Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816203,9240GT35.5% 744.9 / 100.7 583intergenic (+308/+150)JCVSYN2_00845/JCVSYN2_00850lipoprotein/inorganic diphosphatase
Reads supporting (aligned to +/- strand):  ref base G (111/240);  new base T (175/18);  total (325/258)
Fisher's exact test for biased strand distribution p-value = 7.29e-44
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 594 total aligned reads displayed.

ATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGC‑‑TTG‑‑‑‑‑TT‑TTTTT‑‑‑TTTT‑‑TTTTTGT‑‑‑‑A‑AAAAT‑AAAAGTAAGA‑TTTGGATCAACCAAAACTA‑TAT‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTT  >  CP016816/203797‑204051
                                                                                                                                                   |                                                                                                                                  
 ttttttATTTAAATCAATTTGTAAAAAAGCCTTTGTTTTTTGCTTTTTTTTATAATTTTAAAAATTAAAACTCTTTTAAATTTTT‑TTTTTTTGGG‑‑TTG‑‑‑‑‑‑T‑TTTTT‑‑‑TTTT‑‑TTTTTGT‑‑‑‑A‑AAAAT‑AAAAGTa                                                                                                                                  <  1:2532808/128‑1 (MQ=255)
          tAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGC‑‑TTGTT‑‑‑TT‑TTTTT‑‑‑TTTT‑‑TTTTTTT‑‑‑‑A‑AAAAT‑AAAATTAATA‑ttt                                                                                                                           >  2:1048572/1‑128 (MQ=255)
            tagacctttGTTAAAAAGCTTATGTTTTAGGTTTTTTATTATACTTTTCAAAATTAAAACGCTTTCAACTTGTT‑TTTTTTTGGC‑‑TTGTT‑‑‑TT‑TTTTT‑‑‑TTTT‑‑TTTTTGT‑‑‑‑A‑AAAAT‑AAAAGTAAGA‑TTTgg                                                                                                                         <  1:3027042/122‑1 (MQ=255)
            aaGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGC‑‑TTG‑‑‑‑‑TT‑TTTTT‑‑‑TTTT‑‑TTTTTTT‑‑‑‑A‑AAAAT‑AAAATTAATA‑TTTTGAt                                                                                                                       >  2:1786663/1‑128 (MQ=255)
            aaGCCATTTGT‑AAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGC‑‑TTG‑‑‑‑‑TT‑TTTTT‑‑‑TTTTTATTTTTGT‑‑‑‑T‑AAAAT‑AAAAAAAAAA‑ttttta                                                                                                                        >  1:2804120/1‑125 (MQ=255)
             aGCCATTTTTAAAAAAGCCTATGTTTTATGCTTTTTATTTTACTTATAAAAATTAAAACGCTTTCAAATTGTT‑TTTTTTATGCTTTTT‑‑‑‑‑TT‑TTTTT‑‑‑TTTT‑‑TTTTTGT‑‑‑‑A‑AAAAT‑AAAAGTAAGA‑TTTGGa                                                                                                                        <  2:2603249/128‑1 (MQ=255)
                cttttGTAAAAAATGATTTTTTTTAGTGTTTTTTTTATAATTAACAAAATTAAAAGGTTTTCAAATTGTA‑TTTTTTTGTC‑‑TTG‑‑‑‑‑‑T‑TTTTT‑‑‑TTTT‑‑TTTTTGT‑‑‑‑A‑AAAAT‑AAAAGTAAGA‑TTTGGATCAAcc                                                                                                                  <  1:1748693/126‑1 (MQ=255)
                 aTTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGC‑‑TTGT‑‑‑‑TT‑TTTTT‑‑‑TTTT‑‑TTTTTTT‑‑‑‑A‑AAAAA‑AAAATTAAAA‑tttttaaaaaa                                                                                                                   >  2:856992/1‑120 (MQ=255)
                     gTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGC‑‑TTGT‑‑‑‑TT‑TTTTT‑‑‑TTTT‑‑TTTTTGT‑‑‑‑T‑AAAAA‑TAAAGTTAGT‑TTTTGATGAACCaaa                                                                                                               >  1:2131276/1‑128 (MQ=255)
                      tAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGC‑‑TTG‑‑‑‑‑TT‑TTTTTTTATTTT‑‑TTTTTGT‑‑‑‑A‑AAAAT‑AAAAGTAAGA‑TTTGGATCAACCaa                                                                                                                >  1:2632966/1‑128 (MQ=255)
                       tataatgCCTATTTTATAGGATTTTTATTATACTTATAAAAATTACAACGCTTTCAAATTTTT‑TTTTTTAGGC‑‑TTGTT‑‑‑TT‑TTTTT‑‑‑TTTT‑‑TTTTTGT‑‑‑‑A‑AAAAT‑AAAAGTAAGA‑TTTGGATCAACCaaaa                                                                                                              <  2:2524617/122‑1 (MQ=255)
                        aaaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGC‑‑TTGTT‑‑‑TT‑TTTTT‑‑‑TTTT‑‑TTTTTTT‑‑‑‑A‑AAAAT‑AAATGTATTA‑TTTTGAAAAACCaaaaa                                                                                                             >  2:1226057/1‑127 (MQ=255)
                         aaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGC‑‑TTGTT‑‑‑TT‑TTTTT‑‑‑TTTT‑‑TTTTTGT‑‑‑‑A‑AAAAT‑AAAATTAAGA‑TTTGGTAAAACCaaaaat                                                                                                            >  2:2965873/1‑126 (MQ=255)
                         aaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGC‑‑TTGTT‑‑‑TT‑TTTTT‑‑‑TTTT‑‑TTTTTGT‑‑‑‑A‑AAAAT‑AAAATTAAGA‑TTTGGATCCACCAAAAca                                                                                                            >  1:2454643/1‑127 (MQ=255)
                                  ttttctttgtttttttttATACTTTTCAAAAATAAAACCCTTTAAAATTTTA‑TTTTTTAGGG‑‑TTGTTT‑‑TT‑TTTTT‑‑‑TTTT‑‑TTTTTGT‑‑‑‑A‑AAAAT‑AAAAGTAAGA‑TTTGGATCAACCAAAACTA‑TAT‑Caaa                                                                                                  <  1:3133757/118‑1 (MQ=255)
                                  tGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGC‑‑TTGTT‑‑‑TT‑TTTTT‑‑‑TTTT‑‑TTTTTTT‑‑‑‑A‑AAAAT‑AAAATTAAAA‑TTTTGATAAACCAAAACTA‑TAT‑Caaaa                                                                                                 >  1:2493470/1‑128 (MQ=255)
                                   gTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGC‑‑TTGTT‑‑‑TT‑TTTTT‑‑‑TTTT‑‑TTTTTTT‑‑‑‑ATAAATT‑AAAAAAAAAA‑TTTGTATAAACCAAAACAA‑AAT‑Caaaa                                                                                                 >  1:2584485/1‑128 (MQ=255)
                                   gTTCTAGGCTTATTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGC‑‑TTT‑‑‑‑‑TT‑TTTTT‑‑‑TTTT‑‑TTTTTTT‑‑‑‑A‑AAAAT‑AAAAATATAA‑TTTTGAAAAACAAAAAATA‑Taa‑aaaaaaaa                                                                                              >  2:2777635/1‑128 (MQ=255)
                                     catAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGC‑‑TTGTT‑‑‑TT‑TTTTT‑‑‑TTTT‑‑TTTTTGT‑‑‑‑A‑AAATT‑AAAAGTAAGA‑TTTGGATCAACCAAAACTA‑TAT‑Caaaaaaa                                                                                              >  2:2391813/3‑128 (MQ=255)
                                      atatgttttttATTAAAATTATAAACTATACAACGCTTTCAAATTTTT‑TTTTTTTGGCTTTTT‑‑‑‑‑TT‑TTTTT‑‑‑TTTT‑‑TTTTTGT‑‑‑‑A‑AAAAT‑AAAAGTAAGA‑TTTGGATCAACCAAAACTA‑TAT‑CAAAAAAAt                                                                                             <  1:2916799/122‑1 (MQ=255)
                                       tAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGC‑‑TTGTTT‑‑TT‑TTTTT‑‑‑TTTT‑‑TTTTTTT‑‑‑‑A‑AAAAT‑ATAATTAAGA‑TTTTGTTAAAACAAAACTA‑TAA‑Gaaaaaaaa                                                                                             >  2:3028072/1‑127 (MQ=255)
                                       tAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGC‑‑TTGTT‑‑‑TT‑TTTTT‑‑‑TTTT‑‑TTTTTTT‑‑‑‑A‑AAAAT‑AAAATTAATA‑TTTGAATCAACCAAAAATA‑TAT‑AAAAAAAAtt                                                                                            >  2:2482475/1‑128 (MQ=255)
                                       tAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGC‑‑TTGTT‑‑‑TT‑TTTTT‑‑‑TTTT‑‑TTTTTTT‑‑‑‑A‑AAAAA‑AAAATTAAAA‑TTTTGATCAACAAAAAATA‑AAT‑CAAAAAAAtt                                                                                            >  2:1568408/1‑128 (MQ=255)
                                       tAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGC‑‑TTGT‑‑‑‑TT‑TTTTT‑‑‑TTTT‑‑TTTTTGT‑‑‑‑A‑AAAAT‑AAAAATAATA‑ATTGGTTCAACCAAAAAT‑‑TTT‑AAAAAAAAATaa                                                                                          >  2:1718534/1‑128 (MQ=255)
                                           atttttATTATAATTATAAACATTAAAAAGCTTTTAAATTGTA‑TTTTTTAGGT‑‑TTG‑‑‑‑‑TT‑TTTTT‑‑‑TTTT‑‑TTTTTGT‑‑‑‑A‑AAAAT‑AAAAGTAAGA‑TTTGGATCAACCAAAACTA‑TAT‑CAAAAAAATTaaaaaa                                                                                      <  1:3094060/127‑1 (MQ=255)
                                             ttttttTATAATTATTAAAATTAAAACTGTTTTAATTTTTT‑TTTTTTTTGC‑‑TTGTT‑‑‑TT‑TTTTT‑‑‑TTTT‑‑TTTTTGT‑‑‑‑A‑AAAAT‑AAAAGTAAGA‑TTTGGATCAACCAAAACTA‑TAT‑CAAAAAAATTaaaaaa                                                                                      <  1:1094492/128‑1 (MQ=255)
                                             ttttATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGC‑‑TTGTTT‑‑TT‑TTTTT‑‑‑TTTT‑‑TTTTTTT‑‑‑‑A‑AAAAT‑AAAATTAATA‑TTTGGATAAACCAAAACTA‑TAA‑AAAAAAATTTaaaaa                                                                                       >  2:2871961/1‑128 (MQ=255)
                                                tattatACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGC‑‑TTGTT‑‑‑TT‑TTTTT‑‑‑TTTT‑‑TTTTTTT‑‑‑‑A‑AAAAT‑TAAATTTATA‑TTTTGAACAACCAAAAATA‑TAT‑CAAAAAAATTaaaaaaata                                                                                   >  1:2240576/1‑126 (MQ=255)
                                                  ttatACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGC‑‑TTGTTT‑‑TT‑TTTTT‑‑‑TTTT‑‑TTTTTTT‑‑‑‑A‑AAAAT‑AAAAATAAAA‑TTTTGATAAACCAAAAAAA‑TAt‑aaaaaaaattaaaaaaaatt                                                                                  >  2:936073/1‑127 (MQ=255)
                                                   tataCTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGC‑‑TTGTT‑‑‑TT‑TTTTT‑‑‑TTTT‑‑TTTTTTT‑‑‑‑A‑AAAAA‑AAAATTAAAA‑ATTTGAAAAACAAAAACTA‑TTA‑AAAAAAAATTaaataaaatatt                                                                                >  1:2946116/1‑126 (MQ=255)
                                                    ataCTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGC‑‑TTGTT‑‑‑TT‑TTTTT‑‑‑TTTT‑‑TTTTTTT‑‑‑‑A‑AAAAT‑AAAATTAAAA‑TTTTTTAAAACCAAAA‑AA‑TATAAAAAAAAATTAAAAAAAAaagtt                                                                               >  2:639073/1‑128 (MQ=255)
                                                    ataCTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGC‑‑TTGTT‑‑‑TT‑TTTTT‑‑‑TTTT‑‑TTTTTTT‑‑‑‑A‑AAAAT‑AAAAGTAAAA‑TTTTGAACAACCACACATA‑TAA‑AAAAAAAATTAAAAAAAAtattt                                                                               >  2:1817803/1‑128 (MQ=255)
                                                    ataCTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGC‑‑TTG‑‑‑‑‑TTATTTTT‑‑‑TTTT‑‑TTTTTTT‑‑‑‑A‑AAAATAAAAATTAATA‑TTTATAAAAAAAAAAAAAA‑TAT‑‑AAAAAAATTaaaaaaaaaaataa                                                                              >  2:1346587/1‑122 (MQ=255)
                                                     ttattttaataaTTACTAAGTTTTTAAAGTGTATTTTTTTTGAT‑‑TTT‑‑‑‑‑TT‑TTTTT‑‑‑TTTT‑‑TTTTTGT‑‑‑‑A‑AAAAT‑AAAAGTAAGA‑TTTGGATCAACAAAAACTA‑TAT‑CAAAAAAATTAAAAAAAAtagttta                                                                             <  2:1676140/117‑1 (MQ=255)
                                                     taCTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGC‑‑TTGTT‑‑‑TT‑TTTTT‑‑‑TTTT‑‑TTTTTTT‑‑‑‑A‑AAAAA‑AAAAAAAAAATTTTGAAAAAACAAAAACTA‑AAA‑AAAAAAAATTAAAAAAAAtattt                                                                               >  2:714739/1‑128 (MQ=255)
                                                        ttATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGC‑‑TTGTTT‑‑TT‑TTTTT‑‑‑TTTT‑‑TTTTTTT‑‑‑‑A‑AAAAA‑AAAATTAATA‑TTTGTATAAACCAAAAATA‑TAT‑AAAAAAAATAAAAAAAAAtattttat                                                                            >  2:202190/1‑127 (MQ=255)
                                                        ttATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGC‑‑TTG‑‑‑‑‑TT‑TTTTT‑‑‑TTTT‑‑TTTTTTTTTTAA‑AAAAA‑AAAAATAATA‑TTTATAT‑AAAAAAAAAAA‑TAA‑TAAAAAAAATAAAAAAAAaaatttaa                                                                            >  1:611790/1‑127 (MQ=255)
                                                         tATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGC‑‑TTGTT‑‑‑TT‑TTTTT‑‑‑TTTT‑‑TTTTTGT‑‑‑‑A‑AAAAA‑AAAATTAAGA‑TTTTGTTAAAACAAAAATA‑TTT‑AAAAAAAATTAAAAAAAAtagtttagtt                                                                          >  2:3163402/1‑128 (MQ=255)
                                                          ataaaaaTTACAACTCTTTCAAAGTGTA‑TTTTTTAGGCTTTTT‑‑‑‑‑TT‑TTTTT‑‑‑TTTT‑‑TTTTTGT‑‑‑‑A‑AAAAT‑AAAAGTAAGA‑TTTGGATCAACCAAAACTA‑TAT‑CAAAAAAATTAAAAAAAATAGTTTAGTTg                                                                         <  2:2720933/122‑1 (MQ=255)
                                                          aTCAACATTACAACGCTTTCAAAGTATA‑TTTTTTAGGC‑‑TTGTT‑‑‑TT‑TTTTT‑‑‑TTTT‑‑TTTTTTT‑‑‑‑A‑AAAAT‑AAAATTAATA‑TTTTGTTAAAACAAAACTA‑TAT‑AAAAAAAAATAAAAAAAAtattttagttt                                                                         >  2:353584/1‑127 (MQ=255)
                                                           tCAAAATTACAACGGTTTAAAAGTGTATTTTTTTGGGT‑‑TTT‑‑‑‑‑TT‑TTTTT‑‑‑TTTT‑‑TTTTTGT‑‑‑‑A‑AAAAT‑AAAAGTAAGA‑TTTGGATCAACCAAAACTA‑TAT‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAg                                                                       <  1:2758364/128‑1 (MQ=255)
                                                            taaCATTATAAAGGATTTATAGTTTT‑TTTTTTTGGT‑‑TTGT‑‑‑‑TT‑TTTTT‑‑‑TTTT‑‑TTTTTGT‑‑‑‑A‑AAAAT‑AAAAGTAAGA‑TTTGGATCAACCAAAACTA‑TAT‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGt                                                                      <  1:1205266/127‑1 (MQ=255)
                                                                aTTACAACGCTTTCAAAGTGTA‑TTTTTTAGGC‑‑TTGTTTT‑TT‑TTTTT‑‑‑TTTT‑‑TTTTTTT‑‑‑‑T‑AAAAT‑AAAAATAAAT‑TTTTGGTAAAACAAAAAAATTAA‑AAAAAAAATTAAAAAAAAtattttagtgtgtt                                                                      >  1:3181273/1‑123 (MQ=255)
                                                                   taaaCGTTTTTAAATTGTTTTTTTTTGGGT‑‑TTT‑‑‑‑‑TT‑TTTTT‑‑‑TTTT‑‑TTTTTGT‑‑‑‑A‑AAAAT‑AAAAGTAAGA‑TTTGGATCAACCAAAACTA‑TAT‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAAt                                                               <  1:2037904/126‑1 (MQ=255)
                                                                   aCAACGCTTTCAAAGTGTA‑TTTTTTAGGC‑‑TTGTTT‑‑TT‑TTTTT‑‑‑TTTT‑‑TTTTTTT‑‑‑‑A‑AAAAT‑AAAAGTAAGT‑TTTGGTAAAACCAAAAATT‑AAT‑AAAAAAAATTAAAAAAAAtattttatatgtgttaaaa                                                                 >  1:2877013/1‑116 (MQ=255)
                                                                   aCAACGCTTTCAAAGTGTA‑TTTTTTAGGC‑‑TTG‑‑‑‑‑TT‑TTTTT‑‑‑TTTT‑‑TTTTTTT‑‑‑‑A‑AAAAT‑AAAATTAAGA‑TTTGGTTAAACCAAAACTA‑TAT‑AAAAAAAATTAAAAAAAAATTTTTATTTTAGTTTCaaaaa                                                              >  2:900430/1‑126 (MQ=255)
                                                                    taaatattttAAAGTGTT‑TTTTTTTGGT‑‑TTGTT‑‑‑TT‑TTTTT‑‑‑TTTT‑‑TTTTTGT‑‑‑‑A‑AAAAA‑AATAGTAATA‑TTTGGATCAACCAAAACTA‑TAT‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAAt                                                               <  1:2669622/122‑1 (MQ=255)
                                                                    cAACGCTTTCAAAGTGTA‑TTTTTTAGGC‑‑TTGTT‑‑‑TT‑TTTTT‑‑‑TTTT‑‑TTTTTGT‑‑‑‑A‑AAAAT‑AAAATTAATA‑ATTGGATAAACCAAAACTA‑TAT‑AAAAAAAATTAAAAAAAATATTTTATTTGAGTTTAAAAt                                                               >  2:2466953/1‑128 (MQ=255)
                                                                    cAACGCTTTCAAAGTGTA‑TTTTTTAGGC‑‑TTGTT‑‑‑TT‑TTTTT‑‑‑TTTT‑‑TTTTTGA‑‑‑‑A‑AAAAA‑AAAAGTAATA‑TTTTGATCAACAAAAAATA‑TTT‑CAAAAAAATATAAAAAAATAGTTTAGTTgtttgtcataa                                                               >  2:2831762/1‑118 (MQ=255)
                                                                      aCGCTTTCAAAGTGTA‑TTTTTTAGGC‑‑TTGTT‑‑‑TT‑TTTTT‑‑‑TTTT‑‑TTTTTGT‑‑‑‑A‑AAAAT‑AAAAGTAAGA‑TTTTGATAAAACAAAAAAA‑TAT‑AAAAAAAATAAAAAAAAATAGTTTATTTGAATTAAAAAtat                                                             >  1:468485/1‑126 (MQ=255)
                                                                      aCGCTTTCAAAGTGTA‑TTTTTTAGGC‑‑TTGT‑‑‑‑TT‑TTTTT‑‑‑TTTT‑‑TTTTTTT‑‑‑‑T‑AAAAT‑AAAATTTATT‑TTTTGAAAAACAAAAACAT‑TAT‑AAAAAAAAATTAAAAAAATATTTTATTTGTTTTTaaaaaatg                                                            >  1:101139/1‑124 (MQ=255)
                                                                        gCTTTCAAAGTGTA‑TTTTTTAGGC‑‑TTGTTTTTTT‑TTTTT‑‑‑TTTT‑‑TTTTTTT‑‑‑‑A‑AAAAA‑AAAAGTAATA‑TTTGGATCAACCAAAAATA‑TTA‑AAAAAAAATTAAAAAAATTTATTTTTTTGTGTTTAAAAta                                                              >  2:2255142/1‑127 (MQ=255)
                                                                           ttCAAAGTGTA‑TTTTTTAGGC‑‑TTGTTT‑‑TT‑TTTTT‑‑‑TTTT‑‑TTTTTTT‑‑‑‑A‑AAAAT‑AAAAGTAAAA‑TTTGTATAAAACAAAAATA‑AAT‑AAAAAAAATTAAAAAAAATATTTTATTTTATTTTAAAATATgaaa                                                         >  1:1147651/1‑125 (MQ=255)
                                                                            tCAAAGTGTA‑TTTTTTAGGC‑‑TTGTT‑‑‑TT‑TTTTT‑‑‑TTTT‑‑TTTTTTT‑‑‑‑A‑AAAAT‑AAAATTTATA‑TTTTGAAAAAACAAAAAAA‑AAA‑CAAAAAAATTAAAAAAAATAATTTAATTAATTTTAAAAAAAGCatat                                                       >  1:2985651/1‑128 (MQ=255)
                                                                             taatgtttttttttttGGTT‑‑TTT‑‑‑‑‑TT‑TTTTT‑‑‑TTTT‑‑TTTTTGT‑‑‑‑A‑AAAAT‑ATAAGTAAGA‑TTTGGATCAACCAAAACTA‑TAT‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCatatat                                                     <  1:1284463/118‑1 (MQ=255)
                                                                             cAAAGTGTA‑TTTTTTAGGC‑‑TTGTTT‑‑TT‑TTTTT‑‑‑TTTT‑‑TTTTTGT‑‑‑‑A‑AAAAT‑AAAATTAATA‑TTTGGATAAACCAAAAATA‑TAA‑AAAAAAAATTAAAAAAAATATTTTTTTTTAGTTTAAAATATGCaaaa                                                       >  2:117126/1‑125 (MQ=255)
                                                                               aaGTGTA‑TTTTTTAGGC‑‑TTGTTT‑‑TT‑TTTTT‑‑‑TTTT‑‑TTTTTTT‑‑‑‑A‑AAAAT‑AAAATTAATA‑TTTGGATCAACCAAAAATA‑AAT‑AAAAAAAATTAAAAAAAATATTTTTTTTTATTTTAAaatataaatataa                                                     >  2:496652/1‑127 (MQ=255)
                                                                               aaGTGTA‑TTTTTTAGGC‑‑TTGTT‑‑‑TT‑TTTTT‑‑‑TTTT‑‑TTTTTTT‑‑‑‑T‑AAAAT‑AAAATTAATA‑TTTTGATAAACCAAAAATA‑ATT‑AAAAAAAATTAAAAAAAATATTTTATTTGAATTTAAAAtaatcatttatt                                                    >  1:2714142/1‑117 (MQ=255)
                                                                                aGTGTA‑TTTTTTAGGC‑‑TTGTTT‑‑TT‑TTTTT‑‑‑TTTT‑‑TTTTTTT‑‑‑‑A‑AAAAT‑AAAAGTAAAA‑TTTGGTAAAACCAAAACTA‑TAA‑AAAAAAAATTAAAAAAAAATGTTTTGTTGTGTTTTaaaattgaaatatat                                                    >  1:351290/1‑116 (MQ=255)
                                                                                aGTGTA‑TTTTATAGGC‑‑TTGTT‑‑‑TT‑TTTTT‑‑‑TTTT‑‑TTTTTTT‑‑‑‑T‑AAAAT‑AAAATTAAGA‑TTTGGATCAAACAAAACTA‑TAT‑AAAAAAAATTAAAAAAAATAGTTTTTTTTAATATAAAAACAGCAtatatat                                                   >  2:2586265/1‑127 (MQ=255)
                                                                                  tgtA‑TTTTTTAGGC‑‑TTGTT‑‑‑TT‑TTTTT‑‑‑TTTT‑‑TTTTTTT‑‑‑‑A‑AAAAT‑AAAATTAAGA‑TTTGGATCAACCAAAAATA‑TAT‑AAAAAAAATTAAAAAAAATAATTTTTTTGATTTTAAAATATGAATATATATTa                                                 >  2:1958081/1‑128 (MQ=255)
                                                                                   gtA‑TTTTTTAGGC‑‑TTGTTT‑‑TT‑TTTTT‑‑‑TTTT‑‑TTTTTTT‑‑‑‑A‑AAAAT‑AAAATTAAAA‑TTTTGAAAAACAAAAAAAT‑TAT‑AAAAAAAATAAAAAAAAATATTTTTTTTTAGTTTAAAAAGTGAatattattaa                                                 >  2:2497999/1‑122 (MQ=255)
                                                                                    tA‑TTTTTTAGGC‑‑TTGTTT‑‑TT‑TTTTT‑‑‑TTTT‑‑TTTTTTT‑‑‑‑A‑AAAAT‑AAAATTAAAA‑TTTTGATAAAACAAAAATA‑ATA‑AAAAAAAATTAAAAAAAATAATTTATTTTAATTTAAAAAATTAATATataataa                                                >  2:1895779/1‑127 (MQ=255)
                                                                                    tA‑TTTTTTAGGC‑‑TTG‑‑‑‑‑TT‑TTTTT‑‑‑TTTT‑‑TTTTTGT‑‑‑‑A‑AAAAT‑AAAAGTAATA‑TTTGGATCAACCAAAACTA‑TTT‑AAAAAAAATTAAAAAAAATATTTTAGTTTAGTTTAAAATCTACatataaataaaaaa                                             >  2:799811/1‑119 (MQ=255)
                                                                                         ttttAGGC‑‑TTGTT‑‑‑TT‑TTTTT‑‑‑TTTT‑‑TTTTTGT‑‑‑‑A‑AAAAA‑AAAATTAATA‑TTTGGAGAAACCAAAACTT‑TAT‑AAAAAAAATTAAAAAAAAAATTTTTTTTGAATATCAAAAATGCAAAAAAACTACAAAgc                                           >  2:1447416/1‑127 (MQ=255)
                                                                                                  ttttttttttt‑ttttt‑‑‑tttt‑‑tttttGT‑‑‑‑A‑AAAAT‑AAAAGTTAGA‑TTTGGATCAACCAAAACTA‑TAT‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAtt                                       <  1:936073/119‑1 (MQ=255)
                                                                                                   tttttttttt‑ttttt‑‑‑tttt‑‑tttttGT‑‑‑‑A‑AAAAT‑AAAAGTAAGA‑TTTGGATCAAACAAAACTA‑TAT‑AAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAttt                                      <  2:392589/120‑1 (MQ=255)
                                                                                                    tgtttgttt‑ttttt‑‑‑tttt‑‑tttttGT‑‑‑‑A‑AAAAT‑AAAAGTAAGA‑TTTGGATCAACCAAAACTA‑TAT‑CAAAAAAATTATAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTa                                     <  2:1621488/121‑1 (MQ=255)
                                                                                                     tttttttt‑ttttt‑‑‑tttt‑‑tttttGT‑‑‑‑A‑ATATT‑AAAAGTAAGA‑TTTGGATCAACCAAAACTA‑TAT‑CAAAAAAATTAAAAAAAATAGTTTAGTTTAGTTTCAAATCTGCATATATAGTACAAAGGAATTTAt                                    <  1:1478396/122‑1 (MQ=255)
                                                                                                     tttttttt‑ttttt‑‑‑tttt‑‑tttttGT‑‑‑‑A‑AAAAT‑AAAAGTAAGA‑TTTGGATCAACCAAAACTA‑TAT‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTAt                                    <  2:2635594/122‑1 (MQ=255)
                                                                                                     ttgttttt‑ttttt‑‑‑tttt‑‑tttttGT‑‑‑‑A‑AAAAT‑AAAATTAATA‑TTTGGATAAACCAAAAATT‑TAT‑AAAAAAAATTAAAAAAAATTTTTTATTTTAGTTTAAAATATTAATATATATTAAAAAGGAAttttt                                    >  2:423104/7‑126 (MQ=255)
                                                                                                       gttttt‑ttttt‑‑‑tttt‑‑ttttttt‑‑‑‑A‑AAAAA‑AAAATTAATA‑TTTGGATAAACCAAAAATA‑TAA‑CAAAAAAAATAAAAAAAATAGTTTTGTTTATTTTAAAATCTGCATATATTGTACAAAGGAATTTAtta                                  >  2:611327/5‑126 (MQ=255)
                                                                                                        ttttt‑ttttt‑‑‑tttt‑‑tttttGT‑‑‑‑A‑AAAAT‑AAAAGTAAGA‑TTTTGATTAATTAAAACTA‑TAT‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGAt                                 <  1:1884407/125‑1 (MQ=255)
                                                                                                          ttt‑ttttt‑‑‑tttt‑‑tttttGT‑‑‑‑A‑AAAAT‑AAAAGTAAGA‑TTTGTATCAACAAAAACTA‑TAT‑CAAAAAAATTAAATAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAg                               <  1:2417168/127‑1 (MQ=255)
                                                                                                            t‑ttttt‑‑‑tttt‑‑ttttttT‑‑‑‑A‑AAATT‑AAAAGTAATA‑TTTTGATTAATTATTAATA‑TTT‑TAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaa                             <  1:1941638/128‑1 (MQ=255)
                                                                                                                  t‑‑‑tttt‑‑tttttGT‑‑‑‑A‑AAAAT‑AAAAGTAAGA‑TTTGGATCAACCAATACTA‑TAT‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaaaa                        <  2:2433892/128‑1 (MQ=255)
                                                                                                                      tttt‑‑tttttGT‑‑‑‑A‑AAAAT‑AAAAGTAAGA‑TTTGGATAAACCAAAACTA‑TAT‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAAt                       <  1:2838324/128‑1 (MQ=255)
                                                                                                                       ttt‑‑tttttGT‑‑‑‑A‑AAAAT‑AAAAGTAAGA‑TTTGGATCAACCAAAACTA‑TAT‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATg                      <  2:2743793/128‑1 (MQ=255)
                                                                                                                       ttt‑‑tttttGT‑‑‑‑A‑AAAAT‑AAAAGTAAGA‑TTTGGATAAACAAAAAATA‑TAT‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATg                      <  1:1633791/128‑1 (MQ=255)
                                                                                                                         t‑‑tttttGT‑‑‑‑A‑TATAT‑AAATGTAATA‑TTTGTATAAAAAAAAATTA‑TTT‑AAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGa                    <  1:418797/128‑1 (MQ=255)
                                                                                                                          tatttttGT‑‑‑‑A‑AATAT‑AAAAGTAAGA‑TTTGGATCAAACAAAAATA‑TAT‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATgg                     <  2:2921852/126‑1 (MQ=255)
                                                                                                                            tttttGT‑‑‑‑A‑AAAAT‑AAAAGTAAGA‑TTTGGTTCAACCAAAACTT‑TTT‑AAAAAAATTTTAAAAAAATAGTTTATTTGATTTTAAAATATGAATATATATTAAAAAGTAATTTTTGTTTTAAAAAAATTGAt                   >  2:2546086/1‑128 (MQ=255)
                                                                                                                             tttttt‑‑‑‑A‑AAAAT‑AAAAGTAAGA‑TTTGGATCAACCAAAAATA‑TAT‑AAAAAAAATTAAAAAAAATATTTTTTTTTAGTTTCAAATATGCATATATAATACAAAGGAATTTTTGATTTAAAAAAATTGAtt                  >  2:1003979/1‑128 (MQ=255)
                                                                                                                               ttGT‑‑‑‑A‑ATAAT‑TTTAGTTAGA‑TTTTGATTAATAAAAATTA‑TAT‑AAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGAATATATAGTACAAAGGAATTTATTATAGAAAAAAATGGATTAg                <  1:2300158/128‑1 (MQ=255)
                                                                                                                               ttGT‑‑‑‑A‑AAAAT‑AATAGTAAGA‑TTTGGATAAACCAAAACTA‑TAT‑AAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAg                <  2:3094788/128‑1 (MQ=255)
                                                                                                                               ttGT‑‑‑‑A‑AAAAT‑AAAAGTAAGA‑TTTGGATAAACCAAAACTA‑TAT‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAg                <  2:2654636/128‑1 (MQ=255)
                                                                                                                                tGT‑‑‑‑A‑AAAAT‑ATAAGTAAGA‑TTTGGATAAACCTAAACTA‑TAT‑TAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGATTTTATGATAGAAAAAAATGGATTatc               <  1:852173/128‑3 (MQ=255)
                                                                                                                                  t‑‑‑‑A‑AAAAT‑AAAAGTAAGA‑TTTGGATCAACAAAAACTA‑TAT‑CAAAAAAATTAAAAAAATTAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTatcaa             <  2:2677918/128‑5 (MQ=255)
                                                                                                                                       a‑aaaaT‑AAAAGTAAGA‑TTTGGATCAACCAAAACTA‑TAT‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTatcaac            <  2:150899/128‑6 (MQ=255)
                                                                                                                                         aaaaT‑AAAAGTAAGA‑TTTGGATCAATCAAAACTA‑TAT‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGAATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGAt           <  2:1097327/128‑1 (MQ=255)
                                                                                                                                           tat‑atAAGTAAGA‑GATGGATCAAACAAAACTA‑TAT‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTatcaactaa         <  2:2852900/127‑9 (MQ=255)
                                                                                                                                           aaT‑AAAAGTAAGA‑TTTGGATTAATTAAAAATA‑TGT‑AAAATAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATaa         <  1:82972/128‑1 (MQ=255)
                                                                                                                                            aT‑AAAAGTAATA‑TTTTGATCAATAAAAACTA‑TAT‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTatcaactaat        <  2:3066399/128‑10 (MQ=255)
                                                                                                                                             ttataaGTAAGA‑TTTGGATAAACAAAAAATA‑TAT‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAAt        <  1:1561876/124‑1 (MQ=255)
                                                                                                                                             t‑AATAGTATGA‑TTTGTATCAAACATAATTA‑TAT‑CAAATAATTTAAATAAAATAGTTTAGTTGAGTTTCAAATCTGAATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATc       <  2:2131276/128‑1 (MQ=255)
                                                                                                                                             t‑AAAAGTATGA‑TTTGGATCAAACAATACTA‑TAT‑CAAAAAAATT‑AAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATcc      <  1:897859/128‑1 (MQ=255)
                                                                                                                                               aataGTAAGA‑TTTGTATCAACCAATAATT‑TAT‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAATGAATTTATGATAGAAAAAAATGGATTAGTTGATAATcc      <  2:761163/125‑1 (MQ=255)
                                                                                                                                               aaaaGTAAGA‑TTTGGATCAACCAAAACTA‑TAT‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATcc      <  2:330976/128‑1 (MQ=255)
                                                                                                                                               aaaaGTAAGA‑TTTGGATCAACCAAAACTA‑TAT‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGCAATTTATGATAGAAAAAAATGGATTAGTTCTTAATcc      >  1:719254/1‑128 (MQ=255)
                                                                                                                                                 aaGTATTA‑TTTGTATCATATAAAAATA‑TAT‑AAAAAAAATTAAAAATAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAt    <  1:1385997/128‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                  
ATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGC‑‑TTG‑‑‑‑‑TT‑TTTTT‑‑‑TTTT‑‑TTTTTGT‑‑‑‑A‑AAAAT‑AAAAGTAAGA‑TTTGGATCAACCAAAACTA‑TAT‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTT  >  CP016816/203797‑204051

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑