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAatt                                                                                                              <  1:10373059/128‑1 (MQ=255)

                  tAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTAttt                                                                                                          <  1:7665119/128‑1 (MQ=255)

                   aGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTAtttt                                                                                                         >  1:2278083/1‑128 (MQ=255)

                   aGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTAtttt                                                                                                         <  1:4041906/128‑1 (MQ=255)

                     tctcATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTc                                                                                                       >  2:10078150/1‑128 (MQ=255)

                      ctcATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTATAACTTTTTTAAAAAATTTTTAATTTTAATAAATTAATTATTTTTCa                                                                                                      >  2:1733852/1‑128 (MQ=255)

                       tcATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCaa                                                                                                     >  2:1327094/1‑128 (MQ=255)

                       tcATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCaa                                                                                                     <  2:6189994/128‑1 (MQ=255)

                       tcATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCaa                                                                                                     <  1:8863746/128‑1 (MQ=255)

                         aTAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAAt                                                                                                   <  2:7520889/128‑1 (MQ=255)

                         aTAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAAt                                                                                                   <  2:8520567/128‑1 (MQ=255)

                         aTAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAAT‑ATACTTTTATTAGTTGATATATTAGAAAACTACTAGAACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAAtt                                                                                                  >  1:4477879/1‑128 (MQ=255)

                           aaaTCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTAATAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTg                                                                                                 >  2:3681088/1‑128 (MQ=255)

                            aaTCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGt                                                                                                <  2:2854027/128‑1 (MQ=255)

                            aaTCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGt                                                                                                <  1:7106962/128‑1 (MQ=255)

                             aTCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGtt                                                                                               <  1:6895416/128‑1 (MQ=255)

                             aTCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTATAAAAAATTTTTAATTATAATAACTGAATTATATTTCAAATTGtt                                                                                               >  2:5847207/1‑128 (MQ=255)

                                 aaGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAat                                                                                           <  1:1966284/128‑1 (MQ=255)

                                   gTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAatta                                                                                         <  2:1123203/128‑1 (MQ=255)

                                     ttCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAattatt                                                                                       >  1:1227572/1‑128 (MQ=255)

                                     ttCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAattatt                                                                                       >  1:6681647/1‑128 (MQ=255)

                                     ttCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTATCAAATTGTTAAattatt                                                                                       >  2:3506427/1‑128 (MQ=255)

                                      tCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTAttt                                                                                      >  2:8888852/1‑128 (MQ=255)

                                       cTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCCCTTTTTTAAAAAATTTTTAATTTTAATAAATGAAATATTTTTCAAAATTTTAAATTAttta                                                                                     >  2:2559735/1‑127 (MQ=255)

                                       cTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTTTTAAATTAtttt                                                                                     >  1:5717353/1‑128 (MQ=255)

                                        tAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTc                                                                                    <  2:7870720/128‑1 (MQ=255)

                                          aaaTTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCaa                                                                                  <  1:9376231/128‑1 (MQ=255)

                                           aaTTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCaaa                                                                                 <  2:8156881/128‑1 (MQ=255)

                                                 tttATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGAACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTa                                                                           <  1:3193918/128‑1 (MQ=255)

                                                  ttATCATTTATAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTAt                                                                          <  2:10226607/128‑1 (MQ=255)

                                                   tATCATTTAAAAAAATAATACTCTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATc                                                                         <  1:9852110/128‑1 (MQ=255)

                                                    aTCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCt                                                                        <  1:1718338/128‑1 (MQ=255)

                                                     tCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTa                                                                       >  2:4618371/1‑128 (MQ=255)

                                                     tCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTa                                                                       <  2:4083727/128‑1 (MQ=255)

                                                       aTTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTACAAATTGTTAAATTATTTTCAAATCATTATCTAtt                                                                     >  1:9219163/1‑128 (MQ=255)

                                                           aaaaaaaTAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATc                                                                 >  2:10423065/1‑128 (MQ=255)

                                                            aaaaaaTAATACTTTTATTAGTTGATATATTAGAAAAATACTAGCACTTTTATAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCa                                                                <  1:8545027/128‑1 (MQ=255)

                                                                aataatACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAAttt                                                            <  2:6763967/128‑1 (MQ=255)

                                                                aataatACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAAttt                                                            <  1:5519020/128‑1 (MQ=255)

                                                                aataatACTATTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAAttt                                                            <  2:9818037/128‑1 (MQ=255)

                                                                    aaaattttATTAGTTGATATAATAGAAAACTACTAGCAATTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATg                                                        <  1:5307137/124‑1 (MQ=255)

                                                                     taCTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGc                                                       >  2:2266402/1‑128 (MQ=255)

                                                                       cTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAatta                                                                                         <  1:8737693/92‑1 (MQ=255)

                                                                        ttttATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTCg                                                    >  2:2089223/1‑128 (MQ=255)

                                                                        ttttATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTCg                                                    >  2:692835/1‑128 (MQ=255)

                                                                        ttttATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGATct                                                    >  1:9562453/1‑127 (MQ=255)

                                                                          ttattaTTTGTTATATTACAAAAATAATATCATTTTTTTAAAAAATTTTTATTTTTAAAAAAATTATTATTTTTCAAATTTTTAAATTATTTTCAAATAATTATCTATTAATCAA‑TTTATGCTCG‑ttt                                                <  1:4744661/128‑1 (MQ=255)

                                                                           tattaGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATc                                                                 >  2:8337778/1‑112 (MQ=255)

                                                                            attaGTTTTTAACTTAGTAAACTAATATAACTTTTTTAAAAAATTTTTAATTTTAATAAATTAATTATTTTTTAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTCG‑tttt                                               <  2:9221609/128‑1 (MQ=255)

                                                                            attaGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATg                                                        <  2:7112748/120‑1 (MQ=255)

                                                                              taGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATTCTCG‑tttttt                                             >  2:9535366/1‑128 (MQ=255)

                                                                                tttGATATATTATAAAAATACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAAATTAATTTTTTTTAAAATTTTTAAATTATTTTCAAATCATTATATATTAATCAATTTTATGCTCG‑tttttttt                                           <  1:8222236/127‑1 (MQ=255)

                                                                                 ttGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTCG‑ttttttttt                                          >  2:8722573/1‑128 (MQ=255)

                                                                                   gATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTTAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATATATTAATCAATTTTATTCTCG‑ttttttttttt                                        >  2:7708832/1‑128 (MQ=255)

                                                                                    atatatTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTAG‑tttttttttttt                                       >  1:10002761/1‑128 (MQ=255)

                                                                                      ttattatAAAACTAATATCACTTTTTTAAAAAATTTTTAATTTTAATTACTGAATTATTTTTAAAATTGTTAAATTATTTTCAAATCATTATGTTTTAATCAATTTTATGCTCG‑tttttttttttttt                                     <  1:3794900/127‑1 (MQ=255)

                                                                                      atatTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTCG‑tttttttttttttt                                     >  1:9057152/1‑128 (MQ=255)

                                                                                      atatTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTCG‑tttttttttttttt                                     >  2:6025900/1‑128 (MQ=255)

                                                                                      atatTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTCG‑tttttttttttttt                                     >  2:938141/1‑128 (MQ=255)

                                                                                           aGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTCG‑tattttttttttttttaca                                >  2:6564499/1‑125 (MQ=255)

                                                                                             taaaaaactaGTACTTTTTTAAAAAATTTTTAATTTTAAAAACTTAATTTTTTTTCAAATTTTTAAATTATTTACAAATCATTATATATTAATCAATTTTTTGCTCG‑TTTTTTTTTTTTTTTTT‑ACaa                             <  1:970500/122‑1 (MQ=255)

                                                                                             aaaaCAAATATCAATTTTTAAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTTTTAAATTATTTTCAAAACATAATCTAATAATCAAATTTATGCCCG‑GTTTTTTTTTTTTTTTT‑ACaa                             <  2:491966/128‑1 (MQ=255)

                                                                                              aaaCTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTCG‑TTTTTTTTTTTTTTTTa‑aaaaa                            >  1:3605153/1‑128 (MQ=255)

                                                                                                 ctactaGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTCG‑TTTTTTTTTTTTTTTTa‑aaaaaaaa                         >  2:4236330/1‑127 (MQ=255)

                                                                                                  tactaGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTCG‑TTTTTTTTTTTTTTTTT‑AAAAAAata                        >  1:4242175/1‑128 (MQ=255)

                                                                                                  taatataaattttttAAAAAATTTTTAATTTTAATAAATTTATTTTTTTTTAAATTTTTAAATTTTTTTAAAATAATTATATATTAATAAATTTTTTTTTTT‑TTTTTTTTTTTTTTTTT‑ACAAAAata                        <  1:6256283/119‑1 (MQ=255)

                                                                                                     tttttattttttTAAAAATTTTTAATTTTAATAAATTAATTTTTTTTAAAATTTTTAAATTATTTTAAAATAATTATATATTAATAAATTTTATTTTCG‑‑TTTTTTTTTTTTTTTT‑ACAAAAATATAat                    <  1:2766864/122‑1 (MQ=255)

                                                                                                     taGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTCG‑TTTTTTTTTTTTTTTTA‑AAAAAAATATaa                     >  2:2710136/1‑128 (MQ=255)

                                                                                                     taGCACTATTTATAAAAATTTTTAATATTAAAAACAGAAATTATTTTCAAATTTTTAAATTATTTTAAAATAATTATCTATTAATCAAATTTATGCTCG‑TTTTTTTTTTTTTTTTT‑ACAAAAATATaa                     <  1:7303628/128‑1 (MQ=255)

                                                                                                     attcaattttttTAAAAATTTTTATTTTTAATAAATTTATTTATTTTAATATTTTTTAATTATTTTAAAATCATTATATATTAATAAATTTTATGCT‑T‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAat                    <  2:3013736/122‑1 (MQ=255)

                                                                                                      aGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATAATTATCTATTAATCAATTTTATGCTCG‑TTTTTTTTTTTTTTTTT‑AAAAAAATTTAat                    >  1:3377779/1‑128 (MQ=255)

                                                                                                       gCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTCG‑TTTTTTTTTTTTTTTTTAACAAAAATATAat                    >  2:5158074/1‑128 (MQ=255)

                                                                                                       gCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTCG‑TTTTTTTTTTTTTTTTT‑ACAAAAAAATAatt                   >  2:311931/1‑128 (MQ=255)

                                                                                                        cACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTCT‑TTTTTTTTTTTTTTTTT‑Aaaaaaaaaataaat                  >  2:1880570/1‑120 (MQ=255)

                                                                                                        cACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTCG‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAaatt                  >  2:9647110/1‑128 (MQ=255)

                                                                                                        cACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTCG‑TTTTTTTTTTTTTTTTT‑AAAAAAAAAAAatta                  >  2:80186/1‑127 (MQ=255)

                                                                                                         aCTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTCG‑TTTTTTTTTTTTTTTTT‑AAAAAAATATAattta                 >  2:3315008/1‑128 (MQ=255)

                                                                                                         aCTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTCG‑TTTTTTTTTTTTTTTTT‑AAAAAAATAAAattta                 >  1:13826/1‑128 (MQ=255)

                                                                                                         aCTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTCG‑TTTTTTTTTTTTTTTTA‑ACAAAAAAATAatttt                 >  1:8408033/1‑127 (MQ=255)

                                                                                                           ttttttAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTCG‑TTTTTTTTTTTTTTTTT‑ACAAAAATAAAatttttt               >  1:2454419/1‑128 (MQ=255)

                                                                                                           ttttttAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTCG‑TTTTTTTTTTTTTTTTT‑AAAAAAATATAatttatt               >  2:3906324/1‑128 (MQ=255)

                                                                                                           ttttttAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTCG‑‑‑‑‑TTTTTTTTTTTTT‑ACAAAAATATAATTTATTTAAt           >  2:5628183/1‑128 (MQ=255)

                                                                                                            tttttAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTCGTTTTTTTTTTTTTTTTTT‑ACAAAAATATAatttatt               >  2:530260/1‑128 (MQ=255)

                                                                                                            tttttAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTCG‑TTTTTTTTTTTTTTTTT‑AAAAAAATATAaattattt              >  2:4414835/1‑128 (MQ=255)

                                                                                                                   aaaaTTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTCG‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAATTAATTTAATaaaa       >  2:9068216/1‑128 (MQ=255)

                                                                                                                    aaaTTTTTAATTTTAATAAATTTATTATTTTTAAAATTTTTAAATTATTTTAAAATAATTTTATATTAATAAATTTTATTCTTG‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAAc      <  1:5963727/128‑1 (MQ=255)

                                                                                                                    aaaTTTTTAATTTTAATAAATGAATTATTTTTAAAATTTTTAAATTATTTTCAAATAATTATCTATTAATTAATTTTATGCT‑‑‑TGTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGt    <  1:646472/128‑1 (MQ=255)

                                                                                                                     aaTTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCa                                                                                   >  1:501553/1‑52 (MQ=255)

                                                                                                                       tttATAATTTTAATAAATGAATTATTTTTAAAATTTTTAAATTATTTTAAAATCATTATATATTAATAAAATTTATGCTCG‑‑TTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACAtaa  <  1:8025441/128‑2 (MQ=255)

||

TAAATTCATTCATACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTAAAATTAAAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTCG‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTAT  >  CP016816/420035‑420282

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`