Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816420,2530CA43.1% 1021.0 / inf 1158intergenic (‑536/+307)JCVSYN2_01895/JCVSYN2_0190030S ribosomal protein S10/tRNA‑Thr
Reads supporting (aligned to +/- strand):  ref base C (203/435);  new base A (404/79);  total (615/543)
Fisher's exact test for biased strand distribution p-value = 0.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 1199 total aligned reads displayed.

AAAACTACTAGCACTTTTTTA‑AAAAA‑TTTAAAATTAAAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAA‑TCATTATCTATTAATCAATTTTATGCT‑CG‑‑TTTTT‑TTTTTTTTTTTTACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTT‑AATAAAAATGGAAAAGAAAGTGAATTGTCATAAT‑AATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTA  >  CP016816/420128‑420380
                                                                                                                                    |                                                                                                                                 
  aaataatataaattttttA‑AAAAA‑TTTTTAATTTTAATAATTTAAATATTTTTAAAATTTTTAAAATATTTTTAAA‑TAATTATATATTAATCAATTTTATTCG‑CGT‑TTTTT‑TTTTTTTTTTTTACaaa                                                                                                                                <  2:2857064/116‑1 (MQ=255)
  aaCTACTAGCACTTTTTTA‑AAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAA‑TCATTATCTATTAATCAATTTTATGCT‑CG‑‑TTTTT‑TTTTTTTTTTTTaaaaaa                                                                                                                               >  1:1146407/1‑128 (MQ=255)
   actactAGCACTTTTTTA‑AAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAA‑TCATTATCTATTAATCAATTTTATGCT‑CG‑‑TTTTT‑TTTTTTTTTTTaaaaaaaa                                                                                                                              >  1:1201157/1‑128 (MQ=255)
   aatactacCACTTTTTTA‑AAAAA‑TTTTTAATTTTAATAAATTAATTATTTTTCAAATTGTTAATTTTTTTTAAAA‑TAATTATATATAAATCAATTTTATGCT‑CGT‑TTTTT‑TTTTTTTTTTTTACaaaa                                                                                                                               <  2:806430/126‑1 (MQ=255)
   aataatatcACTTTTTTA‑AAAAATTTTTAAATTTAATTAA‑TTAATTATTTTAAAAATTGTTAAATTATTTTCAAA‑AAATAATCTATTAATAAATTTAATGCT‑CG‑‑TTTTT‑TTTTTTTTTTTTACaaaaa                                                                                                                              <  2:282226/120‑1 (MQ=255)
    ctactaGCACTTTTTTA‑AAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAA‑TCATTATCTATTAATCAATTTTATGCT‑CG‑‑TTTTT‑TTTTTTTTTTTTTaaaaaaa                                                                                                                             >  1:2429812/1‑127 (MQ=255)
    ctactaGCACTTTTTTA‑AAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAA‑TCATTATCTATTAATCAATTTTATGCT‑CG‑‑TTTTT‑TTTTTTTTTTTTACAAAAat                                                                                                                             >  1:2659295/1‑128 (MQ=255)
    attcttttaCTTTTTTA‑AATAA‑TTTTTAATTTTAATAAATTTATTTTTTTTAATATTGGTTAATTTTTTTTAAA‑TTTTTATTTTATTATCAATTTTTTTCT‑GGT‑TTTTT‑TTTTTTTTTTTTACaaaaa                                                                                                                              <  1:1728688/120‑1 (MQ=255)
    ataatataatttttttA‑AAATA‑TTTTTAATTTTAAAAATTTATTATTTTTTAAAATTTTTAAATTATTTTAAAA‑TAATTATTAATAAATAAATTTTTTTTTGTT‑‑TTTTT‑TTTTTTTTTTTTACaaaaa                                                                                                                              <  1:72517/118‑1 (MQ=255)
    aaactaTCACTTTTTAA‑AAAAA‑TTTTAAATTTTAATAAATTAATTATTTTTAAAATTTTTAAATTATTTTAAAA‑TCTTTATTTATTAATAAATTTTATGCG‑CG‑‑‑TTTT‑TTTTTTTTTTTTACAAAAata                                                                                                                            <  1:2687569/126‑1 (MQ=255)
      tcaataatttttttA‑AAAAA‑TTTTTAATTTTAAAAAAATAATTATTTTTAAAATTTTTTAAAAATTTTAAAA‑AAATTATATTATAATTAATTTTATTTT‑TGTTTTTTT‑TTTTTTTTTTTTACAAAAat                                                                                                                             <  1:291814/120‑1 (MQ=255)
        tttcACTTTTTTA‑AAAAA‑TTTTTATATTTAATAAATAAATAATTTTTAAAATTTTTAATTTAATTTAAAA‑TAAAATTCTATTAAAAAATTTTATCGT‑GG‑‑TTTTT‑TTTTTTTTTTTTACAAAAATATaa                                                                                                                         <  1:675979/125‑1 (MQ=255)
        tttaaattttttA‑AAAAA‑TTTTTAATTTTAAAAAATTATTTTTTTTTTAAATTTTTAAATTTTTTTAAAT‑TAATTTTATTTTAATAAATTTTTTGCT‑TT‑‑TTTTT‑TTTTTTTTTTTTACAAAAATATaa                                                                                                                         <  1:2994721/122‑1 (MQ=255)
        tataaattttttA‑AAAAA‑TTTTTAATTTTAATAATTTAATTTTTTTTAAAATTTTTAAATTTTTTTAAAA‑AAATTATATATTAATAAATTTTATTCT‑CT‑‑TTTTT‑TTTTTTTTTTTTACAAAAATATaa                                                                                                                         <  2:1295077/122‑1 (MQ=255)
         aGCACTTTTTTA‑AAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAA‑TCATTATCTATTAATCAATTTTATGCT‑CG‑‑TTTTT‑TTTTTTTTTTTTAAAAAAATATAat                                                                                                                        >  2:184702/1‑128 (MQ=255)
          gCACTTTTTTA‑AAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAA‑TCATTATCTATTAATCAATTTTATTCT‑CG‑‑TTTTT‑TTTTTTTTTTTAAAAAAAATAAAatt                                                                                                                       >  2:1890584/1‑128 (MQ=255)
          gCACTTTTTTA‑AAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAA‑TCATTATCTATTAATCAATTTTATGCT‑CG‑‑TTTTT‑TTTTTTTATTTTACAAAAATAAAatt                                                                                                                       >  2:2765372/1‑128 (MQ=255)
          gCACTTTTTTA‑AAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAA‑TCATTATCTATTAATCAATTTTATGCT‑CG‑‑‑‑TTT‑TTTTTTTTTTTTACAAAAATATAatttt                                                                                                                     >  1:1665177/1‑127 (MQ=255)
          gCACTTTTTTA‑AAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAA‑TCATTATCTATTAATCAATTTTATGCT‑AG‑‑TTTTT‑TTTTTTTTTTTTTaaaaaaaaaataa                                                                                                                       >  1:3106990/1‑121 (MQ=255)
           cACTTTTTTA‑AAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAA‑TCATTATCTATTAATCAATTTTATGCT‑CG‑‑TTTTTATTTTTTTTTTTTAaaaaaaaaatatt                                                                                                                       >  2:2615320/1‑121 (MQ=255)
            aCTTTTTTA‑AAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAA‑TCATTATCTATTAATCAATTTTATGCT‑CGTTTTTTT‑TTTTTTTTTTTTAAAAAAATATAatt                                                                                                                       >  2:65030/1‑128 (MQ=255)
            aCTTTTTTA‑AAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAA‑TCATTATCTATTAATCAATTTTATGCT‑CGT‑TTTTT‑TTTTTTTTTTTTACAAAAATATAattt                                                                                                                      >  2:2646142/1‑128 (MQ=255)
            aCTTTTTTA‑AAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAA‑TCATTATCTATTAATCAATTTTATGCT‑CG‑‑TTTTT‑TTTTTTTTTTTTAAAAAAaattaaatta                                                                                                                     >  2:2580363/1‑128 (MQ=255)
            aCTTTTTTA‑AAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAA‑TCATTATCTATTAATCAATTTTATGAT‑CG‑‑TTTTT‑TTTTTTTTTTTaaaaaaaaaaaaaataa                                                                                                                     >  2:200421/1‑119 (MQ=255)
              ttttttATAAAAT‑TTTTAATTTTATAAAATTTAATT‑TTTTTTAATTTTTTAATTTTTTTTATTA‑TAATTTTCTATTTATTTATTTTATTTT‑GGT‑TTTTT‑TTTTTTTTTTTTACAAAAATATAatttat                                                                                                                    <  2:1394783/128‑1 (MQ=255)
              ttttttA‑AAAAATTTTTAATTTTAAATAA‑TTTATTTTTTTTAAAATTTTTTAAATATTTTAAAA‑TAATTATTTATTAAATAATTTTATTGT‑CGT‑TTTTT‑TTTTTTTTTTTTACAAAAATATAatttat                                                                                                                    <  1:2961468/128‑1 (MQ=255)
              ttttttA‑AAAAA‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAA‑TCATTATCTATTAATCAATTTTATGCT‑CG‑‑TTTTT‑TTTTTTTTTTTTAAAAAAATATAatttatt                                                                                                                   >  2:69111/1‑128 (MQ=255)
              ttttttA‑AAAAA‑TTTTAAATTTTTATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAA‑TCATTATATATTTATAAAATTTATGCG‑CGT‑TTTTT‑TTTTTTTTTTTTACAAAAATATAatttat                                                                                                                    <  2:2078409/128‑1 (MQ=255)
                 tttA‑AAAAA‑TTTTTATTTTTAATAAATTAATTTTTTTTAAATTTTTTTATTTTTTTTTAAA‑TAATTTTTTTTTTTTAAATTTTTTTTT‑AG‑‑‑TTTT‑TTTTTTTTTTTTACAAAAATATAATTTATTTGAt                                                                                                               <  1:2229070/128‑1 (MQ=255)
                  ttA‑AAAAA‑TTTTTAATTTTTATAAATTAATTATTTTTAAAATTTTTAAATTATTTTAAAA‑TAATTATCTATTAATAAATTTTTTTGT‑‑A‑‑TTTTT‑TTTTTTTTTTTTACAAAAATATAATTTATTTGAtt                                                                                                              <  1:1075819/128‑1 (MQ=255)
                      aaaaa‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAA‑TCATTATCTATTAATCAATTTTATGCT‑CG‑‑‑‑TTT‑TTTTTTTTTTTTAAAAAAATAAAATTTATTTTATTAAAc                                                                                                          >  2:2267391/1‑128 (MQ=255)
                       aaaa‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAA‑TCATTATCTATTAATCAATTTTATGCT‑CGT‑TTTTT‑TTTTTTTTTTTTAAAAAAAAAAAATTTATttaattaa                                                                                                            >  2:35520/1‑128 (MQ=255)
                       aaaa‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAA‑TCATTATCTATTAATCAATTTTATGCT‑CG‑‑TTTTT‑TTTTTTTTTTTTACAAAAATATAATTTATTTTATTaaa                                                                                                           >  2:1809828/1‑128 (MQ=255)
                       aaaa‑TTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAA‑TCATTATCTATTAATCAATTTTATGCT‑CG‑‑TTTTT‑TTTTTTTTTTTTAAAAAAATATAATTTATTTTATTaaa                                                                                                           >  2:21144/1‑128 (MQ=255)
                           atttttaattttaatAACTTAATTATTTTTAAAATTTTTAAATTTATTTCAAA‑TCATTATCAATTAAACAATTTTATGCT‑CG‑‑TTTTT‑TTTTTTTTTTTTACAAAAATATAATTTATTTGATTAAACGt                                                                                                        <  1:2619341/116‑1 (MQ=255)
                              tttaattttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAA‑TCATTATCTATTAATCAATTTTATGCT‑CG‑‑TTTTT‑TTTTTTTTTTTTAAAAAAATAAAATTTATTTAATTAAAATtata                                                                                                     >  1:2782183/10‑128 (MQ=255)
                              ttaaatttaaatAA‑TTTATTTTTTTTCAATATTTTTATTTATTTTATAA‑TTATTATTTATTAATAAATTTTATTGT‑AG‑‑‑TTTT‑TTTTTTTTTTTTACAAAAATATAATTTATTTGATTAAACGTATAtt                                                                                                   <  1:376212/126‑1 (MQ=255)
                                taattttaatAAATTAAATATTTTTAAAATTTTTTAATTATTTTAAAA‑TAATTATATTTTAATAAATTTTATTCTATT‑‑TTTTT‑TTTTTTTTTTTTACAAAAATATAATTTATTTGATTAAACGTatat                                                                                                    <  2:910415/121‑1 (MQ=255)
                                aattttaaatAA‑TGAATTTTTTTTTAAATTTTTTATTTTTTTTTAAATTAATTATAT‑TTAATAAATTTTTATTT‑TT‑‑TTTTT‑TTTTTTTTTTTTACAAAAATATAATTTATTTGATTAAACGTATAttt                                                                                                  <  1:146175/122‑1 (MQ=255)
                                 aattttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAA‑TCATTATCTATTAATCAATTTTATGCT‑CG‑‑TTTTT‑TTTTTTTTTTTTACAAAAATATAATTTATTTTATTAAACTTATAttt                                                                                                  >  2:2696910/7‑128 (MQ=255)
                                  attttaataatTTAATTATTTTTAAATTTGTTTTATTATTTTAAAA‑TAATTATTTATTTATTAATTTTTTTCT‑TG‑‑TTTTT‑TTTTTTTTTTTTACAAAAATATAATTTATTTGATTAAACGTATATTTa                                                                                                 <  2:3046362/123‑1 (MQ=255)
                                  attttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAA‑TCATTATCTATTAATCAATTTTATGCT‑CG‑‑TTTTT‑TTTTTTTTTTTTAAAAAAATAAATTTTATTTGATTAAACGtttattta                                                                                                 >  1:3207474/6‑128 (MQ=255)
                                  attttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAA‑TCATTATCTATTAATCAATTTTATGCT‑CG‑‑‑TTTT‑TTTTTTTTTTTTAAAAAAAAATAATTTATTTTATTAAAAGTATATTTAt                                                                                                >  1:303191/6‑128 (MQ=255)
                                     ttattAAATGATTTATTTTTAAAATTGTTTAATTTTTTTTAAA‑TTATTATATATTAATAAATTTTATGCT‑CGT‑TTTTT‑TTTTTTTTTTTTACAAAAATATAATTTATTTGATTAAACGTATATTTATg                                                                                               <  1:2829993/124‑1 (MQ=255)
                                            attaaTTTTTTTTTAAATTTTTAAATTATTTTAAAA‑TAATTATATATTAATAAATTTTATTTT‑AT‑‑TTTTT‑TTTTTTTTTTTTACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTt‑aataa                                                                                      <  2:1058344/125‑1 (MQ=255)
                                             ttatttttttttAAATTTTTTATTTTATTTTAAAA‑TTATTATTTATTATTTATTTTTATGTT‑TG‑‑‑TTTT‑TTTTTTTTTTTTACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTT‑AATaaaa                                                                                    <  2:301219/121‑1 (MQ=255)
                                             tGAATTATTTTTCAAATTGTTAAATTATTTTCAAA‑TCATTATCTATTAATCAATTTTATGCT‑CGTTTTTTT‑TTTTTTTTTTTTAAAAAAATAAAATTTATTTTATTAAAATTATATTTATTTTt‑aata                                                                                       >  2:487198/1‑128 (MQ=255)
                                                attattTTTCAAATTGTTAAATTATTTTCAAA‑TCATTATCTATTAATCAATTTTATGCT‑CG‑‑TTTTT‑TTTTTTTTTTTTAAAAAAATATAATTTATTTGATTAAAATTATATTTATGTTT‑AATAAAAAt                                                                                  >  2:2509010/1‑128 (MQ=255)
                                                 ttattTTTCAAATTGTTAAATTATTTTCAAA‑TCATTATCTATTAATCAATTTTATGCT‑CG‑‑TTTTT‑TTTTTTTTTTTTAAAAAATTTTAATTAATTTTTTTAAACTTATATTTATTTTT‑AATAAAAAtt                                                                                 >  2:3122140/1‑127 (MQ=255)
                                                 ttattTTTCAAATTGTTAAATTATTTTCAAA‑TCATTATCTATTAATCAATTTTATGCT‑CG‑‑TTTTT‑TTTTTTTTTTTTAAAAAAATATAATTTATTTTATTAAAATTATATTTATTTTT‑AATAAAAATg                                                                                 >  2:1961523/1‑128 (MQ=255)
                                                 ttattTTTCAAATTGTTAAATTATTTTCAAA‑TCATTATCTATTAATCAATTTTATGCT‑CG‑‑‑TTTT‑TTTTTTTTTTTTACAAAAATATAATTTATTTTATTAAACGTATATTTATTTTT‑AATAAAAAttt                                                                                >  2:3163861/1‑126 (MQ=255)
                                                 ttattTTTCAAATTGTTAAATTATTTTCAAA‑TCATTATCTATTAATCAATTTTATGCT‑CG‑‑‑‑TTT‑TTTTTTTTTTTTACAAAAATATAATTTATTTTATTAAAATTATATTTATTTTT‑AATAAAAAttta                                                                               >  2:1527683/1‑125 (MQ=255)
                                                 ttattTTTAAAATTTTTAAATTTTTTTTAAA‑TATTTTTTTTTTAATAAATTTTATGTT‑CG‑‑TTTTT‑TTTTTTTTTTTTACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTT‑AATAAAAATg                                                                                 <  1:1417767/128‑1 (MQ=255)
                                                 ttattTTTAAAATTTTTAAATTATTTTAAAA‑TAATTTTTTATTAATAAATTTTATTAT‑‑A‑‑TTTTT‑TTTTTTTTTTTTACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTT‑AATAAAAATgg                                                                                <  1:92360/128‑1 (MQ=255)
                                                 ttataTTTCAAATTGTTAAATTATTTTCAAA‑TCATTATCTATTAATCAATTTTATGCT‑CG‑‑‑‑TTT‑TTTTTTTTTTTTA‑AAAAATATAATTTATTTTATTAAAATAAAATTTTTTTTT‑AATAAAAAtttaa                                                                              >  1:1940822/1‑124 (MQ=255)
                                                 atttttttAAAATTTTTAAATTTTTTTCAAA‑TAATTTTTTATTTAATAATTTTATTGT‑TG‑‑TTTTT‑TTTTTTTTTTTTACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTT‑AATAAAAATg                                                                                 <  1:2728044/125‑1 (MQ=255)
                                                   atttttaaaatttttaaaTTATTTTTAAA‑TATTTTTATTTTAATTAATTTTATTTT‑TGTTTTTTT‑TTTTTTTTTTTTACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTT‑AATAAAAATg                                                                                 <  1:604065/128‑1 (MQ=255)
                                                       tttaatttttttaaTTTTTTTAATA‑TAATTATATTTTTATTAATTTTATTTT‑TT‑‑TTTTT‑TTTTTTTTTTTTACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTT‑AATAAAAATGGAaaag                                                                           <  1:1566085/116‑1 (MQ=255)
                                                        tCAAATTGTTAAATTATTTTCAAA‑TCATTATCTATTAATCAATTTTATGCT‑CGT‑TTTTT‑TTTTTTTTTTTTACAAAAATATATTTTATTTTATTAAACTTATATTATTTTTT‑AATAAAAATTTaaaat                                                                           >  2:2415581/1‑127 (MQ=255)
                                                           aaTTGTTAAATTATTTTCAAA‑TCATTATCTATTAATCAATTTTATGCT‑CG‑‑‑TTTT‑TTTTTTTTTTTTAAAAAAATATAATTTATTTTATTAAACTTATATTTATGTTT‑AATAAAAATGAAaaagaaatt                                                                      >  1:2576724/1‑126 (MQ=255)
                                                             tttttAAA‑TATTTTCAAA‑TAAATATATATTAATCAATTTTATGCT‑CG‑‑TTTTT‑TTTTTTTTTTTTACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTT‑AATAAAAATGGAAAAGAAAGTGa                                                                    <  1:286594/125‑1 (MQ=255)
                                                             ttGTTAAATTATTTTCAAA‑TCATTATCTATTAATCAATTTTATGCT‑CG‑‑TTTTT‑TTTTTTTTTTTTACAAAAATATAATTTATTTTATTAAACTTATATTTATTTTT‑AATAAAAATGTAAAATAAATTg                                                                     >  2:766682/1‑128 (MQ=255)
                                                              tGTTAAATTATTTTCAAA‑TCATTATCTATTAATCAATTTTATGCT‑CG‑‑TTTTT‑TTTTTTTTTTTTAAAAAAATATAATTTATTTTATTAAAATTATTTTTTTTTTT‑AATAAAAATTTAaaataaattaa                                                                    >  2:548195/1‑124 (MQ=255)
                                                               ttttaaTTATTTTTAAA‑TAATTTTTTTTTTATTAATTTTTTTTT‑TT‑‑TTTTT‑TTTTTTTTTTTTACAAAAATATAATTTATTTGATTAAAAGTATATTTATGTTT‑AATAAAAATGGAAAAGAAAGTGaa                                                                   <  1:2387893/124‑1 (MQ=255)
                                                               tttAAATTATTTTAAAA‑TAATTATTTTTTTATTAATTTTATTTT‑TT‑‑TTTTT‑TTTTTTTTTTTTACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTT‑AATAAAAATGGAAAAGAAAGTGaa                                                                   <  2:410028/127‑1 (MQ=255)
                                                                 tAAATTATTTTCAAA‑TCATTATCTATTAATCAATTTTATGCT‑CG‑‑‑TTTT‑TTTTTTTTTTTTACAAAAATATAATTTATTTGATTAAACGTATATTTTTTTTT‑AATAAAAATGGAAAATAAAGTTAATTg                                                                >  2:1691013/1‑128 (MQ=255)
                                                                  aaaTTATTTTCAAA‑TCATTATCTATTAATCAATTTTATGCT‑CGT‑TTTTT‑TTTTTTTTTTTTAAAAAAATATAATTTATTTTATTAAAAGTTTATTTTTTTTT‑ATTAAAAATTTAAAATAAaattaatt                                                                 >  2:217939/1‑128 (MQ=255)
                                                                    tttattTTAAAA‑TAATTATATATTTATTAATTTT‑TTTT‑TT‑‑TTTTT‑TTTTTTTTTTTTACAAAAATATAATTTATTTGATTAAAAGTATATTTATGTTT‑AATAAAAATGGAAAAGAAAGTGAATTGTCa                                                             <  2:1769579/127‑1 (MQ=255)
                                                                    attattTTCAAA‑TCATTATCTATTAATCAATTTTATGCT‑CG‑‑‑TTTT‑TTTTTTTTTTTTAAAAAAATAAAATTTATTTGATTAAACGTATATTTATGTTT‑AATAAAAATTGAAAAGAAATTGAATTGTCa                                                             >  2:2902671/1‑128 (MQ=255)
                                                                     ttattTTCAAA‑TCATTATCTATTAATCAATTTTATGCT‑CG‑‑TTTTT‑TTTTTTTTTTTTACAAAAATATAATTTATTTGATTAAACTTATATTTATTTTT‑AATAAAAATGTAAAAAAAAGTGaaatttaa                                                             >  1:2028112/1‑122 (MQ=255)
                                                                                  cATTATCTATTAATCAATTTTATGCT‑CGT‑TTTTT‑TTTTTTTTTTTTAAAAAAATATAATTTATTTAATTAAAAGTATTTTTATTTTT‑AATAAAAATTTAAAAAAAATTTAATTTTAAAAAa‑aatttaa                                                 >  2:1455039/1‑128 (MQ=255)
                                                                                  cATTATCTATTAATCAATTTTATGCT‑CG‑‑‑TTTT‑TTTTTTTTTTTTAAAAAAATAAATTTTATTT‑TTTTAACCTATTTTTTTTTTTAAATAAAAATGTAATAAAAGTTTAATTG‑AATAATAaatttaatt                                               >  1:3166366/1‑128 (MQ=255)
                                                                                        cTATTAATCAATTTTATGCT‑CG‑‑TTTTT‑TTTTTTTTTTTTACAAAAATAAAATTTATTTTATTAAACGAATATTTATGTTT‑AATAAAAATGTAAAATAAATTGAATTGTCATAAA‑AATTTAATTAAatt                                          >  1:1000468/1‑127 (MQ=255)
                                                                                        cTATTAATCAATTTTATGCT‑CG‑‑TTTTT‑TTTTTTTTTTTTAAAAAAATATAATTTATTTTATTAAACGTATTTTTATTTTT‑AATAAAATTTTAAAATAAATTGAATTGTAATAAT‑AATTTAATTAAata                                          >  2:325805/1‑128 (MQ=255)
                                                                                         tATTAATCAATTTTATGCT‑CG‑‑‑TTTT‑TTTTTTTTTTTTACAAAAATAAAATTTATTTTATTAAAATTTTATTTATGTTT‑AATAAAAATTAAAAATAAATTGAAATTTAATAAT‑AATTTAATTAAaaata                                        >  2:1581958/1‑128 (MQ=255)
                                                                                           ttAATCAATTTTATGCT‑CGT‑TTTTT‑TTTTTTTTTTTTAAAAAAATATAATTTATTTGATTAAACTTATTTTTATTTTT‑AATAAAAATTTAAAAAAAAGTGAATTGAAATAAT‑AATTTAATTAAatata                                        >  2:84779/1‑128 (MQ=255)
                                                                                             aaTCAATTTTATGCT‑CGT‑TTTTT‑TTTTTTTTTTTTAAAAAAATTTAATTTATTTAATAAAAAGAATATTTATTTTT‑AAAAAAAATATAAAATAAATTGAATTTTATTATT‑AATTTAATTTAAtttata                                      >  1:2092716/1‑128 (MQ=255)
                                                                                             aaTAAATTTTTTTTT‑TG‑‑TTTTT‑TTTTTTTTTTTTACAAAAATATAACTTATTTGATTAAACGTATATTTATGTTT‑AATAAAAATGGAAAAGAAAGTGAATTGTCATAAT‑AATTTAATTAAATATATaa                                     <  1:2530900/128‑1 (MQ=255)
                                                                                               tCAATTTTATGCT‑CGT‑TTTTT‑TTTTTTTTTTTTTAAAAAAAATAATTTATTTTATTAAAAGTATATTTTTTTTT‑AATAAAAATGGAAAAAAAAGTTATTTTTAATATA‑AATTTAATTAAATATaaaaa                                    >  1:248332/1‑127 (MQ=255)
                                                                                                  aTTTTATGCT‑CG‑‑TTTTT‑TTTTTTTTTTTTAAAAAAATATAATTTATTTTATTAAAATTATATTTTTTTTT‑AATAAAAATTGAAAAGAAATTAAATTGAAATAAT‑AATTTAATTAAATATATAAAAAtt                                >  1:2637261/1‑127 (MQ=255)
                                                                                                       aTGCT‑CG‑‑‑TTTT‑TTTTTTTTTTTTAAAAAAATATAATTTATTTGATTAAACGTATATTTATGTTT‑AATAAAAATGGAAAATAAATTTAATTGTAATAAT‑AATTTAATTAAATATATAACAATTAAAGtt                          >  2:2740326/1‑128 (MQ=255)
                                                                                                           ttttttttttt‑ttttttttttttACAAAAATATAATTTATTTGATTAAAAGTATATTTATGTTT‑AATAAAAATGGAAAAGAAAGTGAATTGTCATAAT‑AATTTAATTAAATATATAACAATGTAAGtt                          <  2:1094717/122‑1 (MQ=255)
                                                                                                           ttttttttttt‑ttttttttttttAAAAAAATATAATTTATTTGATTAAAAGTATATTTATGTTT‑AATAAAAATGGAAAAGAAAGTGAATTGTCATAAT‑AATTTAATTAAATATATAACAATGTAAGtt                          <  1:534024/122‑1 (MQ=255)
                                                                                                             tctcttttt‑ttttttttttttAAAAAAATATATTTTATTTGATTAAACGTATATTTATGTTT‑AATAAAAATGGAAAAGAAAGTGAATTGTCATAAT‑AATTTAATTAAATATATAACAATGTAAGtttt                        <  1:1838145/124‑1 (MQ=255)
                                                                                                              tttttttt‑ttttttttttttACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTT‑AATAAAAATGGAAAAGAAAGTGAATTGTCATAAT‑AATTTAATTAAATATATAACAATGTAAGTTTTa                       <  2:133768/125‑1 (MQ=255)
                                                                                                              tttttttt‑ttttttttttttAATAATATTTAATTTATTTGATTAAATTTTTATTTATGTTT‑AATAAAAATGGAAAAGAAAGTGAATTGTCATAAT‑AATTTAATTAAATATATAACAATGTAAGTTTTa                       <  1:1356926/125‑1 (MQ=255)
                                                                                                                cgtttt‑ttttttttttttAAAAAAATATATTTTATTTTATTAAACTTATTTTTATTTTT‑AATAAAATTGGAAAAAAAATTTAATTTAAATAAT‑ATTTTAATTAAATATATAAAAATGTAAGTTTTaaa                     >  2:588928/3‑128 (MQ=255)
                                                                                                                 gtttt‑ttttttttttttACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTT‑AATAAAAATTGAAAAGAAAGTGAATTGTCATAAT‑AATTTAATTAAATATATAACAATTTAAGTTTTaaaa                    >  1:1277264/2‑128 (MQ=255)
                                                                                                                 gtttt‑ttttttttttttAAAAAAAAATAATTAATTTGATTAAAATTATATTTATTTTA‑AAAAAAAATGTAAAATAAATTTAATTGTAATAAT‑AATTTAATTAAATATAAAAAAATTTAATTTTAaaaa                    >  1:2139578/2‑128 (MQ=255)
                                                                                                                  tttt‑ttttttttttttttttTAATATTATTTATTTTATTTTATTTATTTTTATTTTT‑TATAAAAATTTAATATAAAGTTATTTTTAATAAT‑AATTTAATTAAATATATAAAAATGTAAGTTTTAAAac                   <  1:416154/128‑1 (MQ=255)
                                                                                                                    tt‑ttttttttttttACAAATATATAATTTATTTGATTAAAAGTATATTTATGTTT‑AATAAAAATGGAAAAGAAAGTGAATTGTCATAAT‑AATTTAATTAAATATATAACAATGTAAGTTTTAAAactt                 <  2:3095941/128‑1 (MQ=255)
                                                                                                                    tt‑ttttttttttttAAAAAAATATAATTTATTTGATTAAACGTATATTTATGTTT‑AATAAAAATGGAAAAGAAAGTGAATTGTCATAAT‑AATTTAATTAAATATATAACAATGTAAGTTTTAAAactt                 <  1:305538/128‑1 (MQ=255)
                                                                                                                     t‑ttttttttttttACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTT‑AATAAAAATGGAAAAGAAAGTGAATTGTAATAAT‑AATTTAATTAAATATATAACAATGTAAGTTTTAAAactta                >  2:2462361/1‑128 (MQ=255)
                                                                                                                        tttttttttttACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTT‑AATAAAAATGTAAAATAATGTGAATTTTCATAAT‑AATTTAATTAAATATATAACAATGTAAGTTTTAAAacttact              >  2:1636019/1‑128 (MQ=255)
                                                                                                                         ttttttttttAAAAAAATATAATTTATTTGATTAAACGTATATTTATGTTT‑AATAAAAATGGAAAAGAAAGTGAATTGTCATAAT‑AATTTAATTAAATATATAACAATGTAAGTTTTAAAacttactt             <  1:852727/128‑1 (MQ=255)
                                                                                                                          attttttttACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTT‑AATAAAAATGGAAAAGAAAGGGAATTGTCATAAT‑AATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACttt            <  1:1611111/127‑1 (MQ=255)
                                                                                                                           ttttttttACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTT‑AATAAAAATGGAAAAGAAAGTGAATTGTCATAAT‑AATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACtttt           <  1:781460/128‑1 (MQ=255)
                                                                                                                           ttttttttACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTT‑AATAAAAATGGAAAAGAAAGTGAATTGTCATAAT‑AATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACtttt           <  2:2965944/128‑1 (MQ=255)
                                                                                                                               ttttACAAAAATATAATTTATTTTATTAAAAGTATATTTATGTTT‑AATAAAAATGGAAAAGAAAGTGAATTGTCATAAT‑AATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGt       <  2:1193753/128‑1 (MQ=255)
                                                                                                                                  tACAAAAATATAATTTATTTGATTAAAAGTATATTTATGTTT‑AATAAAAATGGAAAAGAAAGTGAATTGTCATAAT‑AATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGtttt    <  1:988865/128‑1 (MQ=255)
                                                                                                                                    |                                                                                                                                 
AAAACTACTAGCACTTTTTTA‑AAAAA‑TTTAAAATTAAAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAA‑TCATTATCTATTAATCAATTTTATGCT‑CG‑‑TTTTT‑TTTTTTTTTTTTACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTT‑AATAAAAATGGAAAAGAAAGTGAATTGTCATAAT‑AATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTA  >  CP016816/420128‑420380

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑