BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP016816	420,157	2 bp→TT	intergenic (‑440/+402)	JCVSYN2_01895 ← / ← JCVSYN2_01900	30S ribosomal protein S10/tRNA‑Thr

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP016816	420,157	0	A	T	99.4%	4384.1 / NA	1402	intergenic (‑440/+403)	JCVSYN2_01895/JCVSYN2_01900	30S ribosomal protein S10/tRNA‑Thr
Reads supporting (aligned to +/- strand): ref base A (3/5); new base T (731/663); total (734/668)
Fisher's exact test for biased strand distribution p-value = 4.90e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*	CP016816	420,158	0	A	T	98.1%	4218.6 / NA	1402	intergenic (‑441/+402)	JCVSYN2_01895/JCVSYN2_01900	30S ribosomal protein S10/tRNA‑Thr
Reads supporting (aligned to +/- strand): ref base A (4/23); new base T (730/645); total (734/668)
Fisher's exact test for biased strand distribution p-value = 5.94e-05
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 1471 total aligned reads displayed.

TAAATTCATTCATACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATT‑TAAAATTAAAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCT‑C‑G‑TTTTTTTTTTTTTTTTTACAAAAATATAATTTATTTGATTAAACGTATATT  >  CP016816/420035‑420285

||

 aaattCATTCATACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATt‑tttaattt                                                                                                                               >  2:1367803/1‑127 (MQ=255)

   attcattcATACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTATAAAACTACTATCACTTTTTTAAAAAATt‑tttaatttta                                                                                                                             >  2:1546792/1‑125 (MQ=255)

    ttcattcaTACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATt‑tttaattttaa                                                                                                                            <  2:1491060/128‑5 (MQ=255)

     tcattcatACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATt‑tttaattttaat                                                                                                                           <  1:2138893/128‑6 (MQ=255)

     tcattcatACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATt‑tttaattttaat                                                                                                                           <  1:2067459/128‑6 (MQ=255)

     tcattcatACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATt‑tttaattttaat                                                                                                                           >  2:261302/1‑123 (MQ=255)

     tcattcatACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATt‑tttaattttaat                                                                                                                           <  1:305780/128‑6 (MQ=255)

      cattcatACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATT‑TTTAATTTTAATa                                                                                                                          <  2:516120/128‑1 (MQ=255)

      cattcatACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATT‑TTTAATTTTAATa                                                                                                                          <  1:2495679/128‑1 (MQ=255)

      cattcatACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATT‑TTTAATTTTAATa                                                                                                                          <  1:274166/128‑1 (MQ=255)

      aattcatACTTTTATTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATT‑TTTAATTTTAATa                                                                                                                          <  1:795081/127‑1 (MQ=255)

        ttcatACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATT‑TTTAATTTTAATAAc                                                                                                                        <  2:2934666/128‑1 (MQ=255)

         tcatACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATT‑TTTAATTTTAATAACt                                                                                                                       <  1:637447/128‑1 (MQ=255)

            tACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATT‑TTTAATTTTAATAACTGaa                                                                                                                    <  1:2367793/128‑1 (MQ=255)

             aCTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATT‑TTTAATTTTAATAACTGAat                                                                                                                   <  2:2401988/128‑1 (MQ=255)

             aCTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTAATAGCTCTTTTTTAAAAAATT‑TTTAATTTTAATAACTGAat                                                                                                                   >  1:1697880/1‑128 (MQ=255)

             aCTATTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATT‑TTTAATTTTAATAACTGAat                                                                                                                   <  1:402269/128‑1 (MQ=255)

              cTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATT‑TTTAATTTTAATAACTGAatt                                                                                                                  <  1:154310/128‑1 (MQ=255)

              cTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATT‑TTTAATTTTAATAACTGAatt                                                                                                                  <  1:2849613/128‑1 (MQ=255)

               ttttAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATT‑TTTAATTTTAATAACTGAatta                                                                                                                 <  1:3125271/128‑1 (MQ=255)

                 ttAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATT‑TTTAATTTTAATAACTGAattatt                                                                                                               >  2:604065/1‑128 (MQ=255)

                    gTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATT‑TTTAATTTTAATAACTGAATTAttttt                                                                                                            <  2:420281/128‑1 (MQ=255)

                     tctcATAAATCTAATTTTCTAAAAATATTTTATCATTTAAAAAAATAATAATTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATT‑TTTAATTTTAATAACTGAATTATTTTTc                                                                                                           <  2:881155/128‑1 (MQ=255)

                      ctcATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATT‑TTTAATTTTAATAACTGAATTATTTTTCa                                                                                                          >  1:2624782/1‑128 (MQ=255)

                        cATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATT‑TTTAATTTTAATAACTGAATTATTTTTCaaa                                                                                                        <  2:1603707/128‑1 (MQ=255)

                         aTAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATT‑TTTAATTTTAATAACTGAATTATTTTTCAAAt                                                                                                       >  1:2726394/1‑128 (MQ=255)

                         aTAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATT‑TTTAATTTTAATAACTGAATTATTTTTCAAAt                                                                                                       >  2:1303744/1‑128 (MQ=255)

                          tAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATT‑TTTAATTTTAATAACTGAATTATTTTTCAAAtt                                                                                                      >  1:2797601/1‑128 (MQ=255)

                           aaaTCTAAGTATCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATT‑TTTAATTTTAATAACTGAATTATTTTTCAAATTg                                                                                                     <  2:2235291/128‑1 (MQ=255)

                            aaTCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATT‑TTTAATTTTAATAACTGAATTATTTTTCAAATTGt                                                                                                    <  2:2726394/128‑1 (MQ=255)

                                tAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATT‑TTTAATTTTAATAACTGAATTATTTTTCAAATTGTTaaa                                                                                                <  2:268227/128‑1 (MQ=255)

                                 aaGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATT‑TTTAATTTTAATAACTGAATTATTTTTCAAATTGTTGAat                                                                                               <  2:2770200/128‑1 (MQ=255)

                                 aaGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATT‑TTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAat                                                                                               <  1:1269155/128‑1 (MQ=255)

                                     ttCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATT‑TTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAattatt                                                                                           >  2:2975100/1‑128 (MQ=255)

                                       cTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATT‑TTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTAtttt                                                                                         <  1:1060594/128‑1 (MQ=255)

                                       cTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATT‑TTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTAtttt                                                                                         >  1:1000950/1‑128 (MQ=255)

                                        tAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTTAAAAATT‑TTTAATTTTAATAACTGAATGATTTTTAAAATTGTTAAATTATTTTc                                                                                        >  1:686015/1‑128 (MQ=255)

                                        tAAAATTATTTTATAATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATT‑TTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTc                                                                                        <  1:966104/128‑1 (MQ=255)

                                         aaaaTTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATT‑TTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCa                                                                                       <  1:1438409/128‑1 (MQ=255)

                                          aaaTTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATT‑TTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCaa                                                                                      <  1:1359293/128‑1 (MQ=255)

                                          aaaTTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATT‑TTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCaa                                                                                      <  2:2573077/128‑1 (MQ=255)

                                           aaTTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATT‑TTTAATTTTAATAACTGAATTATATTTCAAATTGTTAAATTATTTTCaaa                                                                                     >  2:715945/1‑128 (MQ=255)

                                             ttattTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATT‑TTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATc                                                                                   >  2:2182007/1‑128 (MQ=255)

                                              tattTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCAATTTTTTAAAAAATT‑ATTAATTAAAATAACTTAATTATTAAACAAATTGTAAAATTATTTTCAAATCa                                                                                  >  2:2132073/1‑128 (MQ=255)

                                                 tttATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATT‑TTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTa                                                                               >  1:3015125/1‑128 (MQ=255)

                                                  ttATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATT‑TTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTAt                                                                              <  2:1984798/128‑1 (MQ=255)

                                                  ttATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATT‑TTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTAt                                                                              >  1:1580861/1‑128 (MQ=255)

                                                  ttATCATTTAAAAAAATAATAATTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATT‑TTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTAt                                                                              <  1:1739292/128‑1 (MQ=255)

                                                    aTCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATT‑TTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCt                                                                            <  1:2447613/128‑1 (MQ=255)

                                                    aTCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATT‑TTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCt                                                                            >  1:266862/1‑128 (MQ=255)

                                                     tCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATT‑TTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTa                                                                           <  2:815771/128‑1 (MQ=255)

                                                      cATTTAAAAAAATAATAC‑TTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATT‑TTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTAtt                                                                         >  1:348293/1‑128 (MQ=255)

                                                       aTTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATT‑TTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTAtt                                                                         >  1:3095941/1‑128 (MQ=255)

                                                         ttAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATT‑TTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTaa                                                                       <  2:2509977/128‑1 (MQ=255)

                                                          tAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATT‑TTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAAt                                                                      >  1:3170072/1‑128 (MQ=255)

                                                               aaaTAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATT‑TTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAAtt                                                                 <  1:505059/128‑1 (MQ=255)

                                                                aataatACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATT‑TTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAat                                                                                               <  2:1666776/97‑1 (MQ=255)

                                                                 ataataCTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATT‑TTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAAtttt                                                               <  1:1960663/128‑1 (MQ=255)

                                                                     taCTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATT‑TTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATga                                                           >  2:1129406/1‑127 (MQ=255)

                                                                      aCTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATT‑TTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTAttat                                                          >  2:91695/1‑125 (MQ=255)

                                                                       tttttttttGTTGATATTTTATAAAACTAATAGCACTTTTTTTAAAAAAT‑TTTAATTTTAATAACTGAATTTTTTTTCAAATTGTTAAATTATTTTCAAATCATTTTATATTAATCAATTTTATGCT‑c                                                        <  1:1650340/127‑1 (MQ=255)

                                                                       cTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATT‑TTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCT‑c                                                        >  2:2848295/1‑128 (MQ=255)

                                                                       cTTTTATTAGTTGATATATTAGAAAACTACTAGCACATTTTTAAAAAATT‑TTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCT‑c                                                        >  2:3100719/1‑128 (MQ=255)

                                                                         tttATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATT‑TTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCT‑C‑G‑t                                                    >  2:3051647/1‑128 (MQ=255)

                                                                          ttattaGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATT‑TTTAATTTTAATAACt                                                                                                                       <  2:373031/63‑1 (MQ=255)

                                                                           tattaGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATT‑TTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCT‑C‑G‑ttt                                                  >  1:2964723/1‑128 (MQ=255)

                                                                           tattaGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATT‑TTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCT‑C‑G‑tta                                                  >  1:2564176/1‑127 (MQ=255)

                                                                           tattaGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATT‑TTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTAAAATAATTATCTATTAATCAATTTTATGCT‑C‑G‑ttt                                                  >  2:1429855/1‑128 (MQ=255)

                                                                             tttttttatttattatAAAAATACTATCAATTTTTTAAAAAATT‑TTTTATTTTAATTAATTTATTATTTTTCAAATTGTTAAATTATTTAAAAATCATTTTCTATTAAACAATTTTAAGCT‑C‑G‑ttttt                                                <  2:2307362/118‑1 (MQ=255)

                                                                              taGTTTATATATTATAAAACTAATATCAATTTTTTAAAAAATT‑TTTAATTTTAATAACTTAATTATTTTTAAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCT‑C‑G‑tttttt                                               <  2:108905/128‑1 (MQ=255)

                                                                                gTTGATATATTATAAAACTACTAGCACTTTTTTAAAAAATT‑TTTAATTTTAAAAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATAAATCAATTTTATGCT‑C‑G‑tttttttt                                             <  2:2442052/128‑1 (MQ=255)

                                                                                 ttttaaaatTATAAAAATAATATCAATTTTTTAAAAAATT‑TTTAATTTTAAAAAATTAAATATTTTTAAAATTGTTAAATTATTTTCAAAACATTAAAAATTAATCAAATTTATGCC‑C‑G‑ttttttttt                                            <  2:3192628/121‑1 (MQ=255)

                                                                                  ttatatatTAGAAAACTAATATCAATTTTTTAAAAAATT‑TTTAATTTTAATAAATTAATTATTTTTCAAATTTTTAAATTATTTTCAAATCAATAACTATTAAACAATTTTATGCT‑C‑G‑tttttttttt                                           <  2:1254356/126‑1 (MQ=255)

                                                                                    atatttTATAAAACAAATAGAAATTTTTTAAAAAATT‑TTTAATTTTAAAAAATTAATTATTTTTAAAATTTTTAAAATATTTTAAAATCATTATATTTTAATAAATTTTATGCT‑C‑G‑tttttttttttt                                         <  1:562266/128‑1 (MQ=255)

                                                                                     tataaTAGAAAACTACTATAAATTTTTTAAAAAAAT‑TTTATTTTTAATAAATGAATTATTTTTAAAATTTTTAAATTATTTTCAAATAATTATATATTAATAAATTTTATGCT‑C‑G‑ttttttttttttt                                        <  2:1938885/128‑1 (MQ=255)

                                                                                      atatTAGAAAACTACTAGCACTTTTTTAAAAAATT‑TTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCT‑C‑G‑tttttttttttttt                                       >  1:1132715/1‑128 (MQ=255)

                                                                                      atatTAGAAAACTACTAGCACTTTTTTAAAAAATT‑TTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCT‑C‑G‑tttttttttttttt                                       >  2:1767620/1‑128 (MQ=255)

                                                                                       tatTAGAAAACTACTAGCACTTTTTTAAAAAATT‑TTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCT‑C‑G‑ttttttttttttttt                                      >  1:2878772/1‑128 (MQ=255)

                                                                                           aGAAAACTACTAGCACTTTTTTAAAAAATT‑TTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCT‑A‑T‑TTTTTTTTTTTTTTTTTaa                                  >  2:2050194/1‑127 (MQ=255)

                                                                                              aaaCTACTAGCACTTTTTTAAAAAATT‑TTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCT‑C‑G‑ttttttttttttttttttaaaa                               >  2:3129370/1‑123 (MQ=255)

                                                                                               aactaaattcacaTTTATAAAAAATTATTAAATT‑TAATAACTTAATTATTTTTTAAATTGTTAAATTATTTTTAAATAAATATCTATTAAAAAATTTTATGCT‑C‑G‑‑TTTTTTTTTTTTTTTTACaaaaa                             <  2:1216918/119‑1 (MQ=255)

                                                                                                actactAGCACTTTTTTAAAAAATT‑TTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCT‑C‑G‑TTTTTTTTTTTTTTTTaaaaaaaa                             >  1:1201157/1‑128 (MQ=255)

                                                                                                actactAGCACTTTTTTAAAAAATT‑TTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCT‑C‑G‑TTTTTTTTTATTTTTTTAaaaaaa                             >  2:2088737/1‑128 (MQ=255)

                                                                                                 ctactaGCACTTTTTTAAAAAATT‑TTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCT‑C‑GTTTTTTTTTTTTTTTTTTACaaaaa                             >  2:301180/1‑128 (MQ=255)

                                                                                                  tactaGCACTTTTTTAAAAAATT‑TTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCT‑C‑G‑‑TTTTTTTTTTTTTTTTAAAAAAatat                          >  2:2652792/1‑128 (MQ=255)

                                                                                                  taatttaaattttttAAAAAATT‑TTTTATTTTAATTAATTTATTATTTTTAAAATTTTTAAATTATTTTAAAATAATTTTATTTTAATAAATTTTATGTT‑C‑G‑TTTTTTTTTTTTTTTTTACAAAAata                           <  1:2212280/119‑1 (MQ=255)

                                                                                                   actaGCACTTTTTTAAAAAATT‑TTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCT‑C‑G‑TTTTTTTTTTTTTTTTTAAAAAAatat                          >  2:2893469/1‑128 (MQ=255)

                                                                                                     tattaattttttAAAAAATT‑TTTAATTTTAATAACTTTATTTTTTTTTAAATTTTTAAATTTTTTTTAAATAATTATATATTAATAAATTTTTTTCT‑C‑G‑TTTTTTTTTTTTTTTTTACAAAAATATaa                        <  2:1713676/122‑1 (MQ=255)

                                                                                                      atatattttttAAAAAATT‑TTTAATTTTAATATTTTAATTTTTTTTTAAATTTTTAATTTTTTTTAAAATAATTTTTTATTTATTAATTTTATTTTAT‑T‑TTTTTTTTTTTTTTTTTAAAAAAATATaa                        <  2:1894338/123‑1 (MQ=255)

                                                                                                         aattttttAAAAATTT‑TTAATTTTAAA‑AAATTAATTATTTTTAAAATTTTTAAATTATTTTTAAATAATTATATATTAATAAATTTTATTCT‑C‑G‑‑‑TTTTTTTTTTTTTTTACAAAAATATAatttattt                 <  2:663572/126‑1 (MQ=255)

                                                                                                         aCTTTTTTAAAAAATT‑TTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCT‑C‑T‑TTTTTTTTTTTTTTTTTACAAAAATATTattta                    >  2:1020086/1‑128 (MQ=255)

                                                                                                           ttttttAAAAAATT‑TTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTAtttt                                                                                         <  1:1885122/60‑1 (MQ=255)

                                                                                                           ttttttAAAAAATT‑TTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCT‑C‑G‑TTTTTTTTTTTTTTTTTAAAAAAATAAAatttatt                  >  2:569201/1‑128 (MQ=255)

                                                                                                             ttttAAAAAATT‑TTTATTTTTAATTAATTAATTTTTTTTTAAATTTTTAAATTATTTTTATATAATTATTTATTAATAAATTTTATTCT‑T‑G‑‑TTTTTTTTTTTTTTTTACAAAAATATAATTTATTTGa               <  1:844110/128‑1 (MQ=255)

                                                                                                             ttttAAAAAATT‑TTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCT‑C‑G‑TTTTTTTTTTTTTTTTTAAAAAAATATAatttatttt                >  2:47510/1‑127 (MQ=255)

                                                                                                             ttttAAAAAATT‑TTTAATTTTAATAAATTATTTTTTTTTAAAATTTTTAAATTATTTTTAAATTTTTTTTTATTAATAAATTTTTTTTT‑T‑T‑TTTTTTTTTTTTTTTTTACAAAAATATAATTTATTTg                <  1:1823465/128‑1 (MQ=255)

                                                                                                               tttaaaaaTT‑TTTAATTTTTATAAATTAATTATTTTTAAAATTTTTAAATTATTTTAAAATAATTTTTTATTAATAAATTTTTTTGT‑CTT‑TTTTTTTTTTTTTTTTTACAAAAATATAATTTATTTGa               <  1:73543/125‑1 (MQ=255)

                                                                                                                taataaATT‑TTTAATTTTAATAAATTAATTTATTTTAAAATTTTTAAATTATTTTAAAATAATTATATATTAATAAATTTTTATTT‑T‑T‑TTTTTTTTTTTTTTTTTACAAAAATATAATTTATTTGAtt             <  2:1853540/128‑1 (MQ=255)

                                                                                                                    aaaTT‑TTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATCAT‑C‑T‑TTTTTTTTTTTTTTTTTTAAAAAAAAATATTTATTTTATTaaaa         >  2:180933/1‑127 (MQ=255)

                                                                                                                     aaTT‑TTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCT‑C‑G‑TTTTTTTTTTTTTTTTTACAAAAAAATAATTAATTTTATaaaaat        >  2:760468/1‑126 (MQ=255)

||

TAAATTCATTCATACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATT‑TAAAATTAAAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCT‑C‑G‑TTTTTTTTTTTTTTTTTACAAAAATATAATTTATTTGATTAAACGTATATT  >  CP016816/420035‑420285

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`