Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816202,4770CA41.4% 731.6 / inf 809intergenic (+255/‑420)JCVSYN2_00840/JCVSYN2_00845hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand):  ref base C (297/172);  new base A (88/244);  total (386/423)
Fisher's exact test for biased strand distribution p-value = 2.81e-25
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 901 total aligned reads displayed.

AAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTT‑AATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑‑TTAAA‑A‑AATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATAT  >  CP016816/202350‑202605
                                                                                                                                  |                                                                                                                                      
aagtaGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTT‑AATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAAT‑AAAAAAAAAAc                                                                                                                                        <  1:5762943/128‑1 (MQ=255)
 agtagtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTT‑AATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAAT‑AAAAAAAAAACa                                                                                                                                       <  2:7037442/128‑1 (MQ=255)
  ttagtGAAGTTAGTGTAAATATTAGATTTAAGTTTAATTAAAATACCATAAACTT‑AATAATTCTTATAATGTAGATACTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAAT‑AAAAAAAAAACaa                                                                                                                                      <  1:3749131/127‑1 (MQ=255)
   tagtTAAGTTAGTGTAAATAATAGAGTTAATTATAATTAAAAAACCATAAACAT‑AAAAAATATTATAATTTATAAAATCTAAATCAATAATATAATATAATAA‑TCTACACAAAT‑Aaaaaaaaaaaaaa                                                                                                                                     >  1:3301261/1‑127 (MQ=255)
   tactGAATTTATTGTAAATAATAAATTTAAGGTTAATTAAAATACCATAAAATT‑AATAAATCATATAAAGTATATACTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAAT‑AAAAAAAAAACAAt                                                                                                                                     <  2:5631565/125‑1 (MQ=255)
    agtGAATTTAGTTTAAATAATATAGTTAAGGTTAATTAAAATACCATAAACTT‑AATAATTCTTATAATGTAGATCCTCGTTATCTATTTTTTTATTTGTTTA‑TCTTCACAAAT‑AAAAAAAAAACAATc                                                                                                                                    <  2:240256/128‑1 (MQ=255)
    agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTT‑AATAATTCTTATAATTTATATAATCTTGATCTATTTTTTTATTTTATTA‑TCTTAACAAAT‑AAAAAAAAAAAAAta                                                                                                                                    >  1:2845606/1‑127 (MQ=255)
    agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTT‑AATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAAT‑Aaaaaaaaaaaaaaa                                                                                                                                    >  1:7858630/1‑126 (MQ=255)
    agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTT‑AATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAAT‑AAAAAAAAAACAATc                                                                                                                                    <  1:6913042/128‑1 (MQ=255)
    agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTT‑AATAATTCTTATAATGTAGATCCTCGTAATCTATTATTTTATTTATTTA‑TCTTCACAAAT‑Aaaaaaaaaaaaaac                                                                                                                                    >  1:3588718/1‑126 (MQ=255)
    agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTT‑AATAATTCTTATAATGTAGATCCTACTGATCTATTTTTTTATTTGTTTA‑TATTCACAAAT‑AAAAAAAAAACAAta                                                                                                                                    >  1:3910336/1‑127 (MQ=255)
    agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTT‑AATAATTCTTATAATATATATCCTCTTTATCTATTATATTATTATATTA‑TATACACAaaa‑aaaaaaaaaaaaaaa                                                                                                                                    >  1:4310627/1‑126 (MQ=255)
     gtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTT‑AATAATTCTTATAATTTATATACTCATTATCTAATAATTTATTTATATA‑TCTTAAAAAAT‑Aaaaaaaaaaaaaaaa                                                                                                                                   >  1:2452/1‑125 (MQ=255)
     gtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTT‑AATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAAT‑AAAAAAAAAACAAtac                                                                                                                                   >  1:749589/1‑126 (MQ=255)
      tGAAGTTAGTGTAAATAATAGAGTTAAGTTTAATTAAAATACCATAAACTT‑AATAATTCTTATAATGTAGATCCTCGTGATCTAAATTATTATTTATTTA‑TCTTAACAAAT‑AAAAAAAAAACAAtaaa                                                                                                                                  >  2:2537103/1‑125 (MQ=255)
      tGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTT‑AATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAAT‑AAAAAAAAAACAATccc                                                                                                                                  <  2:2829274/128‑1 (MQ=255)
       gAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTT‑AATAATTCTTATAATATAGATCATCATGATCTAATTATTTATTTTTTAA‑TCTTCACAAAT‑AAAAAAAAAACAAtaaac                                                                                                                                 >  2:2217135/1‑124 (MQ=255)
         aGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTT‑AATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAAT‑AAAAAAAAAACAATcacata                                                                                                                               >  2:6588472/1‑123 (MQ=255)
         aGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTT‑AATAATTCTTATAATGTAGATACTCTTGATCTAATTTTTTATTAGTATA‑TCTTCACAAAT‑AAAAAAAAAACAATcaaata                                                                                                                               >  2:2104038/1‑123 (MQ=255)
          gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTT‑AATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAAT‑AAAAAAAAAACAAAACCCtta                                                                                                                              >  2:6839653/1‑127 (MQ=255)
          gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAAATT‑AATAATTCTTATAATGTATATAATCGTGATCTATTTTTTTATTTGATTA‑TATTAAAAAAT‑AAAAAAAAAAAAATcaaatta                                                                                                                              >  2:7276805/1‑122 (MQ=255)
           ttAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTT‑AATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTATATTTTTTTA‑TCTTCACAAAT‑AAAAAAAAAACaaaacccaaaa                                                                                                                             >  1:4991077/1‑119 (MQ=255)
           ttAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTT‑AATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAAT‑AAAAAAAAAACAATCCCCttaa                                                                                                                             >  2:7671588/1‑126 (MQ=255)
           ttAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTT‑AATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAAT‑‑AAAAAAAAACAATCCCCttaaa                                                                                                                            >  1:7736444/1‑125 (MQ=255)
            tAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTT‑AATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTAGTTTA‑TCTTCACAAAT‑Aaaaaaaaaaaaaaaacaataaa                                                                                                                            >  2:7454319/1‑118 (MQ=255)
             aGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTT‑AATAATTCTTATAATGTATATCATCGTGATCTATTTTTTTATTTGTTTA‑TATTCACAAAT‑AAAAAAAAAACAAtaaaataaaaa                                                                                                                           >  1:1020966/1‑118 (MQ=255)
             aGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTT‑AATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAAT‑AAAAAAAAAAAAAAcccaataaaa                                                                                                                           >  1:6345304/1‑121 (MQ=255)
             aGTGTAAATAATAGAGTTAAGGTTAATTAAAATACAATAAACTT‑AATAATTCTTATAATTTAGATCCTCTATATCTATTTTTTTATTTGTTAA‑TCTTAACAAAT‑Aaaaaaaaaaaaaaaaaaataaaa                                                                                                                           >  1:1645715/1‑117 (MQ=255)
                    ataataGAGTTAAGGTTAATTAAAATACCATAAACTT‑AATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTA‑TCTTCACAAAT‑AAAAAAAAAACAATCACC‑‑‑‑‑‑Ttaaa‑a‑attaaaa                                                                                                            >  2:6390793/1‑128 (MQ=255)
                        taGAGTTAAGGTTAATTAAAATACCATAAACTT‑AATAATTCTTATAATGTAGCTCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAAT‑AAAAAAAAAACAAAACCATT‑‑‑‑AAaaata‑aataaaaa                                                                                                           >  1:7113036/1‑128 (MQ=255)
                        taGAGTTAAGGTTAATTAAAATACCATAAACTT‑AATAATTCTTATAATGTAGATCCTCTATATCTATATTTTTATTAATTTA‑TCATCACAAAT‑AAAAAAAAAACAAAACACTa‑‑‑‑aaaaa‑a‑aaaaaaaaa                                                                                                          >  1:4736226/1‑128 (MQ=255)
                        taGAGTTAAGGTTAATTAAAATACCATAAACTT‑AATAATTCTTATAATGTAGATCATCGTGATCTATTTTTTTATTTGTATA‑TCTTCACAAAT‑AAAAAAAAAACAAT‑‑CAAA‑‑‑‑TTAAA‑A‑ATTaaaaaaaa                                                                                                        >  2:6105752/1‑128 (MQ=255)
                         agagTTAAGGTTAATTAAAATACCATAAACTT‑AATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAAT‑AAAAAAAAAACaa                                                                                                                                      >  2:3483005/1‑105 (MQ=255)
                         agagTTAAGGTTAATTAAAATACCATAAACTT‑AATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATATGTTTA‑TCTTCACAAAT‑AAAAAAAAAACAAACACC‑‑‑‑‑‑TTAAA‑A‑ATTaaaaaaaaa                                                                                                       >  2:6657448/1‑128 (MQ=255)
                           agTTAAGGTTAATTAAAATACCATAAACTT‑AATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑‑‑‑‑‑TAAA‑A‑AATtaaaaaaaaaaa                                                                                                    >  1:680555/1‑128 (MQ=255)
                             ttATGGTTAATTAAAAAACAATAAAAAT‑AATAATAATAAAAATTTAAAACCTCGTTATATATTTTTTTATTTGTTTA‑TCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑‑‑‑‑TTAAA‑A‑ATTaaaaaaaaaaaaa                                                                                                   <  2:1682705/128‑1 (MQ=255)
                             ttAAGGTTAATTAAAATACCATAAACTT‑AATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAAT‑AAAAAAAAAACAATACCC‑‑‑‑‑‑TTAAA‑A‑ATTaaaaaaaaaaaaa                                                                                                   >  1:1877126/1‑128 (MQ=255)
                             ttAAGGTTAATTAAAATACCATAAACTT‑AATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAAT‑AAAAAAAAAACAAACCCCTT‑‑‑‑‑‑‑AA‑A‑AATaaaaaaaaaaaaaa                                                                                                  >  1:1980257/1‑128 (MQ=255)
                               aaGGTTAATTAAAATACCATAAACTT‑AATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTATTTA‑TCTTCACAAAA‑AAAAAAAAAACAAAACAAAT‑‑‑‑aaaaa‑a‑aaaaaaaaaaaaaaaa                                                                                                   >  2:3923249/1‑128 (MQ=255)
                               aaGGTTAATTAAAATACCATAAACTT‑AATAATTCTTATAATGTAGATCCTCTTGATCTATTTTATTATTTGTTTA‑TCTTAACAAAT‑AAAAAAAAAACAAAACC‑‑‑‑‑‑‑ATAAA‑A‑AATaaaaaaaaaaaaaaaa                                                                                                >  2:5899224/1‑128 (MQ=255)
                               aaGGTTAATTAAAATACCATAAACTT‑AATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAAT‑AAAAAAAAACCAAACCCC‑‑‑‑‑‑TTAAA‑A‑ATTaaaaaaaaaaaaaaa                                                                                                 >  1:6997168/1‑128 (MQ=255)
                               aaGGTTAATTAAAATACCATAAACTT‑AATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAAT‑AAAAAAAAAACAATCCCCt                                                                                                                                <  1:1717928/105‑1 (MQ=255)
                               aaGGTTAATTAAAATACCATAAACTT‑AATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑‑‑‑‑TTAAA‑A‑ATTaaaaaaaaaaaaaaa                                                                                                 >  1:6572512/1‑128 (MQ=255)
                               aaGGTTAATTAAAATACCATAAACTT‑AATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑‑‑‑‑TTAAA‑A‑ATTaaaaaaaaaaaaaaa                                                                                                 >  2:7350218/1‑128 (MQ=255)
                               aaGGTTAATTAAAATACCATAAACTT‑AATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAAT‑AAAAAAAAAACAATCCACTT‑‑‑‑‑‑‑AA‑A‑AATaaaaaaaaaaaaaaaa                                                                                                >  2:6323030/1‑128 (MQ=255)
                               aaGGTTAATTAAAATACCATAAACTT‑AATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAAT‑AAAAAAAAAACAAAACCATT‑‑‑‑‑‑‑AA‑A‑AATaaaaaaaaaaaaaaaa                                                                                                >  2:4204871/1‑128 (MQ=255)
                                atgTTATTTAAAATAACATTAAATT‑AATAAATATTATAATTTATATAATAGTTATATATTTTTTTTTTTGTTTA‑TTTTAAAAAAT‑AAAAAAAAAACAATACCC‑‑‑‑‑‑TTAAA‑A‑ATTaaaaaaaaaaaaaaaa                                                                                                <  2:7191659/126‑1 (MQ=255)
                                aGGTTAATTAAAATACCATAAACTT‑AATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑‑‑‑‑TTAAA‑A‑ATTaaaaaaaaaaaaaaaa                                                                                                >  1:7278089/1‑128 (MQ=255)
                                aGGTTAATTAAAATACCATAAACTT‑AATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTAACAAAT‑AAAAAAAAAAAAAAAAC‑‑A‑‑‑‑TTAAA‑A‑ATTaaaaaaaaaaaaaaaa                                                                                                >  2:481768/1‑128 (MQ=255)
                                aGGTTAATTAAAATACCATAAACTT‑AATAATTCTTATAATGTAGATCCTCGTGATCTAATTTTTTATTTGATTA‑TCTTAACAAAT‑AAAAAAAAAAAAATACAAAT‑‑‑‑‑‑‑AA‑A‑AATaaaaaaaaaaaaaaaaa                                                                                               >  1:301466/1‑128 (MQ=255)
                                aGGTTAATTAAAATACCATAAACTT‑AATAATTCTTATAATGTAGATCCTCGTGATCTAATTTTTTATTTCTTTA‑TAATCACAAAA‑AAAAAAAAAAAAAT‑‑AAAA‑‑‑‑TAAAA‑A‑AATaaaaaaaaaaaaaaaa                                                                                                >  1:5252876/1‑128 (MQ=255)
                                 ggTTAATTAAAATACCATAAACTT‑AATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑‑‑‑‑TTAAA‑A‑ATTaaaaaaaaaaaaaaaaa                                                                                               >  1:7170968/1‑128 (MQ=255)
                                 ggTTAATTAAAATACCATAAACTT‑AATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAAT‑AAAAAAAAAACAAACC‑‑‑A‑‑‑‑ATAAA‑A‑AATaaaaaaaaaaaaaaaaaa                                                                                              >  2:2918610/1‑128 (MQ=255)
                                 ggTTAATTAAAATACCATAAACTT‑AATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTCTTTA‑TCTTCACAAAT‑AAAAAAAAAAAAATCCC‑‑‑‑‑‑‑ATAAA‑A‑AATtaaaaaaaaaaaaaaaaa                                                                                              >  1:4533512/1‑128 (MQ=255)
                                 ggTTAATTAAAATACCATAAACTT‑AATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTATTTA‑TCTTCACAAAT‑AAAAAAAAAAAAA‑‑ACAAA‑‑‑‑TTAAA‑A‑ATTaaaaaaaaaaaaaaaaa                                                                                               >  2:6739631/1‑128 (MQ=255)
                                    taattaaAATACCATAAACTT‑AATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTTTTTA‑TCTTCACAAAT‑AAAAAAAAAACAATCCCCAT‑‑‑‑Aaaaa‑a‑aaaaaaaaaaaaaaaaaaaaa                                                                                              >  1:5145788/1‑128 (MQ=255)
                                    taattaaAATACCATAAACTT‑AATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑AATTCAAAAAT‑AAAAAAAAAACAAACCCATT‑‑‑‑‑‑‑AA‑A‑AATaaaaaaaaaaaaaaaaaaaaa                                                                                           >  1:7393906/1‑128 (MQ=255)
                                       ttaaAATACCATAAACTT‑AATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAATAAAAAAAAAAACAATCCCC‑‑‑‑‑‑TTAAA‑A‑ATTaaaaaaaaaaaaaaaaaaaaaa                                                                                          >  1:6609185/1‑127 (MQ=255)
                                        taaAAAACAAAAAAATTAAATAATT‑TTAAAATTTTTATCCTCGTTATATTTTTTTTTATTTGTTTT‑TATTCAAAAAA‑AAAAAAAAAACAATCCCC‑‑‑‑‑‑TTAAA‑A‑ATTaaaaaaaaaaaaaaaaaaactaaa                                                                                        <  1:1352927/128‑6 (MQ=255)
                                         aaaaTACCATAAACTT‑AATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAAT‑AAAAAAAAAACAAt                                                                                                                                     <  1:2151169/90‑1 (MQ=255)
                                          aaaTACCATAAACTT‑AATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑‑‑‑‑TTAAA‑A‑ATTaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                      >  1:2330528/1‑123 (MQ=255)
                                          aaaTACCATAAACTT‑AATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑‑‑‑‑TAAAA‑A‑ATTAAAAAAAAAAAAAAAAAAAAAATaaa                                                                                      >  1:7630759/1‑128 (MQ=255)
                                           aaTACCATAAACTT‑AATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAAT‑AAAAAAAAAACAATCACC‑‑‑‑‑‑TTAAA‑A‑ATTAaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                     >  2:6936366/1‑128 (MQ=255)
                                            aTAACATAAAATT‑AAAAAATATTATAATGTATATCATCGTGATCTATTTTTTTATTTTTTTA‑TCTTCAAAAAT‑AAAAAAAAAACAATCCCC‑‑‑‑‑‑TTAAA‑A‑ATTAAAAAAAAAAAAAAAAAAAAACTaaaaa                                                                                    <  2:6238388/128‑1 (MQ=255)
                                              aaaaTAAAATT‑ATTAATTATTATAATGTTTATTCTAGTTTTTTTTTTTTTTTTTTTTTTA‑TTTTAAAAAAT‑AAAAAAAAAAAAAACCCCTT‑‑‑‑‑‑‑AA‑A‑AAT‑TAAAAAAAAAAAAAAAAAAACTAAaaacaaa                                                                                <  1:812856/125‑1 (MQ=255)
                                               ccATAAACTT‑AATAATTCTTATAATGTAGATCCTCGTGATCTATATTTTTAAATGTTTA‑TCTTCACAAAT‑AAAAAAAAAACAAACCCC‑‑‑‑‑‑TTAAA‑A‑ATTAAAAAAAAAAAAAAaaaaaacaaaaaaacac                                                                                 >  1:6737125/1‑127 (MQ=255)
                                               acATAAAAAT‑TATAATTTTTATAAATTATTACATCTTTATTTAATTTTTTATTTTTTTA‑TTTTTAAAAAT‑AAAAAAAAAACAAACCCC‑‑‑‑‑‑TTAAA‑A‑ATTAAAAAAAAAAAAAAAAAAAAACTAAaaacaa                                                                                 <  2:7750944/127‑1 (MQ=255)
                                                     aatt‑attaATTTTTATAATTTTTTTCCTTGTTATTTATTTTTTTATTTTTTTT‑TTTTTAAAAAA‑AAAAAAAAAAAAATCCCC‑T‑‑‑‑TAAAA‑A‑ATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAActct                                                                            <  1:980036/126‑1 (MQ=255)
                                                     aaat‑aataaTTATTTAAATTTATATACATGTTATATATTTTTTTATTTGTTTA‑AATTCAAAAAA‑AAAAAAAAAAAAAAACCC‑‑‑‑‑‑TTAAA‑A‑ATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                           <  2:1826877/125‑1 (MQ=255)
                                                            taatTATAAAAATTTATATCCACTTTATATATTTTTTTTTTTTTTTA‑AAAAAAAAAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑‑‑‑‑AA‑A‑AATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTa                                                                    <  2:5460922/128‑1 (MQ=255)
                                                                tCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑‑‑‑‑TTAAA‑A‑ATTAAAAAAAAAAAAAAAAAAAAACAAAAAACAAACACAATATATTaaaa                                                                 >  1:7671480/1‑128 (MQ=255)
                                                                             atactagTGATTTATTTTTTTATTTTGTTT‑TCTTCAAAAAT‑AAAAAAAAAACAATCCCATT‑‑‑‑‑‑‑AA‑A‑AATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                   <  2:859759/122‑1 (MQ=255)
                                                                              tcatttttatttatttttttattttttTT‑TTTTAAAAAAA‑AAAAAAAAAAAAATTCCCTT‑‑‑‑AAAAA‑ATAAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtattat                                                      <  2:6534841/117‑1 (MQ=255)
                                                                                   tttatatATTTTATTAATATTTTT‑TATTTAAAAAT‑AAAAAAAAAAAAATACCCTT‑‑‑‑‑‑‑AA‑A‑AATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                             <  2:1478976/122‑1 (MQ=255)
                                                                                   gTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑‑‑‑‑AA‑A‑AAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACACTATTTATTAAAATTACCTATTATACAACatttt                                            >  1:6095864/1‑128 (MQ=255)
                                                                                    ttctCTTTTTTTTTATTTGTTTA‑TATTAAAAAAA‑AAAAAAAAAAAAATCCCC‑‑‑‑‑‑TTAAA‑A‑AATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                             <  1:872231/125‑1 (MQ=255)
                                                                                    tgtattatttttttattttttTA‑TAATAAAAAAA‑AAAAAAAAAAAAAACCCC‑T‑‑‑‑TAAAA‑A‑ATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                              <  1:5984946/123‑1 (MQ=255)
                                                                                     tttatatttttttattttttTA‑AATTAAAAAAA‑AAAAAAAAAAAAATACC‑‑A‑‑‑‑TTAAA‑A‑AAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                           <  2:264557/124‑1 (MQ=255)
                                                                                     tttatATTTTTTTAATTTTTTA‑TAATAAAAAAT‑AAAAAAAAAAAAATACCCTT‑‑‑‑‑‑‑AA‑A‑AATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                           <  2:1235505/124‑1 (MQ=255)
                                                                                     tatatatttttttattttttTT‑TATTAAAAAAT‑AAAAAAAAAA‑AATCACCTTAAAAATTAA‑A‑AAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                                 <  2:7109939/124‑1 (MQ=255)
                                                                                     cttttATTTTTTTTTTTTTTTA‑TATAAAAAAAA‑AAAAAAAAAAAAAACCCAAT‑‑‑‑‑‑‑AA‑A‑AAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttat                                          <  1:6389410/124‑1 (MQ=255)
                                                                                          tttttttttttttttTATTATTAAAAAAA‑AAAAAAAAAACAATCCCCTT‑‑‑‑‑‑‑AA‑A‑AATTAAAAAATAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                       <  1:6501832/127‑1 (MQ=255)
                                                                                           ttttttttttttttTA‑TTTTAAAAAAT‑TAAAAAAAAAAAATTAC‑‑A‑‑‑‑TTAAA‑A‑ATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                      <  2:4593821/128‑1 (MQ=255)
                                                                                            ttttttttttttttA‑AATATAAAAAA‑AAAAAAAAAAAAAAACCC‑A‑‑‑‑TTAAA‑A‑AATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                      <  2:6467121/128‑1 (MQ=255)
                                                                                            ttttttattttttta‑tTTTAAAAAAT‑AAAAAAAAAAAAAAACCCAT‑‑‑‑T‑‑AA‑A‑AATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                     <  2:1935571/128‑1 (MQ=255)
                                                                                             ttttttttttttTA‑AATTAAAAAAA‑AAAAAAAAAAAAAAACCC‑‑‑‑‑‑TTAAA‑A‑ATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                    <  1:2706974/128‑1 (MQ=255)
                                                                                              ttttttttttttA‑TTTTTAAAAAT‑AAAAAAAAAAAAATTCCC‑‑‑‑‑‑TTAAT‑A‑ATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                                   <  2:3794508/128‑1 (MQ=255)
                                                                                               tttAATTTTTTA‑TATTCACAAAA‑AAAAAAAAAAAAATTCCCTT‑‑‑‑AAAAATT‑AAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                     <  2:2735731/128‑1 (MQ=255)
                                                                                                ttATTTTTTTA‑TATTAAAAAAT‑AAAAAAAAAAAAATACCC‑‑‑‑‑‑TTAAA‑A‑ATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAAt                                 <  1:5916282/128‑1 (MQ=255)
                                                                                                   ttttttTA‑TATTAAAAAAA‑AAAAAAAAAAAAATACC‑‑A‑‑‑‑ATAAA‑A‑ATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAg                              <  2:4092905/128‑1 (MQ=255)
                                                                                                    ttttttA‑TTTTAAAAAAT‑AAAAAAAAAAAAAACCC‑‑A‑‑‑‑TAAAA‑A‑ATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                             <  2:5986244/125‑1 (MQ=255)
                                                                                                       ttttatataaacaAAT‑AAAAAAAAAAAAAAACCC‑‑‑‑‑‑TTAAA‑A‑ATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                           <  2:3153521/118‑1 (MQ=255)
                                                                                                       ttttataataacaAAT‑AAAAAAAAAAAAAACCCC‑‑‑‑‑‑TTAAA‑A‑AATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                           <  2:7888532/118‑1 (MQ=255)
                                                                                                       ttatatattaaaaaaT‑AAAAAAAAAAAAATAAC‑‑A‑‑‑‑TTAAA‑A‑ATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                           <  2:5153600/116‑1 (MQ=255)
                                                                                                        tttaatataaccaaT‑AAAAAAAAAAAAATACCC‑‑‑‑‑‑TTAAA‑A‑AAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                         <  1:6236655/116‑1 (MQ=255)
                                                                                                         ttaaataaaaaaaa‑aaaaaaaaaaaaATCCCC‑‑‑‑‑‑ATAAA‑A‑ATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                         <  2:5275650/118‑1 (MQ=255)
                                                                                                          tatatttaaaaaT‑AAAAAAAAAACAATCACC‑‑‑‑‑‑ATAAA‑A‑AAT‑AAAATAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGa                       <  1:5525896/119‑1 (MQ=255)
                                                                                                          tatatacaaaaat‑aaaataAAAACAATAACATT‑‑‑‑‑‑‑AA‑T‑AATATAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTGCCTATTATACCACATTTTATTTTTAAAATAAGATATTGa                       <  2:4991128/119‑1 (MQ=255)
                                                                                                                 taaaaT‑AAAAAAAAAAAAAACAC‑‑T‑‑‑‑TTAAA‑A‑TAT‑AAAAATAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataata                <  1:4143593/126‑1 (MQ=255)
                                                                                                                             aaaaaCAATCCCCTT‑‑‑‑‑‑‑AA‑A‑AATTAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAATATATTTATTAAAATTAAATATTATACCACATTTTATTTTTAAAAAAAGAAATTTAAAAAataaatataaaaaa     >  2:7574996/1‑122 (MQ=255)
                                                                                                                                  |                                                                                                                                      
AAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTT‑AATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTA‑TCTTCACAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑‑TTAAA‑A‑AATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATAT  >  CP016816/202350‑202605

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑