Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816165,2510T.77.2% 698.9 / inf 345intergenic (+215/‑327)JCVSYN2_00665/JCVSYN2_00670tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser
Reads supporting (aligned to +/- strand):  ref base T (27/49);  new base . (173/84);  total (201/144)
Fisher's exact test for biased strand distribution p-value = 1.11e-06
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 447 total aligned reads displayed.

TAATATTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTAAAAGAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCT‑AAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACT  >  CP016816/165124‑165378
                                                                                                                                |                                                                                                                                
taataTTTATTTTCATTAATTTATCTCAATTGTATTAAATATTAATAAAATAAAAATATTATATTTTTATATATTTTTTTTTTA‑TGAAAATTTTTAAAAAATTAATTTTAACTTGTAAAAAATAGCtt                                                                                                                                  <  2:479780/128‑1 (MQ=255)
    aattACTTTTATTAATTTATAGCAATTGTATTAATTAGTAACAAAATAAAAATATTATCTTTTTACATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATATCtttttt                                                                                                                              <  1:2172598/126‑1 (MQ=255)
     ttttGTTTAATTAATTTTTCTCAATTTTTAGAATTATTAATAAAATAAAAATATTATATTTTTAGATATTTTTTTTTTA‑TGCAAATTTTTAAAAAATTAATTTTAAATTTTAAAAAATAGCttttttt                                                                                                                             <  1:739359/128‑1 (MQ=255)
       tattttCATTAATTTATAGCACTTGTATGAATTAGTAAGAAAAAAAAACTATTATCTTTTTAGATATTTTTTTTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCttttttttt                                                                                                                           <  1:1305931/125‑1 (MQ=255)
       tAGTTTCATTAATTTATCGCACATGTATTAATTAGTAAGAAACTAAAACTATTATCTTTTTTGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACATGTAAAAAATAGCttttttttt                                                                                                                           <  2:1782815/128‑1 (MQ=255)
       tAGGTTCATTAATTTATCGCACTTGTATTTATTACTAATAAAATAATAATTATATATTTTTTTATATTTTTTTTAAA‑TTCAAATTTTTAAAAAATTAATTTGCACTTGTAAAAAATACCttttttttt                                                                                                                           <  1:1001110/128‑1 (MQ=255)
          tttCATTAATTTATCCCCATTGTATGAATTAGTAAGAAAATAAAACTATTATTTTTTTATATATTTTTTTTATA‑TGCAAATTTTTAAAAAATTAATTTTAACTTGTAAAAAAAAGCtttttttttttt                                                                                                                        <  1:999778/128‑1 (MQ=255)
              aTTAATTTATAGCACTTGTATGTATTAGTAATAAACTTAAAATATTATCTTTTTAGATATTTTTTGTTTA‑TGCAAATTTTTAAAAAATTAATTTTAAATTGTAAAAAATAGCttttttttttttttta                                                                                                                    <  1:1818518/128‑2 (MQ=255)
               ttAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCtttttttttttttttta                                                                                                                   >  2:1278611/1‑127 (MQ=255)
                tAATTTATTGCACTTGTATGAATTAGTAATAAAATAAAACTTTTATATTTTTATATATTTTTTGTATA‑TTCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCttttttttttttttttta                                                                                                                  <  2:1628809/128‑2 (MQ=255)
                tAATTTATAGCACTTTTATTAATTAGTAATAAACTAAAACTATTATCTTTTTATATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATACCtttttttttttttttata                                                                                                                  <  2:2666331/128‑4 (MQ=255)
                 aaTTTATTGCAATTTTATGAATTATTAATAAAATAAAACTATTATATTTTTATATTTTTTTTTTATA‑TGAAAATTTTTAAAAAATTAATTTGAACTTTTAAAAAATATCttttttttttttttttata                                                                                                                 <  1:1158714/128‑4 (MQ=255)
                   tttAACGCACTTGTATTAATTAGTAACAAAATAAAAATTATATCTTTTTATATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATATCtttttttttttttttataatg                                                                                                               <  1:2112243/128‑7 (MQ=255)
                    ttATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCttttttttttttttttataaat                                                                                                              >  1:505299/1‑122 (MQ=255)
                    ttATAGCACTTTTATGAATTATTAATAAACAAAAAATATTATATTTTTATATATTTTTTTTATA‑TTCAAATTTTTAAAAAATTAATTTTAACTTGTAAAAAATAGCtttttttttttttttataatgg                                                                                                              <  1:1405393/128‑8 (MQ=255)
                        cGCACTTGTATGAATTAGTAAGAAACTAAAAATATTATATTTTTAGATATTTTTTTTATA‑TCCAAATTTTAAAAAAATTAATTTGAAATTTTAAAAAATAGAttattttattatttaataatttaata                                                                                                          >  2:559890/1‑116 (MQ=255)
                            attttattaattattaatAAATTAAAACAATTATTTTTTTTTATTTTTTTTTTTAA‑TTCAAATTTTTAAAAAATTATATTTTACTTGTTTAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATAATGGAAAtata                                                                                                   <  2:1890127/124‑1 (MQ=255)
                            attGTTTTAATTATTTATAAAATAAAAATATTATATTTTTATATTTTTTTTTTATA‑TTTAAATTTTTAAAAAATTAATTTTAAATTTTAAAAAA‑‑‑‑TTTCTTTTTTTTTTTTTTTATAATGGAAATATaa                                                                                                  <  1:3162459/127‑1 (MQ=255)
                               ttttttattattAATAAAATAAAAATATTTTATTTTTATATTTTTTTTTTTTA‑TGCAAATTTTTAAAAAATTAATTTTAAATTGTAAAAAATA‑‑‑‑TCTTTTTTTTTTTTTTTATAATGGAAATATAAAtt                                                                                               <  1:3096884/122‑1 (MQ=255)
                               ttattaattattaatAAACTAAAAATATTTTTTTTTTATATATTTTTTGTATA‑TTCAAATTTTTAAAAAATTAATTTTAACTTTTAAAAATTA‑C‑‑‑ATTTTTTTTTTTTTTTATAATGGAAATATAAAtt                                                                                               <  1:2537638/127‑1 (MQ=255)
                                tttgtaTTAGTAATAAAATAAAAATATTATATTTTTATATATTTTTTTTATA‑TGAAAATTTTTAAAAAATTAATTTTAACTTTTAAAAAATA‑‑‑TCTTTTTTTTTTTTTTTTATAATGGAAATATAAAtt                                                                                               <  2:354612/123‑1 (MQ=255)
                                tttGAATTAGTAATAAAAAAAAAAAATTTTTTTTTTAGTTATTTTTTGTTTA‑TGCAAATTTTTTAAAAATTAATTTGAAATTGTAAAAAATA‑‑‑‑TCTTTTTTTTTTTTTTTATAATGGAAATATAAAttt                                                                                              <  1:1616787/126‑1 (MQ=255)
                                  tttattattAATAAAATAAAAATATTATATTTTTATATATTTTTTTTTAA‑TTGAAATTTTTTAAAAATTATTTTTAAATTTTTAAAAA‑‑‑‑TTGATTTTTTTTTTTTTTTATAATGGAAATATAAATTTTa                                                                                            <  2:2132383/125‑1 (MQ=255)
                                     tatattaataaACTAAAAATATTAATTTTTTATATAATTTTTTTATA‑TGCAAAATTTTAAAAAATTTATTTTCACTTTTTAAAAATA‑‑‑‑TCTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGt                                                                                         <  1:1742133/123‑1 (MQ=255)
                                     attattAATAAACTAAAACATTTATCTTTTTTTATATTTTTTGTATA‑TTCAAATTTTTAAAAAAATAATTTTAACTTGTTAAAAATA‑‑‑‑TCTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGt                                                                                         <  1:419775/128‑1 (MQ=255)
                                      ttattaATAAAATAAAACTATTATTTTTTTTTATATTTTTTTTATA‑TTAAAATTTTTAAAAAATTAATTTTAACTTTTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGt                                                                                         <  2:1973048/128‑1 (MQ=255)
                                      ttACTAATAAATAAAAACTATTATTTTTTTAGATATTTTTTGTATA‑TGTATTTTTTTAAAAATTTAATTTTAAATTTTAAAAA‑‑‑‑‑TTATCCTTTTTTTTTTTTTATAATGGTAATATAAATTTTAGGTAt                                                                                       <  2:773405/128‑1 (MQ=255)
                                       tattaataaAATAAAAATATTTTATTTTTATATATTTTTTTTTTA‑TTCAAATTTTTAAAAAATTAATTTTAAATTTTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTAt                                                                                       <  2:2897156/125‑1 (MQ=255)
                                       tattAACAAAATAAAACTAATATATTTTTATTATTTTTTTGTAAA‑TTCAAATTTTTAAAAAATTAATTTTTAATTGTAAAAAATA‑‑TCTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGt                                                                                         <  1:2364586/125‑1 (MQ=255)
                                        tttaataaAATAAAAATATTAAATTTTTTTTAATTTTTTTTATT‑TGCAAATTTTTAAAAAATTAATTTTCACTTTTTAAAAAAA‑‑‑TCTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTAt                                                                                       <  1:706436/126‑1 (MQ=255)
                                           attaaaaaaaaacttTTATTTTTTTTTATATTTTTTTTATA‑TTCAAATTTTTAAAAAATTAATTTTAACTTTTAAAAAAAACC‑‑‑TTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTAtttt                                                                                    <  2:3052309/120‑1 (MQ=255)
                                           agtatcttaaaattaTT‑TTTTTTTATATATTTTTTGTATT‑TGAAAATTTTTAAAAAATTAATTTGAAATTTTAAAAAATTGC‑‑‑‑TTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTttgt                                                                                  <  1:1682564/121‑1 (MQ=255)
                                             taaaataaaaataTTTTTTTTTTATTTATTTTTTTTATA‑TTAAAATTTTTAAAAAATTAATTTTAACTTTTAAAAAATA‑‑‑TCTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTttgt                                                                                  <  1:2495727/127‑1 (MQ=255)
                                             gAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTTAACTTGTAAAAAATA‑‑‑‑TATTTTTTATTTTTTTTATAATTTAATTTTAAATTTTATTTATtttttt                                                                                 >  1:2239913/1‑128 (MQ=255)
                                              aaactaaaactaTTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTAAAATTAAAATAAAAATTTTATTTAtttttt                                                                                  >  1:551515/1‑126 (MQ=255)
                                               aaattaaaataTTTTCTTTTTTTATATTTTTTTTATT‑TTCAAATTTTTAAAAAAATTATTTTAACTTTTAAAAAATA‑‑‑‑TCTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTtgttgt                                                                               <  2:1404419/123‑1 (MQ=255)
                                               aaataaaattaTTATTTTTTATTATATTTTTTTTTAT‑TTAAAATTTTTAAAAAATTATTTTTAAATTTTAAAAAA‑A‑‑‑TTATTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTtgttgt                                                                               <  1:1212657/125‑1 (MQ=255)
                                                 ataaaaataATTTATTTTTATATATTTTTTTTATA‑TTCAAATTTTTAAAAAAATAATTTGAAATTTTAAAAAATA‑‑‑‑TTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCt                                                                             <  1:3013688/127‑1 (MQ=255)
                                                  aaaaaataTTATATTTTTAAATATTTTTTTTAAATTAAAAATTTTAAAAAATTTAATTTAAAATT‑TAAAAAATA‑‑‑‑TCTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGTTATTTTGTTGTCT‑a                                                                           <  1:660462/127‑1 (MQ=255)
                                                    aaactaTTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAATTTAAATATAAATTTTA‑GTATtttttttgtaa                                                                            >  2:168115/1‑123 (MQ=255)
                                                      attattttGTTTTTTTATATTTTTTTTTAT‑TGCAAATTTTTTAAAAATTATTTTTAACTTGAAAAAAAAAGC‑‑‑‑TTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCT‑AAGTa                                                                       <  1:2050684/126‑1 (MQ=255)
                                                      attattatTTTTTTTTTTTTTTTTTTTATA‑TGAAAATTTTTAAAAAAATAATTTTTAATTTTATAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCT‑AAGtt                                                                       <  1:924287/126‑2 (MQ=255)
                                                       atattttTTTTTTAGATAATTTTTGTATA‑TGGAAATTTTTATAAAATTAATTTTTACTTGTAAAATATAGC‑‑‑‑‑TTTTTTTTTTTTATATAATGGAAATATAAATTTTAGGTATTTTGTTGTCT‑AAGTATc                                                                     <  1:1629535/127‑1 (MQ=255)
                                                        ttttatATTTTTATTTTTTTTTTTTTTA‑AGGAAATTTTTAAAATATTAATTTTAAATTTTTAAAAA‑A‑‑‑TTGTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCT‑AAGTATc                                                                     <  2:1840144/126‑1 (MQ=255)
                                                         attatCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTATAATGTAAATATAATTTTTATTTATTTTTTTTTAT‑aattttat                                                                    >  2:2789110/1‑122 (MQ=255)
                                                          ttatCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑‑‑‑TCTTTTTTTTTTTTATTAAAATTAAAATATAAATTTTATATATTTTTTTTTAT‑aataatata                                                                   >  2:1112100/1‑121 (MQ=255)
                                                           tatCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTATAATGGAAATATAAATTTTATTTATTTTTATGTAT‑aataaacaaa                                                                  >  1:1977739/1‑120 (MQ=255)
                                                             tCTTTTTAGATATTTTTTGTATA‑TTCAAATTTTTAAAAAATTAATTTAAACTTGTAAAAAATAGC‑‑‑‑TTATATTTTTTTTTAATAATGTAAATATAAATTTTATGTATTTTGTTTTCT‑AAGAAACTaaaa                                                                >  2:1575576/1‑128 (MQ=255)
                                                             tCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTATAATTTAAATAAAAATTTAAGTTATTTTTTTTTAT‑AATTTTATaaaa                                                                >  2:1353436/1‑128 (MQ=255)
                                                              cTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑‑TTTTTTTTTTTTTTATAATTTAAATATAAATTTTATTTATTTTTTTTTAT‑AATTATaaaaaaaa                                                              >  2:3096888/1‑128 (MQ=255)
                                                                ttttAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTAAAATGAAAATAAAAATTTAAGTAATTTTTTTGTAT‑AATTAAATaaaaaaa                                                             >  2:2025335/1‑128 (MQ=255)
                                                                 tttAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTATATTGTAAATAAAAATTTATTTTTTTTTGTTTTCT‑AAGTTTATAAAAAAAt                                                            >  1:2016825/1‑128 (MQ=255)
                                                                 tttAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTAGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTAATAATTGAAATATAAATTTTAGATAATTTGTTGTAT‑AAATATATaaaaataa                                                            >  1:1443285/1‑125 (MQ=255)
                                                                   tatttatTTTTTGTTTT‑TTTAAATTTTTAAAAAATTTATTTTAAATTTTAAAAAATA‑‑‑TTTTTTTTTTTTTTTTTTAT‑ATGGAAATATAAATTTTAGGTATTTTGTTGTCT‑AAGTATCTAAAAAAATAg                                                          <  1:184600/124‑1 (MQ=255)
                                                                    attatttttttttttt‑tGCAAATTTTTTAAAAATTTATTTTAAATTTTAAAAAA‑‑‑‑TTTGTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCT‑AAGTATCTAAAAAAATAGa                                                         <  1:1477784/123‑1 (MQ=255)
                                                                      atatTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTATATTGTAAATATAAATTTTAGTTATTTTTTTTTAA‑AATTAAAAAAAAAAATAaaaa                                                       >  1:793662/1‑128 (MQ=255)
                                                                        atTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑‑TTTTTTTTTTTTTTATAAATGAAATATAAATTTTAGTTATTTTGTTTAAT‑AAATAAATAAAAAAATAAAAAgta                                                    >  1:2738407/1‑126 (MQ=255)
                                                                          ttttttTATA‑TTTAAATTTTTTAAAAATTAATTTTTAATTTTAAAAAA‑‑‑‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCT‑AAGTATCTAAAAAAATAGAAAGGaa                                                   <  1:841939/128‑1 (MQ=255)
                                                                           ttttGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTAAAATGGAAATAATAATTTTAGTTATTTTTTTTAAT‑AAGTTTCTAAAAAAATTTAAAGGaaa                                                  >  1:2898817/1‑128 (MQ=255)
                                                                            tttGTATA‑TGTAATTTTTTAAAAATTTAATTTTTAATTTTAAAATATA‑‑‑‑TTTTTTTTTTTTTTTTTATAATGGATATATAAATTTTAGGTATTTTGTTGTCT‑AAGTATCTAAAAAAATAGAAAGGaaaa                                                 <  1:3208055/128‑1 (MQ=255)
                                                                            tttGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTATAATTTAAATATAAATTTTATTTATTTTTTTTTAT‑AATTATATAAAAAAATAAAAATTaaaa                                                 >  2:415079/1‑128 (MQ=255)
                                                                             ttttata‑TTTAAATTTTTAAAAAATTTATTTTAAATTTTAAAAAATA‑‑‑TATTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCT‑AAGTATCTAAAAAAATAGAAAGGaaaa                                                 <  2:2226542/125‑1 (MQ=255)
                                                                             ttGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATTTAAATATAAATTTTAGTTTTTTTTTTTTAT‑AATTATATAAAAAAATATaaattaaa                                                  >  2:2352823/1‑123 (MQ=255)
                                                                              tGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTT‑‑‑‑‑‑TAATGTAAATAAAAATTTTAGTTTTTTTTTTTAAA‑AATAAACTAAAAAAATAAAAAGAaaaaaaaa                                             >  1:1588983/1‑126 (MQ=255)
                                                                              tGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATGGAAATAAAAATTTTAGGAATTTTTTTTTAT‑AATTAAATAAAAAAATAAAAAGAaaaa                                                 >  1:2183565/1‑128 (MQ=255)
                                                                              tGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATGGAAAAAAAAATTTTTGGTATTTTTTTTTAT‑AATTATATAAAAAAATATAAATTaaaa                                                 >  1:1765758/1‑128 (MQ=255)
                                                                                tata‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTATATTGGAAAATTAAATTTTTGGTTTTTTGTTGTAA‑AATTAACTAAAAAAATAGAAATCAAAAAata                                             >  1:2859558/1‑128 (MQ=255)
                                                                                 tta‑tTCAAATTTTTTAAAAATTTATTTTAAATTTTAAAAAATA‑‑TCTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCT‑AAGTATCTAAAAAAATAGAAAGGAAAAAat                                              <  2:678688/127‑1 (MQ=255)
                                                                                  ttttttaaaTTTTTAAAAAATTAATTTTAATTTTTAAAAAATA‑‑‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCT‑AAGTATCTAAAAAAATAGAAAGGAAAAAata                                             <  2:2100440/122‑1 (MQ=255)
                                                                                     tGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTATAATGTAAATATAAATTTTATGTATTTTTTTTTCT‑AATTTAATAAAAAAATATAAATAaaaaaaattttt                                         >  2:644359/1‑122 (MQ=255)
                                                                                      gCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTATAATTTAAATTAAAATTTTAGGTATTTTTTTGTAT‑AATTATATAAAAAATTAGAAAGGAAAAAattatttt                                        >  2:1730597/1‑122 (MQ=255)
                                                                                        aaaTTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATAATGTAAATATAAATTTTAGTTTTTTTTTTTTTA‑AATTATAAAAAAAAATAAAAATAAAAAAATATTTTTa                                       >  1:246735/1‑128 (MQ=255)
                                                                                        aaaTTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTATAATGTAAATAAAAATTTTAGTTATTTTGTTTTAA‑AATTATATAAAAAAATATAAAGTAAAAAATATTTTTaa                                      >  1:2299966/1‑128 (MQ=255)
                                                                                        aaaTTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTATAATGGAAATATAAATTTAAGTTATTTTGTTTTAT‑AATTATCAAAAAAAAAATAATGTAAAAAAAATTATTaa                                      >  1:1186826/1‑128 (MQ=255)
                                                                                              ttaaaaaaTTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTAAAATTGAAATTAAAATTTTAAGTTTTTTTTTTTCA‑AAATAAATAAAAAAAAAAAAAGAAAAAAAAATTTTTAAAAATa                                 >  1:636215/3‑128 (MQ=255)
                                                                                              ttaaaaaaTAAATTTGAACTTGTAAAAAATAGC‑‑‑‑‑TTTTTTTTTTTTATAAAAAGTAAATATAAATTTTAAGAATTAAGTTGAAT‑AAATATCTTAAAAAATATAAAGAAAAAAATAATGATAAAATTaaa                               >  2:2299057/3‑127 (MQ=255)
                                                                                               taaaaaaTTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTAAT‑‑TGTAAATATAATTTTTTGTTTTTTTTTTTTAT‑AAGTAAAAAAAAAAATAAAAATAAAAAAATTTTTTTaaattta                                 >  2:2535949/2‑124 (MQ=255)
                                                                                               taaaaaaTTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTT‑‑TAATGTAAATATAAATTTAATGTTTTTTTTTGTAT‑AATTATCTAAAAAAATATAAAGAAAAAAATATTTTTTAAATTa                                 >  1:889957/2‑128 (MQ=255)
                                                                                                 aaaaattaattTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTATAATTGAAAAAAAAATTTTAGGTATTTTGTTTTCT‑AATTAAATAAAAAAAAATAAATGAAAAAATATTTTTAAAATTaaaaa                             >  1:2965985/4‑125 (MQ=255)
                                                                                                    aattaattTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTAT‑‑TAATGTAAA‑ATAATTTTTAATTATTTTATTTTTT‑AATTTATTTAAAAAATA‑AAATAAAAAAATAATATTaataattataaaaa                          >  1:1390802/1‑116 (MQ=255)
                                                                                                    aattaattTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTT‑‑‑‑TAAAGTAAAAAAAAATTTTATGTATTTTTTTTTATAAAATAAATAAAAAAATAAAAAAAAAAAAATATTTTTaaattaaaaaaaa                           >  1:2591716/1‑118 (MQ=255)
                                                                                                    aattaattTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTAT‑‑‑TAATGTAATTTAAAATTTTAGGTATTTTTTTTATA‑AATTAAAAAAAAAAAAAGAAGAGAAAAAAAATT‑TTAAAAATaaaaaaaa                          >  1:2810712/1‑122 (MQ=255)
                                                                                                    aattaattTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTATTATGTAAATAAAAATTTTTGTTATTTTGTTGTAA‑AATTATAAAAAAAAATAAAAATTAAAAAATTTTGTTAAAATTAAAACaaa                          >  2:2981609/1‑128 (MQ=255)
                                                                                                    aattaattTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTATAATGGAAATTAAAATTTTTGGTATTTTGTTTGAA‑AAGAAAATAAAAAAAAAAAAAGTAAAAAATATTTTTAAAAGTAATaaaaa                          >  1:602414/1‑124 (MQ=255)
                                                                                                     attaattTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATAATGTAATTATAAATTTTTGGTATTTTGTTGTAT‑AAGTATATAAAAAAATATAAAGGAAAAAAATTTTTTAAAAGTAAAAATaa                          >  1:2679863/1‑128 (MQ=255)
                                                                                                     attaattTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTAAAATGAAAATATAAATTTTAGTTATTTTTTTTTAT‑ATTAATATAAAAAATAAAAAAATAAAAAATTTTTTTAATAGtaataataa                          >  2:2437873/1‑128 (MQ=255)
                                                                                                     attaattTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTAAAATGGAAATTTAAATTTTAGGTATTTTTTTGTCT‑AAGTATATAAAAAAAAAAAAATGAAAAAAATTTTTTAAAATTaaaaaaaaa                         >  1:192805/1‑121 (MQ=255)
                                                                                                      ttaattTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTT‑‑‑TAATGTAAAAATAATTTTTAGGTATTTTTTTTTAT‑AATTATATAAAAAAATAGAAAGAAAAAAATATTTTTAAAAGTAATAATaaa                         >  2:1182778/1‑128 (MQ=255)
                                                                                                      ttaattTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTT‑‑‑‑‑TAATTGAAATTTAAATTTTTTGTTATTTTTTTTAT‑AATTTTATTAAAAAATTAAAATGAAAAAATTTTGTTAAAAAGAaaaataaaat                       >  2:2837459/1‑128 (MQ=255)
                                                                                                      ttaattTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTA‑AATGGAAATTTAATTTTAAGGTATTTTTTTTAAT‑ATGTATATAAAAAAATTTAATGGAAAAAATTTTTTTAAAAGTAATATTaaa                         >  2:886141/1‑128 (MQ=255)
                                                                                                      ttaattTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTAAAATTGTAAAAAAAAATTTAAGTTATTATGTTGTAT‑AATTAAAAAAAAAAATAAAAGTAAAAAAAAATTTTAAAAATTAATaaaaaa                         >  1:214243/1‑123 (MQ=255)
                                                                                                        aattTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTT‑‑‑‑‑TAATTGAAATTTAAATTTTAGGTTTTTTTTTTTAT‑AATTATATAAAAAAATATAAATGAAAAAATATTGTTATAAATTATAATAAAatta                     >  2:820463/1‑128 (MQ=255)
                                                                                                           ttGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTATATTGGAAATATAAATTTTATGTATTTTGTTGTAT‑AATTTTATAAAAAAATATAAAGTAAAAAATTTTGTTAAATTAAATAATAAAtttatt                   >  2:970369/1‑128 (MQ=255)
                                                                                                            tGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTA‑AATGGAATTTTAATTTTTTTGTTTTTTTTTGTGT‑ATTTTAATAAAAAAATTAAAAGTAAAAAATTTTTTTAAATTTAATAAAAAAATTAttt                  >  1:1721989/1‑128 (MQ=255)
                                                                                                              aaCTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTATAATGGAAATATAAATTTTTGGTATTTTTTTTTAT‑AATTATATAAAAAAATATAAATTAAAAAATATTTTTAAAATTAATAATAAAATTATTaaa                >  2:1459497/1‑128 (MQ=255)
                                                                                                                cTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTATAATTGAAATAAAAATTTTATTTATTTTTTTTTAT‑ATTTATATAAAAAAATATAATGTAATAAATATTTTTAAAATTAATAATAAAATTATTTTAtt              >  2:1538720/1‑127 (MQ=255)
                                                                                                                 ttGTAAAAAATAGCTTTTTTTTTTTTTTTTT‑‑‑TAATGGAAATATAAATTTTAGTTATTTTGTTGTCT‑AAGTATATAAAAAAATATAAATGAAAAAATATTGTTAAATTTATTACTTAATTGATTTAATg              >  2:1212609/1‑128 (MQ=255)
                                                                                                                    tttttaaaaattttttttttttttttttttATAATGGAAATATAAATTTTAGGTATTTTGTTGTCT‑AAGTATCTAAAAAAATTGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATg              <  1:1248356/117‑1 (MQ=255)
                                                                                                                    tAAAAAATAGCTTTTTTTTTTTTTTTTT‑‑‑TAATGGAAAAAAAAATTTTATGTATTTTGTTGTGA‑AATTAAAAAAAAAAAAAAAAAGGAAAAATATTTTTTAAAAGTTAAACTAAAATTTTTTAAttttt           >  1:2251996/1‑127 (MQ=255)
                                                                                                                    aattttaaaaaatttgttttttttttttttATAATGGAAATATAAATTTTAGGTATTTTGTTGTCT‑AAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATg              <  1:1065882/116‑1 (MQ=255)
                                                                                                                                |                                                                                                                                
TAATATTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTAAAAGAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCT‑AAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACT  >  CP016816/165124‑165378

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑