Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP01681676,8780GT33.8% 2360.1 / 283.2 1335intergenic (‑127/+58)JCVSYN2_00300/JCVSYN2_00305UTP‑‑glucose‑1‑phosphate uridylyltransferase/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base G (708/136);  new base T (12/419);  total (724/611)
Fisher's exact test for biased strand distribution p-value = 0.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 1355 total aligned reads displayed.

TAATATCTCCTTAAAAATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAA‑GATA‑AATTTTTTAAAGAAAAAT‑A‑TT‑AC‑AAC‑‑TTTTTTTTTTT‑TTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTA  >  CP016816/76751‑77006
                                                                                                                                 |                                                                                                                                       
taataTCTCCTTAAAAATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAA‑GATA‑AATTTTTTAAAg                                                                                                                                         >  2:492940/1‑128 (MQ=255)
taataTCTCCTTAAAAATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAA‑GATA‑AATTTTTTAAAg                                                                                                                                         <  2:368597/128‑1 (MQ=255)
taataTCTCCTTAAAAATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAA‑GATA‑AATTTTTTAAAg                                                                                                                                         >  2:761669/1‑128 (MQ=255)
taataTCTCCTTAAAAATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTAAAAAAAAAATTACACTTTAAATTCAAATAAAATTATATAAA‑TATA‑AATTATTTAAAg                                                                                                                                         >  2:1107532/1‑128 (MQ=255)
 aataTCTCCTTAAAAATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAA‑GATA‑AATTTTTTAAAGa                                                                                                                                        >  2:1153704/1‑128 (MQ=255)
     tctcCTTAAAAATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAA‑TATA‑AATTTTTTAAAGaataa                                                                                                                                    >  1:2076076/1‑128 (MQ=255)
     tctcCTTAAAAATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAA‑GATA‑AATTTTTTAAAGaaaaa                                                                                                                                    <  2:2101070/128‑1 (MQ=255)
      ctcCTTAAAAATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAA‑GATA‑AATTTTTTAAAGAAAAat                                                                                                                                   >  1:2413048/1‑128 (MQ=255)
      ctcCTTAAAAATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAA‑GATA‑AATTTTTTAAAGAAAAat                                                                                                                                   <  2:286177/128‑1 (MQ=255)
      ctcCTTAAAAATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCACTTTAAATTCAAATAACATTATATAAA‑GATA‑AATTTTTTAAAGAAAAat                                                                                                                                   >  2:2276143/1‑128 (MQ=255)
       tcCTTAAAAATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAA‑GATA‑AATTTTTTAAAGAAAAat‑a                                                                                                                                 >  1:2729974/1‑128 (MQ=255)
       tcCTTAAAAATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAA‑GATA‑AATTTTTTAAAGAAAAat‑a                                                                                                                                 <  2:267939/128‑1 (MQ=255)
       tcCTTAAAAATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACAGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAA‑GATA‑AATTTTTTAAAGAAAAat‑a                                                                                                                                 <  1:2855528/128‑1 (MQ=255)
           tAAAAATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAA‑GATA‑AATTTTTTAAAGAAAAAT‑A‑TT‑Ac                                                                                                                           >  1:1959367/1‑128 (MQ=255)
           tAAAAATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAA‑GATA‑AATTATTTAAAGAAAAAT‑A‑TT‑Ac                                                                                                                           >  1:2910454/1‑128 (MQ=255)
             aaaaTTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAA‑GATA‑AATTTTTTAAAGAAAAAT‑A‑TT‑AC‑aa                                                                                                                        >  1:37760/1‑128 (MQ=255)
              aaaTTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAA‑GATA‑AATTTTTTAAAGAAAAAT‑A‑TT‑AC‑AAc                                                                                                                       >  1:1045210/1‑128 (MQ=255)
               aaTTTATATTATTTAGTTTACTAAATGATGTAAAATACAAAATAATAAAAACAGTAAAACCCAAATTACCCTTTAAATTAAAATAAAATTAAATAAA‑GATA‑AATTTTTTAAAGAAAAAT‑A‑TT‑AC‑aaat                                                                                                                      <  1:3158348/128‑3 (MQ=255)
               aaTTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAA‑GATA‑AATTTTTTAAAGAAAAAT‑A‑TT‑AC‑AAC‑‑t                                                                                                                    >  2:1446323/1‑128 (MQ=255)
                 tttATATATATTAGTTAAATTAAGGATTTATAATACAAATTAATAAAAACTGTACAACCCAAAATCCCCTTTAAATTCAAATAACATTATATAAA‑TATA‑AATTTTTTAAAGAAAAAT‑A‑TT‑AC‑AAA‑‑ttt                                                                                                                  <  1:2631644/128‑1 (MQ=255)
                  ttATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAA‑GATA‑AATTTTTTAAAGAAAAAT‑A‑TT‑AC‑AAC‑‑tttt                                                                                                                 >  2:1756590/1‑128 (MQ=255)
                     tatatatTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAA‑GATA‑AATTTTTTAAAGAAAAAT‑A‑TT‑AC‑AAC‑‑ttttttt                                                                                                              >  2:1687029/1‑128 (MQ=255)
                       tatatTAGTTAACTTAATTATTTTAAATAAAAATTAAAAATAACTGTACAACCCAAATTCCCATTTAAATTCAAATAAAATTATATAAA‑TATA‑AATTTTTTAAAGAAAAAT‑A‑TT‑AC‑AAC‑‑ttttttttt                                                                                                            <  2:2978771/128‑1 (MQ=255)
                       tatatTAGTTAAATTAATTATTTAAAAAACAAATTAATAATAACTGTACAACCAAAATTCCCCTTTAAATTAAAAAAACATTATAAAAA‑GATA‑AAATTTTTAAATAAAAAT‑A‑TT‑AA‑AAA‑‑ttttttttt                                                                                                            <  1:330755/128‑1 (MQ=255)
                        atatTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAA‑GATA‑AATTTTTTAAAGAAAAAT‑A‑TT‑AC‑AAC‑‑tttttttttt                                                                                                           >  1:2509363/1‑128 (MQ=255)
                                taaataaatgATTTAAAATAAAAATAAATAAAAAAAGTAAAAACAAAATTCCCCTTTAAATTAAAAAAAAATTATAAAAA‑TATA‑AATTTTTTAAATAAAAAA‑A‑TT‑AA‑AAC‑‑ttttttttttt‑ttttttt                                                                                                  <  1:1339663/119‑3 (MQ=255)
                                gAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAA‑GATA‑AATTTTTTAAAGAAAAAT‑A‑TT‑AC‑AAC‑‑ttttttttttt‑tttttta                                                                                                  >  2:2536293/1‑126 (MQ=255)
                                     taattttttataATACAAATTAATAATAACTTTAAAAAACAAATTACCCTTTTAAATAAAAAAACATTATATAAA‑TTTA‑AAATTTTTAAATAAAAAT‑T‑TT‑AC‑AAC‑‑TTTTTTTTTTT‑TTTTTGGAACTa                                                                                             <  1:85971/120‑1 (MQ=255)
                                      aaGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAA‑GATA‑AATTATTTAAAGAAAAAT‑A‑TT‑AC‑AAC‑‑TTTTTTTTTTT‑TTTTTGAAAATaa                                                                                            >  2:2351308/1‑128 (MQ=255)
                                           tttttaataaAAATTAATAATAAATTTACAAACCAAATTACCCTTTAAATTAAAATAAAATTATATAAA‑TATA‑AATTTTTTAAATAAAAAT‑A‑TT‑AA‑AAC‑‑TTTTTTTTTTT‑TTTTTGGAACTAACatat                                                                                       <  1:443907/124‑1 (MQ=255)
                                            gTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAA‑GATA‑AATTTTTTAAAGAAAAAT‑A‑TT‑AC‑AAC‑‑‑TTTTTATTTT‑TTTTTGCAAATAACATATaa                                                                                     >  1:1497105/1‑128 (MQ=255)
                                             tataATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAA‑GATA‑AATTTTTTAAAGAAAAAT‑A‑TT‑AC‑AAC‑‑TTTTTTTTTTT‑TTTTTTTAAAAAAAATATaa                                                                                     >  2:1549299/1‑128 (MQ=255)
                                             tataATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAA‑GATA‑AATTTTTTAAAGAAAAAT‑A‑TT‑AC‑AAC‑‑TTTTTTTTTTT‑TTTTTTGAAAAAAAAtatat                                                                                     >  2:549300/1‑127 (MQ=255)
                                              attataAAAATTAATAATAACTTTAAAAACCAAATTACCCTTTTAATTAAAATAAAATTATATAAA‑TATA‑AATTTTTTAAATAAAAAT‑A‑TT‑AA‑AAA‑‑TTTTTTTTTTT‑TTTTTGGAAATAACATATAAt                                                                                    <  1:1537564/125‑1 (MQ=255)
                                              ataataAAAATTATTATTTATTTTACAATTTTATTTCCCCTTTAAAATAAAATAACAATATATAAA‑TATA‑AATTTTTTAAATAAAAAT‑A‑TT‑AC‑AAA‑‑TTTTTTTTTTT‑TTTTTGGAACTAACATATAAt                                                                                    <  1:2022040/128‑1 (MQ=255)
                                              aaaataAAAAATAATAAAAACTGTACAACCCAAATTACCCTTTAAATTAAAAAAAAATTATATAAA‑TATA‑AATTTTTTAAATAAAAAT‑A‑TT‑AA‑AAA‑‑TTTTTTTTTTT‑TTTTTGGAACTAACATATAAt                                                                                    <  1:230036/126‑1 (MQ=255)
                                               taataaAAATTAATAATAAATTTTAAAACCAAATTCCCCTTTAAAATAAAATAAAATTATATAAA‑CATA‑AATTTTTTAAATAAAAAA‑A‑TT‑AC‑AAA‑‑TTTTTTTTTTT‑TTTTTGGAACTAACATATAAtt                                                                                   <  1:477282/128‑1 (MQ=255)
                                                         taataataaATTTTAAAACAAAATTTCACTTTAAATTTAAATAATATTTTTTTAA‑TTTA‑AATTTTTTAAATTAAAAT‑A‑TT‑‑T‑AAA‑‑ATTTTTTTTTT‑TTTTTGGAACTAACATATAATTTTACCAattat                                                                        <  1:1000935/128‑1 (MQ=255)
                                                            taataaCTTTAACAACCAAATTCACCTTTAAATTAAAATAACATTATAAAAA‑GATT‑AATTTTTTAAATTAAAAT‑A‑TT‑AA‑AAC‑‑TTTTTTTTTTT‑TTTTTGGAACTAACATATAATTTTACCAAttatta                                                                      <  1:3115179/128‑1 (MQ=255)
                                                            taataaCTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAA‑GATA‑AATTTTTTAAAGAAAAAT‑A‑TT‑AC‑AAC‑‑TTTTTTTTTTT‑TTTTTGTAAATAAAATATAATTTAACAAtttataa                                                                      >  2:3155255/1‑126 (MQ=255)
                                                            taataaCTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAA‑GATA‑AATTTTTTAAAGAAAAAT‑A‑TT‑AC‑AAC‑‑TTTTTTTTTTT‑TTTTT‑GAACTTAAATATAAATTTAAAAAttattaa                                                                     >  2:189169/1‑127 (MQ=255)
                                                            aacttaCTGTACAAACCAAAATTCCCTATAAAATAAAAAAAAAATATAAAAA‑TATA‑AATTTTTTAAATAAAAAT‑T‑TT‑AA‑AAA‑‑TTTTTTTTTTT‑TTTTTGGAACTAACATATAATTTTACCAAttatta                                                                      <  1:113138/123‑1 (MQ=255)
                                                            aaataaCTTTAAAACCCAAATTACCCTTTAAATTAAAAAAAAATTATAAAAA‑TATA‑AATTTTTTAAATAAAAAT‑T‑TT‑AC‑AAA‑‑TTTTTTTTTTT‑TTTTTGGAACTAACATATAATTTTACCAAttatta                                                                      <  1:2659972/127‑1 (MQ=255)
                                                            aaaaaaatttaaaaCCAAAAATTCCATTTTAATTAAAATAAAATTATATAAA‑AATA‑AATTTTTTAAATAAAAAT‑T‑TT‑AA‑AAA‑‑TTTTTTTTTTT‑TTTTTGGAACTAACATATAATTTTACCAAttatta                                                                      <  1:159540/116‑1 (MQ=255)
                                                               taaCTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAA‑GATA‑AATTTTTTAAAGAAAAAT‑A‑TT‑AC‑AAC‑‑TTTTTTTTTTT‑TTTTTGAAAATAACATATAATTTTCCCAATTATTAGaa                                                                   >  1:603309/1‑128 (MQ=255)
                                                                 aCTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAA‑GATA‑AATTTTTTAAAGAAAAAT‑A‑TT‑AC‑AAC‑‑TTTTTTTTTTT‑TTTTT‑TAAATAAAATATAATTTTAACAATTATAATaattt                                                                >  2:1397296/1‑128 (MQ=255)
                                                                  cTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAA‑GATA‑AATTTTTTAAAGAAAAAT‑A‑TT‑AC‑AAC‑‑TTTTTTTTTTTATATTTGGAACAAACATATAATTTTACCAAATTTTACaatt                                                                 >  2:682199/1‑128 (MQ=255)
                                                                  cTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAA‑GATA‑AATTTTTTAAAGAAAAAT‑A‑TT‑AC‑AAC‑‑TTTTTTTTTTT‑TTTTTGGAACTAACATATAAATTTACCAATTATTAGaattt                                                                >  1:1892763/1‑128 (MQ=255)
                                                                       aaaCCCAAATTAACCTTTAAATTAAAATATAATTATATAAA‑TATA‑AATTTTTTAAATAAAAATAA‑TA‑AA‑AAT‑‑TTTTTTTTTTT‑TTTTTGGAACTAACATATAATTTTACCAATTATTAGaatttcaat                                                            <  1:1772348/127‑1 (MQ=255)
                                                                        aaaccAAATTACCATTTAAATTAAAATAAAATTTTATAAA‑TAAA‑AATTTTTTAAATAAAAAT‑A‑TT‑AC‑AAA‑‑TTTTTTTTTTT‑TTTTTGGAACTAACATATAATTTTACCAATTATTAGaatttcaattt                                                          <  2:1055471/125‑1 (MQ=255)
                                                                        aaCCCAAATTCCCCTTTAAATTCAAATAACATTATATAAA‑GATA‑AATTTTTTAAAGAAAAAT‑A‑TT‑AC‑AAC‑‑‑TTTTTTTTTT‑TTTTTGATACTAACTTAAAATTTTACAAAATTTTACtatttaaaatta                                                         >  1:760444/1‑127 (MQ=255)
                                                                        aaCCCAAATTACACTTTAAATTAAAATAAAATTATAAAAA‑TATA‑AATTTTTTAAATAAAAAT‑A‑TT‑AA‑AAC‑‑‑TTTTTTTTTT‑TTTTTGGAACTAACATATAATTTTACCAATTATTAGaatttcaatttc                                                         <  1:2584408/128‑1 (MQ=255)
                                                                         aacacaaTTACCCTTTAAATTCAAATAAAAATATATAAA‑TATA‑AATTTTTTAAATTAAAAT‑A‑TT‑AA‑AAC‑‑‑TTTTTTTTTT‑TTTTTGGAACTAACATATAATTTTACCAATTATTAGAatttcaatttca                                                        <  1:1641134/123‑1 (MQ=255)
                                                                         aCCCAAATTCCCCTTTAAATTCAAATAACATTATATAAA‑GATA‑AATTTTTTAAAGAAAAAT‑A‑TT‑AC‑AAC‑‑TTTTTTTTTTT‑TTTTTGGAACTAACATATAATTTTACCAATATTTAGaatttaaatttc                                                         >  2:3127743/1‑128 (MQ=255)
                                                                          cccAAATTCCCCTTTAAATTCAAATAACATTATATAAA‑GATA‑AATTTTTTAAAGAAAAAT‑A‑TT‑AC‑CACT‑TTTTTTTTTTT‑TTTTTGGAACAAAAATAAAATTTTACCAATTATTAGaatttaaatttc                                                         >  2:2447682/1‑128 (MQ=255)
                                                                          ataaatattgacTTTAAAATAAAATAATTTTATATAAA‑GATA‑ATTTTTTTAATTAAAAAT‑A‑TT‑AA‑AAC‑‑‑TTTTTTTTTT‑TTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTcac                                                       <  2:2185984/117‑1 (MQ=255)
                                                                            cAAATTACCCTTTAAATTCAAATAAAATTATATAAA‑TTTA‑AATTTTTTAAAGAAAAAT‑A‑TT‑AA‑AAA‑‑TTTTTTTTTTT‑TTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTcaca                                                      <  1:3009377/128‑1 (MQ=255)
                                                                             aatttCCCTTTTAATTTAAAATAA‑ATTATTTAAA‑TATA‑AATTTTTTAAAAAAAAAT‑‑‑TT‑TT‑AAA‑‑ATTTTTTTTTT‑TTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGAt                                                   <  2:2413048/125‑1 (MQ=255)
                                                                              aattaaaatttaaatttaaaTTAAATTATATAAT‑TATA‑AATTTTTTAAATAAAAAT‑A‑TT‑AC‑AAA‑‑TTTTTTTTTTT‑TTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGa                                                    <  2:1251286/120‑1 (MQ=255)
                                                                              aaTTCCCCTTTAAATTCAAATAACATTATATAAA‑GATA‑AATTTTTTAAAGAAAAAT‑A‑TT‑AC‑AAC‑‑TTTTTTTTTTT‑TATTT‑TAAATAAAATATAATTAAAAAAAATATAAAAATTACAATTTaacaaaa                                                   >  1:1188135/1‑125 (MQ=255)
                                                                               aTTCCCATTTAAATTAAAATAACATTATATAAA‑TATA‑AATTTTTTAAATAAAAAA‑A‑TT‑AC‑AAA‑‑TTTTTTTTTTT‑TTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGAt                                                   <  1:2461773/128‑1 (MQ=255)
                                                                                ttCCCCTTTAAATTCAAATAACATTATATAAA‑GATA‑AATTTTTTAAAGAAAAAT‑A‑TT‑AC‑AACT‑TTTTTTTTTTT‑TTTTTGGAACTAACATATAATTTTACAAATTATTATaatttcaatttaaaaaat                                                   >  2:436179/1‑121 (MQ=255)
                                                                                  attcTTTAAATTAATATAAAATTTTATTAA‑TATT‑AATTTTTTTAATAAAAAT‑A‑TT‑ACAAAT‑‑TTTTTTTTTTT‑TTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGa                                                 <  2:10091/125‑1 (MQ=255)
                                                                                     cTTTAAATTCAAATAACATTATATAAA‑GATA‑AATTTTTTAAAGAAAAAT‑A‑TT‑AC‑AAC‑‑TTTTTTTTTTT‑TTTTTGGAAATAACATATAATTTTACCAATTATATTAATATAAATTTAACAGATTAATTg                                             >  1:1689210/1‑128 (MQ=255)
                                                                                     aattaaaattaaaaAAAATTTTATAAATTATA‑ATTTTTTTAAATAAAATT‑T‑TT‑A‑‑AAA‑‑ATTTTTTTTTT‑TTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTg                                             <  1:529691/126‑1 (MQ=255)
                                                                                       ttaaatttaaatTAAATTTTATAAA‑TTTA‑AATTTTTTTAATTAAAAT‑T‑TT‑TA‑AAA‑‑TTTTTTTTTTT‑TTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGAt                                           <  1:800290/128‑1 (MQ=255)
                                                                                        tAATTTCAAATTACATTTAATTAA‑GATA‑AATTTTTTAAATATATAT‑A‑AT‑AA‑AAA‑‑TTTTTTTTTTT‑TTTTT‑GAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGAttt                                         <  2:249960/128‑1 (MQ=255)
                                                                                        tAAATTCAAATAACATTATATAAA‑GATA‑AATTTTTTAAAGAAAAAT‑A‑TT‑AC‑AAC‑‑TTTTTTTTTTT‑TTTTTGGAACTAACATATAATTTTACCAATTATTATAATTTCAATTTCACAGATGAATTGAtt                                          >  2:1926828/1‑128 (MQ=255)
                                                                                         taaTTTAAATTAAATTATATAAA‑TATT‑AATTTTTTAAATAAAAAT‑A‑TT‑TC‑AA‑‑‑ATTTTTTTTTT‑TTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATttc                                        <  1:2370506/127‑1 (MQ=255)
                                                                                         taaTTAAAATAAAATATTATAAA‑TATT‑AATTTTTTAAATATAAAT‑A‑TT‑A‑‑AAA‑‑ATTTTTTTTTT‑TTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATttc                                        <  1:1251027/127‑1 (MQ=255)
                                                                                         aaaTTCAAATAACATTATATAAA‑GATA‑AATTTTTTAAAGAAAAAT‑A‑TT‑AC‑AACTTTTTTTTTTTTT‑TTTTTTGAAATAACATATAATTTTACAAATTATTATAATTTAAATTTAACATATTAATTTAt                                           >  2:81423/1‑128 (MQ=255)
                                                                                         aaaTTAAAATAAAATTTTATAAA‑TATA‑AATTTTTTAAATAAAAAT‑A‑TT‑AC‑AACTTTTTTTTTTTTT‑TTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGAt                                           <  2:918766/128‑1 (MQ=255)
                                                                                          aaTTCAAATAACATTATATAAA‑GATA‑AATTTTTTAAAGAAAAAT‑A‑TT‑AC‑AAC‑‑TTTTTTTTTTT‑TTTTTGTAAATAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGAttta                                        >  2:2588209/1‑127 (MQ=255)
                                                                                           aTTAAAATAAAATTAT‑TAAA‑ATTATAATTTTTTAAATAAAAATAA‑TA‑AA‑AAT‑‑TTTTTTTTTTT‑TTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATttc                                        <  2:3028030/128‑1 (MQ=255)
                                                                                            ataaaaTAACATTATATTAA‑TATA‑ATTTTTTTAAATAAAAAA‑A‑TT‑AA‑AAA‑‑TTTTTTTTTTT‑TTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATttctt                                      <  1:914468/125‑1 (MQ=255)
                                                                                              cAAATAACATTATATAAA‑GATA‑AATTTTTTAAAGAAAAAT‑A‑TT‑AC‑AAC‑‑TTTTTTTTTTT‑TTTTTTTACAAAACATATAATAATAACAATTATTATAATTTCAATTAAAAATATTAatttatttataat                                    >  2:1804947/1‑123 (MQ=255)
                                                                                                aaTAACATTATATAAA‑GATA‑AATTTTTTAAAGAAAAAT‑A‑TT‑AC‑AAC‑‑TTTTTTTTTTT‑TTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCtaa                                  <  2:2629441/128‑1 (MQ=255)
                                                                                                   aaCATTATTTAAA‑GATA‑AATTTTTTAAATTAAAAT‑A‑TT‑AA‑AAC‑‑‑TTTTTTTTTT‑TTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTaataat                              <  2:62960/128‑1 (MQ=255)
                                                                                                   aaCATTATATAAA‑GATA‑AATTTTTTAAAGAAAAAT‑A‑TT‑AC‑AACTTTTTTTTTTTTT‑TTTTTTGAACTAATATATAATTTTACCAATTATTAGAATTTCAATTTAAAAAATTAATTTAATTCTTAtaat                                 >  1:2949000/1‑128 (MQ=255)
                                                                                                   aaCATTATATAAA‑GATA‑AATTTTTTAAAGAAAAAT‑A‑TT‑AC‑AACT‑TTTTTTTTTTT‑TTTTTGGAACTAACATATAATTTTACCAATTTTTAGAATTTAAATTTCACAGATGTATTGAtttatgcgaaaa                                >  2:1589322/1‑119 (MQ=255)
                                                                                                         atataAA‑GATA‑AATTTTTTAAAGAAAAAT‑A‑TT‑AC‑AAC‑‑TTTTTTTTTTT‑TTTTTGTAACTAACATAAATTTTTACCAATTATTTGATTTTCATTTTCAAATATTAAATTATTTTTTCtaaatttttgac                         >  1:711067/1‑119 (MQ=255)
                                                                                                         aaataaa‑tata‑aatTTTTTAAATAAAAAA‑A‑TT‑AA‑AAC‑‑TTTTTTTTTTT‑TTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTc                         <  2:230738/126‑1 (MQ=255)
                                                                                                          tataAA‑GATA‑AATTTTTTAAAGAAAAAT‑A‑TT‑AC‑AAC‑‑TTTTTTTTTTT‑TTTTTGGAACTAAAATATAATTTTACAAATTTTTTTAATTTCAATTTCACAGATCAATATATTTATTCTAATAATTTTTca                        >  1:643562/1‑127 (MQ=255)
                                                                                                           ataaa‑tata‑aatTTTTTAAATTAAAAT‑A‑TT‑‑T‑AAA‑‑ATTTTTTTTTT‑TTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCtat                      <  2:2911785/128‑1 (MQ=255)
                                                                                                              taataTA‑AAATTTATAAAGAACAAT‑A‑TT‑AT‑ACC‑‑TTTTTTTTTTT‑TTTTTGGAACTAACATATAATTTTACCACTTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCtata                     <  2:1514985/124‑1 (MQ=255)
                                                                                                               tttttA‑ATTTTTTTAAATATAAAT‑A‑TT‑AT‑AA‑‑‑TTTTTTTTTTT‑TTTTTGGAAATAAAATATAATTTTACAAATTATTAGAATTTCTATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCtatata                   <  1:2138348/124‑1 (MQ=255)
                                                                                                               aataTA‑AATTTTTTAAATAAAAAT‑A‑TTAAA‑AAT‑‑TTTTTTTTTTT‑TTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCtata                     <  2:1634892/125‑1 (MQ=255)
                                                                                                               aataTA‑AATTTTTTAAATAAAAAT‑A‑TT‑TA‑AAA‑‑ATTTTTTTTTT‑TTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCtatat                    <  2:1975843/125‑1 (MQ=255)
                                                                                                                 gATA‑AATTTTTTAAAGAAAAAT‑A‑TT‑AC‑AAC‑‑‑TTTTTTTTTT‑TTTTTGTAAATAAAATATAATTTTACAAATTATTTTAATTTCATTTTAAAAATAGAATTCATTTATTCAATAAAtttaggaatattta                 >  2:1304134/1‑117 (MQ=255)
                                                                                                                  tattaaTTTTTTAAATAAAATT‑A‑TT‑AC‑‑AT‑‑ATTTTTTTTTT‑TTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGa                 <  1:1397296/124‑1 (MQ=255)
                                                                                                                    a‑aaTTTTTTAATAAAAATA‑A‑TT‑AA‑AAT‑‑TTTTTTTTTTT‑TTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATg               <  2:2744853/128‑1 (MQ=255)
                                                                                                                    a‑aaTTTTTTAAAGAAAAAT‑A‑TT‑AC‑AAC‑‑‑‑TTTTTTTTT‑TTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCAAATATTAATTGATTTCTTATAATAATTTTTCTATATAGAtttt             >  1:2792642/1‑128 (MQ=255)
                                                                                                                      aaTTTTTTAAAGAAAAAT‑A‑TT‑AC‑AAC‑‑TTTTTTTTTTT‑TTTTTGTAACTAAAAAATAATTTTACAAATTATTAAAATTAAAATTTAAAATATTAATTTATTTATTATAATAATTTGTCTatatatattt              >  1:1087178/1‑126 (MQ=255)
                                                                                                                       aatttttAAATAAAAAT‑A‑TT‑TA‑AA‑‑‑‑ATTTTTTTTT‑TTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGtttt           <  1:1799998/126‑1 (MQ=255)
                                                                                                                        ttttttAAAGAAAAAT‑A‑TT‑AC‑AACT‑TTTTTTTTTTT‑TTTTTTTAAATAAAATAATATTTAACCAATTATTATAATTTAAATTTACCAGTTGAAAATAATTATTTTAATAATTTGAATATATAGAtttt             >  1:2197354/1‑128 (MQ=255)
                                                                                                                          ttttAAAGAAAAAT‑A‑TT‑AC‑AAC‑‑TTTTTTTTTTT‑TTTTT‑‑AAAAAAAAAAAAATATTTAAAATATTTATAATATAAAATTATCAAATGATTTAATTTTTACTAATAATTTTTTTAATTATATGttttttt        >  1:1455177/1‑127 (MQ=255)
                                                                                                                           tttAAAGAAAAAT‑A‑TT‑AC‑AAC‑‑‑TTTTTTTTTT‑TTTTTGGAACTAACATATAATTTTACAAATTATTATAATTTCATTTTCAAAGATGAATTTATTTATTATAATAATTTGTATATATATATGTTTTTta        >  2:3204052/1‑128 (MQ=255)
                                                                                                                             tAAAGAATAAT‑C‑AT‑AA‑ATC‑‑TTTTTGTTTTT‑TTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCGATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTtat       <  1:3065508/128‑1 (MQ=255)
                                                                                                                              aaaTAAAAAT‑ATTT‑AA‑AAT‑‑TTTTTTTTTTT‑TTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTtat       <  2:2804575/128‑1 (MQ=255)
                                                                                                                              aaaTAAAAAT‑A‑TT‑TA‑AAC‑‑TTTTTTTTTTT‑TTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTtata      <  2:201937/128‑1 (MQ=255)
                                                                                                                                 |                                                                                                                                       
TAATATCTCCTTAAAAATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAA‑GATA‑AATTTTTTAAAGAAAAAT‑A‑TT‑AC‑AAC‑‑TTTTTTTTTTT‑TTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTA  >  CP016816/76751‑77006

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑