BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP016816	203,912	0	G	T	40.6%	1675.8 / inf	1467	intergenic (+296/+162)	JCVSYN2_00845/JCVSYN2_00850	lipoprotein/inorganic diphosphatase
Reads supporting (aligned to +/- strand): ref base G (261/592); new base T (579/4); total (871/596)
Fisher's exact test for biased strand distribution p-value = 0.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 1550 total aligned reads displayed.

AAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTG‑‑‑TTTTTT‑TTTTTTTTTTGTAAAAAT‑AAAAGT‑AAGATTTGGATCAACCAAAACTA‑TA‑T‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTT  >  CP016816/203786‑204039

 aaaaataaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTG‑‑‑TTTTTT‑TTTTTTTTTTGTa                                                                                                                                    >  1:3692498/1‑128 (MQ=255)

      aaaaaatTTTTAATTTAAAGCCAATTTTAAAAAATCCTATTTTCTATGCTTTTTATTATAATTATCAAAATTAAAACGCTTTCAAATTGTA‑TTTTTTT‑GG‑‑C‑TTGT‑‑TTTTTT‑TTTTTTTTTTGTaaaaa                                                                                                                                <  1:7348576/127‑1 (MQ=255)

        aaaatTTTTAATTTAAATCAATATGTAAAAAATCCAATGTTCTTGTCTTTTTTTTATAATTATAAAAATTACAACGCTTTCAAATTTTA‑TTTTTTA‑TG‑‑CTTTT‑‑‑TTTTTT‑TTTTTTTTTTGTAAAAAT‑a                                                                                                                             <  1:759891/128‑1 (MQ=255)

         aaatTTTTAATTTAAAGCCATTTTTTAAAAATCCTATGTTATATGCTTTTTATTTTAATTATTAACATTAAAACGCTTTTAAAGTGTT‑TTTTTTA‑TG‑‑C‑TTGT‑‑TTTTTT‑TTTTTTTTTTGTAAAAAT‑aa                                                                                                                            <  1:6102161/128‑1 (MQ=255)

             ttttactttACAGGCATTTGTAAAAAAGCCCTTGGTCATGGCTTTTTTATATACTTAAAAACATTACAACCCAGTCCAAGGGTA‑ATTTTTT‑GG‑‑C‑TTGT‑‑TTTTTT‑TTTTTTTTTTGTAAAAAT‑AAAAGt                                                                                                                        <  1:343926/122‑1 (MQ=255)

             ttttTATTTAAATCAATTTTTAAAAAATACTATTTTATATGTTTTTTTTTATACTTATCAACATTAAAACTCTTTCAAATTGTA‑TTTTTTA‑GG‑‑C‑TTT‑‑‑TTTTTT‑TTTTTTTTTTGTAAAAAT‑AAAAGT‑a                                                                                                                      <  2:4501658/128‑1 (MQ=255)

             ttttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTGT‑‑TTTTTT‑TTTTTTTTTTTTAAAAAT‑aaaatt                                                                                                                        >  2:7457282/1‑126 (MQ=255)

             ttttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTGT‑‑TTTTTT‑TTTTTTTTTTGTAAAAAT‑AAAAGt                                                                                                                        >  2:1735076/1‑128 (MQ=255)

             ttttAATTATAAGCCATTTGTTAAAAAGCCTATGTGCTAGGCTTTTTTTTATACTTATCAACATTACAACGCTTTCAAATGGTT‑TTTTTTA‑GG‑‑C‑TTGT‑‑TTTTTT‑TTTTTTTTTTGTAAAAAT‑AAAAGt                                                                                                                        <  2:3991238/128‑1 (MQ=255)

                     tAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTG‑‑‑TTTTTT‑TGTTTTTTTTTTAATAAT‑ACAAAT‑AATATTTgg                                                                                                              >  2:382772/1‑128 (MQ=255)

                       aattatttttTAAAAAAGACTATGTTATATGATTTTTTTTTTAATTATAAAAATTTAAACGATTTATAATTGTA‑TTTTTTT‑GG‑‑C‑TTT‑‑‑TTTTTT‑TTTTTTTTTTGTAAAAAT‑AAAAGT‑AAGATTTGGAt                                                                                                            <  2:5432231/122‑1 (MQ=255)

                       aaGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTG‑‑‑TTTTTT‑TTTTTTTTTTTTAAAAAT‑AAAATT‑AATATTTTGAt                                                                                                            >  1:6418044/1‑128 (MQ=255)

                               tGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTG‑‑‑‑‑‑‑TT‑TTTTTTTTTTGTAAAAAT‑AAAAGT‑AAGATTTGGATCAACCAAAACta                                                                                                <  2:6213263/128‑1 (MQ=255)

                                 tAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTG‑‑‑TTTTTT‑TTTTTTTTTTGTAAAAAT‑AAAAGA‑AAAATTAGTATCAAcctcaac                                                                                                  >  2:7191155/1‑123 (MQ=255)

                                       aGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTGTTTTTTTTT‑TTTTTTTTTTTTAAAAAT‑AAAATT‑AATATTTGTATAAACCaaaaaaat                                                                                               >  1:6343086/1‑124 (MQ=255)

                                        gcctagaacatAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTGTT‑TTTTTT‑TTTTTTTTTTGTAAAAAT‑AAAATT‑ATGATTTGGATCAACAAAAAata‑ta‑t                                                                                           >  2:6065041/11‑128 (MQ=255)

                                        gCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTGT‑‑TTTTTT‑TTTTTTTTTTTTTAAAAT‑TAAATT‑TATATTTGGATAAAACaaatattatta                                                                                            >  1:2212122/1‑120 (MQ=255)

                                        gCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTGT‑‑TTTTTT‑TTTTTTTTTTTTAAAAAT‑AAAATT‑AATTTTTGGTAAAACAAAAACttataa                                                                                            >  1:4373714/1‑123 (MQ=255)

                                          cTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTGTT‑TTTTTT‑TTTTTTTTTTGTAAAAAT‑TAAATT‑TATATTTGGTTCCACCAAAAATA‑TA‑A‑Ca                                                                                        >  1:6974947/1‑128 (MQ=255)

                                          cTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTGT‑‑TTTTTT‑TTTTTTTTTTTTTAAAAT‑AAAAATAAAAATTTGGAAAAACAAAAAAtaaaaaa                                                                                           >  2:4738193/1‑123 (MQ=255)

                                           tttttttttttttttttATTATTATTATAAAAATTAAAAATATTTAAAATTTTT‑TTTTTTA‑TG‑‑C‑TTGT‑‑TTTTTT‑TTTTTTTTTTGTAAAAAT‑AAAAGT‑AAGATTTGGATCAACCAAAACTA‑TA‑T‑Caaa                                                                                      <  2:574298/116‑1 (MQ=255)

                                           tATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTGT‑‑TTTTTT‑TTTTTTTTTTTTAAAAAT‑AAAAGT‑AAGATTTTGATAAACAAAAAATT‑TA‑T‑Caaa                                                                                      >  2:1814161/1‑128 (MQ=255)

                                            aTGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTG‑‑‑TTTTTT‑TTTTTTTTTTGTAAAAAT‑AAAAGT‑AATATTTGGATAAACCAAAACTA‑TA‑T‑aaaaaa                                                                                    >  2:1989509/1‑128 (MQ=255)

                                             gaacatAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTGGT‑TTTTTT‑TTTTTTTTTTGTAAAATT‑AAAAGT‑AATATTTGGATCAACCAAAACTA‑TA‑T‑Caaaa                                                                                     >  2:3727057/6‑128 (MQ=255)

                                               ttCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTGT‑‑TTTTTT‑TTTTTTTTTTTTAAAAAT‑AAAAGT‑ATATTTTGTATAAACAAAAATTT‑TA‑T‑Aaaaaaat                                                                                  >  2:2174521/1‑127 (MQ=255)

                                               acatAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTGT‑‑TTTTTT‑TTTTTTTTTTTTAAAAAA‑AAAATT‑AATATTTGGATCAACCAAAAATT‑TA‑T‑aaaaaata                                                                                  >  2:1083106/4‑126 (MQ=255)

                                               acatAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTG‑‑‑TTTTTT‑TTTTTTTTTTTTTAAAAT‑AAAAAT‑AAGATTTGGATAAACAAAAACTT‑AA‑T‑CTAAAAAAt                                                                                 >  1:1617632/4‑128 (MQ=255)

                                                tCTAGTCTTTTTATTATACTTATAAAAATTACAATGCTTTCATAGTGTT‑TTTTTTA‑GG‑‑C‑TTG‑‑‑‑TTTTT‑TTTTTTTTTTGTAAAAAT‑AAAAGT‑AAGATTTGGATCAACCAAAACTA‑TA‑T‑CAAAAAAATTa                                                                               <  1:6262973/128‑1 (MQ=255)

                                                tCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTGT‑‑TTTTTT‑TTTTTTTTTTTTAAAAAA‑AAAAGT‑AAGATTTGGATCAACCAAAAATA‑TA‑A‑CAAAAAAAt                                                                                 >  2:5848394/1‑128 (MQ=255)

                                                catAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTGT‑‑TTTTTT‑TTTTTTTTTTATAAAAAT‑AAAAGT‑AATATTTGTATAAACAAAAAATA‑‑A‑T‑aaaaaaaaaa                                                                                >  2:268346/3‑126 (MQ=255)

                                                 cTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTGT‑‑TTTTTT‑TTTTTTTTTTGTAAAAAT‑AAAAGT‑AAGATTTGGATCAACCAAAACTA‑TA‑T‑CAAAAAAAtt                                                                                >  2:5975526/1‑128 (MQ=255)

                                                  tAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTGT‑‑TTTTTT‑TTTTTTTTTTGTAAAAAT‑AAAAGG‑TAGATTTGGGTGCCCCAAAACTA‑TT‑A‑Caaaatatata                                                                               >  2:508819/1‑122 (MQ=255)

                                                   tttttttttATTTTATTTATAAAAATTTAAATTTTTTAAATTTGTT‑TTTTTTT‑GGT‑T‑TTT‑‑‑TTTTTT‑TTTTTTTTTTGTAAAAAT‑AAAAGT‑AAGATTTGGATCAACCAAAACTA‑TA‑T‑CAAAAAAATTaa                                                                              <  1:2951422/124‑1 (MQ=255)

                                                   aGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTGTTTTTTTTT‑TTTTTTTTTTTTAAAAAA‑AAAATT‑AATATTTTGATAAACAAAAAATA‑TT‑T‑AAAAAAAAtt                                                                                >  2:3230055/1‑128 (MQ=255)

                                                   aGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTGTT‑TTTTTT‑TTTTTTTTTTTTAAAAAT‑AAAATT‑AATATTTGTAAAAAAAAAAAATA‑T‑‑T‑AAAAAAAATTaa                                                                              >  2:6276879/1‑128 (MQ=255)

                                                   aGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTG‑‑‑TTTTTT‑TTTTTTTTTTTTTAAAATAAAAATT‑AAATTTTTGATAAACCAAAAATA‑TA‑T‑AAAAAAAATTaa                                                                              >  1:6868716/1‑128 (MQ=255)

                                                    ggCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTGT‑‑TTTTTT‑TTTTTTTTTTTTAAAAAT‑AAAATT‑AATATTTGGATACACCAAAAATA‑TT‑T‑CAAAAAAATTaaa                                                                             >  1:2739583/1‑128 (MQ=255)

                                                    ggCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTG‑‑‑TTTTTT‑TTTTTTTTTTTTAAAAAT‑AAAATT‑AATATTTGGATAAAACAAAAAAA‑AA‑T‑AAAAAAAATTaaaa                                                                            >  2:5221887/1‑128 (MQ=255)

                                                      cTTTTTATTATAATTATTAACATTACAAAGCTTTCAAAGTGTT‑TTTTTTT‑TG‑‑C‑TTT‑‑‑TTTTTT‑TTTTTTTTTTGTAAAAAT‑AAAAGT‑AAGATTTGGATCAACCAAAACTA‑TA‑T‑CAAAAAAATTaaaaaa                                                                          <  1:1780465/128‑1 (MQ=255)

                                                      atttttATAATAATTATCAAAATTACAACCCTTTAAAATTGTATTTTTTTT‑GA‑‑T‑TTT‑‑‑TTTTTT‑TTTTTTTTTTGTAAAAAT‑AAAAGT‑AAGATTTGGATCAACCAAAACTA‑TA‑T‑CAAAAAAATTaaaaa                                                                           <  1:6203257/127‑1 (MQ=255)

                                                        ttttttTATAATTATCAAAATATCAACGATTTTAAATTGTA‑TTTTTTT‑TGTTT‑TTT‑‑‑TTTTTT‑TTTTTTTTTTGTAAAAAT‑AAAAGT‑AAGATTTGGATCAACCAAAACTA‑TA‑T‑CAAAAAAATTaaaaaa                                                                          <  1:1904900/128‑1 (MQ=255)

                                                        ttttATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTGT‑‑TTTTTT‑TTTTTTTTTTTTAAAAAT‑AAAATT‑AATTTTTTTATGATCCAAAAATA‑TT‑T‑AAAAAAAATTtaaaaaa                                                                         >  2:7561955/1‑128 (MQ=255)

                                                        ttttATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTG‑‑‑TTTTTTATTTTTTTTTTTTAAAAAT‑AAAATT‑AATTTTTGTATCACCCAAAAC‑A‑Ta‑t‑aaaaaaaaataaaaaaaa                                                                        >  2:7834562/1‑128 (MQ=255)

                                                         tttATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTGT‑‑TTTTTT‑TTTTTTTTTTTTAAAAAT‑AAAATT‑AAAATTTGGATAAAACAAAAAAA‑TA‑T‑CAAAAAAATTaaaaaaaa                                                                        >  1:4619558/1‑128 (MQ=255)

                                                               atattttttaaaaTTACAAATGTTTTAAATTGTA‑TTTTTTT‑GG‑‑C‑TTGT‑‑TTTTTT‑TTTTTTTTTTGTAAAAAT‑AAAAGT‑AAGATTTGGATCAACCAAAACTA‑TA‑T‑CAAAAAAATTAAAAAAAAtagttt                                                                  <  1:6787906/116‑1 (MQ=255)

                                                               ataCTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTGT‑‑TTTTTT‑TTTTTTTTTTTTAAAAAT‑AAAATT‑AATATTTTGATAAACCAAAAATA‑TA‑T‑AAAAAAAATTAAAAAAAAtatttt                                                                  >  2:142973/1‑128 (MQ=255)

                                                               ataCTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTGT‑‑TTTTTT‑TTTTTTTTTTGTAAAAAT‑AAATAT‑ATAATTTGTTTCAA‑CAAAACTATTA‑A‑AAAAAAAATTAAAAAAAAtagtta                                                                  >  2:3454750/1‑127 (MQ=255)

                                                               ataCTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTG‑‑‑‑‑‑TTT‑TTTTTTTTTTGTAAAAAT‑AAAAGT‑AAGATTTGGATCAACCAAAACTA‑TA‑T‑CAAAAAAATTAAAAAAAAtagtttagtt                                                              <  1:6607386/128‑1 (MQ=255)

                                                                taCTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTG‑‑‑TTTTTT‑TTTTTTTTTTTTAAAAAA‑AAAATT‑AATATTTTGAGAAACCAAAAAAA‑TA‑T‑AAAAAAAATTAAAAAAAAtaatttat                                                                >  2:2363886/1‑127 (MQ=255)

                                                                atattttctaaaTTACAAATCTTTTAAAGTGTT‑TTTTTTT‑GT‑‑T‑TTGT‑‑TTTTTT‑TTTTTTTTTTGTAAAAAT‑AAAAGT‑AAGATTTGGATCAACCAAAACTA‑TA‑T‑CAAAAAAATTAAAAAAAAtagttta                                                                 <  1:4052654/117‑1 (MQ=255)

                                                                 aCTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTGTT‑TTTTTT‑TTTTTTTTTTTTAAAAAT‑AAAATT‑AAGATTTGGATAAACCAAAAATA‑TA‑T‑AAAAAAAATTAAAAAAAAaagttta                                                                 >  2:3575686/1‑128 (MQ=255)

                                                                   ttATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTGTT‑TTTTTT‑TTTTTTTTTTTTAAAAAT‑AAAATT‑AAGATTTTGTTAAACCAAAAATT‑TT‑A‑AAAAAAAATTTAAAAAAAtattttatt                                                               >  2:2525564/1‑126 (MQ=255)

                                                                   ttATAAAAATTACAACGGTTTATAAGTTTT‑TATTTTATTG‑‑T‑TTT‑‑‑TTTTTT‑TTTTTTTTTTGTAAAAAT‑AAAAGT‑AAGATTTGGATCAACCAAAACTA‑TA‑T‑CAAAAAAATTAAAAAAAAtagtttagtt                                                              <  1:3148632/128‑1 (MQ=255)

                                                                      tCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTGTT‑TTTTTT‑TTTTTTTTTTTTAAAAAT‑AAAATT‑AAGATTTTGATAAACCAAAAATA‑TT‑A‑AAAAAAAATTAAAAAAAAtattttttttta                                                            >  2:2889387/1‑122 (MQ=255)

                                                                      tCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTGTT‑TTTTTT‑TTTTTTTTTTTTAAAAAT‑AAAATT‑AA‑ATTTTTGTAAAACAAAAAAT‑TA‑TAAAAAAAAATTAAAAAAAAaattttatttta                                                            >  2:658723/1‑126 (MQ=255)

                                                                      tCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTGT‑‑TTTTTT‑TTTTTTTTTTTTAAAAAT‑AAAAGT‑AAGATTTGGATAAACCAAAACTT‑TA‑T‑AAAAAAAATTAAAAAAAAtattttattttat                                                           >  2:7050342/1‑125 (MQ=255)

                                                                      tCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTG‑‑‑GTTTTT‑TTTTTTTTTTGTAAAAAT‑AAATAT‑ATGATATGGATAAAAAAAAACTA‑TA‑A‑AAAAATAATTTAAAAAAATATTTTATTTGatg                                                          >  1:5109621/1‑126 (MQ=255)

                                                                          cATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTG‑‑‑TTTTTT‑TTTTTTTTTTTTAAAAAT‑AAAATT‑AATATTTGGTTCAACCAAAAATT‑TA‑T‑AAAAAAAATTTAAAAAATtattttttgtttgtttaa                                                      >  1:5281282/1‑116 (MQ=255)

                                                                             tACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTGTT‑TTTTTT‑TTTTTTTTTTGTAAAAAT‑AAAAGT‑AAGATTTGGTTCAACCAAAACTA‑TT‑T‑AAAAAAAATTAAAAAAAATATTTttgttgcttttaaa                                                     >  2:6434122/1‑120 (MQ=255)

                                                                               cAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTGT‑‑TTTTTT‑TTTTTTTTTTTTAAAAAA‑AAAATT‑AAGATTTGTATAAACCAAAACAA‑AA‑A‑AAAAAAAAATAAAAAAAATATTTTATTTGATTTTaaaaac                                                  >  1:6527878/1‑126 (MQ=255)

                                                                                 attgtttttaattgtT‑TTTTTTT‑GG‑‑G‑TTT‑‑‑TTTTTT‑TTTTTTTTTTGTAAAAAT‑AAAAGT‑AAGATTTGGATCAAACAAAACTA‑TA‑T‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGc                                               <  1:7444634/116‑1 (MQ=255)

                                                                                 aCGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTGT‑‑TTTTTT‑TTTTTTTTTTTTAAAAAT‑AAAATT‑AATATTTTGATAAACCAAAAATT‑TA‑T‑AAAAAAAATTAAAAAAAATTTTTTATTTTAGTTTAAAAtagg                                                >  2:7946615/1‑125 (MQ=255)

                                                                                 aCGCTATCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTG‑‑‑TTTTTT‑TTTTTTTTT‑‑TAAAAAT‑AAAATT‑AATATTTGGTTCAAACAAAAAAA‑TA‑T‑AAAAAAAATTAAAAAAAATATTATAGTTTAGTTTaaaaaatacat                                             >  2:6684923/1‑121 (MQ=255)

                                                                                  cGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTGT‑‑TTTTTT‑TTTTTTTTTTGTAAAAAT‑AAAATT‑AATATTTGGATAAACCAAAAATA‑TA‑A‑AAAAAAAATTAAAAAAAAAATTTTAGTTTAGTTTAAAAtaaga                                               >  2:6360953/1‑124 (MQ=255)

                                                                                   gCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTG‑‑‑TTTTTT‑TTTTTTTTTTTTAAAAAT‑AAAATT‑AATATTTTGAAAAAACAAAAATA‑TA‑T‑AAAAAAAATTAAAAAAAAAATTTTTTTTTAGttaaaaaattgaat                                             >  2:1616851/1‑116 (MQ=255)

                                                                                     tttCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTGT‑‑TTTTTT‑TTTTTTTTTTTTAAAAAA‑AAAAGT‑AATATTTTTATGAAACAAAAATA‑TA‑T‑AAAAAAAATTAAAAAAAATATTTTATTTTATTTTAAAAAATGCaat                                            >  2:3035869/1‑126 (MQ=255)

                                                                                       tCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTGT‑‑TTTTTT‑TTTTTTTTTTTTAAAAAT‑AAAAAT‑AAGATTTGGATAAACCAAAAATA‑TA‑T‑AAAAAAAATTAAAAAAAATAATTTATTTTATTTTAAAATATGAatata                                          >  2:4615306/1‑128 (MQ=255)

                                                                                        cAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTGT‑‑TTTTTT‑TTTTTTTTTTTTAAAAAA‑AAAATT‑AAAAATTTTATAAAACAAAAAAA‑AT‑T‑AAAAAAAATTAAAAAAAAAATTTTAATTGATTTTaaaaaataaaaataa                                         >  2:7744936/1‑117 (MQ=255)

                                                                                        cAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTG‑‑‑TTTTTT‑TTTTTTTTTTTTAAAAAA‑AAAATT‑AAAATTTGTATAAAACAAAA‑AA‑TATT‑AAAAAAAATTAAAAAAAATATTTTATTTTAATTTAAAAAAAGCatataaa                                        >  2:4363696/1‑126 (MQ=255)

                                                                                          aaGTGTA‑TTTTTTA‑GG‑‑C‑TTGT‑‑TTTTTT‑TTTTTTTTTTGTAAAAAT‑AAAATT‑AAGATTTGGATCAACCAAAACTA‑AA‑T‑CAAAAAAATTAAAAAAAATAGTTTATTTTATTTTAAAATCTTCATATATAg                                       >  2:6127706/1‑128 (MQ=255)

                                                                                             tgtA‑TTTTTTA‑GG‑‑C‑TTGT‑‑TTTTTT‑TTTTTTTTTTTTAAAAAT‑AAAAAT‑AATATTTTTATAAACCAAAAAAA‑AA‑A‑AAAAAAAATAAAAAAAAAAAATTTAGTTTAGTTTAAAAAATGAATATATATTaa                                    >  1:5820696/1‑127 (MQ=255)

                                                                                             tgtA‑TTTTTTA‑GG‑‑C‑TTG‑‑‑TTTTTT‑TTTTTTTTTT‑TAAAAAT‑AAAATT‑AAGATTTGGTTCAACAAAAACTA‑AA‑A‑AAAAAAAATTAAAAAAAATAATTTATGTGAGATAAAAAAATGCatattaattaaaa                                  >  1:4916276/1‑119 (MQ=255)

                                                                                              gtA‑TTTTTTA‑GG‑‑C‑TTGTT‑TTTTTT‑TTTTTTTTTTTTAAAAAA‑AAAAGT‑AAAATTTGGATCAAAAAAAACTA‑AA‑T‑AAAAAAAATTAAAAAAAATATTTTATTTGATTTTAAAAAATGCaataatataac                                    >  2:4104259/1‑118 (MQ=255)

                                                                                                    ttttA‑GG‑‑C‑TTGT‑‑TTTTTT‑TTTTTTTTTTGTAAAAAT‑AAAAGT‑AAGATTTGGATCAACCAAAAATA‑TA‑T‑CAAAAAAATTTAAAAAAATTTTTTAGTTGAGTTTCAAATCTGCAAATATAGTACAAAgta                              >  2:923841/1‑126 (MQ=255)

                                                                                                      ttA‑GG‑‑T‑TTG‑‑‑TTTTTT‑TTTTTTTTTTGTAAAAAT‑AAAAGT‑AAGATTTGGATCAACCAAAACTA‑TA‑T‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAtt                           <  1:6700642/128‑1 (MQ=255)

                                                                                                      ttA‑GG‑‑C‑TTGT‑‑TTTTTT‑TTTTTTTTTTTTAAAAAT‑AAAAGT‑AAGATTTGGATAAACCAAAAATA‑TA‑T‑AAAAAAAATTAAAAAAAATAGTTTTGTTGAGTTTCAAATATGCATATAAATTACAAAGGAAt                            >  2:6491035/1‑128 (MQ=255)

                                                                                                      ttA‑GG‑‑C‑TTG‑‑‑TTTTTT‑TTTTTTTTTTTTAAAAAT‑AAAAGT‑AAGATTTGGATCAACCAAAAAAA‑TA‑T‑CAAAAAAATTAAAAAAAAAATTTTATTTGAGTTTCAAATCTGCATAAATAGAACATATGAAtt                           >  1:7217225/1‑128 (MQ=255)

                                                                                                            tttatttttttttttt‑ttttttttttGTAATAAT‑ATAAGT‑AAGATTTGTTTAAAAAAAAACTA‑TA‑T‑AAAAAAAATTAAAAAAATTAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAt                            <  2:4211240/118‑1 (MQ=255)

                                                                                                              tttttttttttttt‑ttttttttttGTAATAAT‑AAAAGT‑AAGATTTGTATAAAACAAAAATA‑TA‑T‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAttt                          <  2:2796985/120‑1 (MQ=255)

                                                                                                              tttttttttttttt‑ttttttttttGTAAAAAT‑AATAGT‑ATGATTTGGATAAATAAAAACTA‑TA‑T‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAttt                          <  2:4925143/120‑1 (MQ=255)

                                                                                                              tatttttttttttt‑ttttttttttGTAAAAAT‑AAAAGT‑AAGATTTGGATAAAACAAAACTA‑TA‑T‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAttt                          <  2:731030/120‑1 (MQ=255)

                                                                                                               ttttttttttttt‑ttttttttttGTAAAAAT‑AAAAGT‑AAGATTTGGATCAACAAATACTA‑TA‑T‑AAATAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTa                         <  2:1270189/121‑1 (MQ=255)

                                                                                                               gtttttttttttt‑ttttttttttGTAAATAT‑AATAGT‑AAGATTTGGATCAAACATAATTA‑TA‑T‑AAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTa                         <  1:4235409/121‑1 (MQ=255)

                                                                                                                ttgttttttttt‑ttttttttttGTAAAAAT‑AAAAGT‑AAGATTTTGATCAACAAAAACTT‑TA‑T‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTAt                        <  1:3920642/122‑1 (MQ=255)

                                                                                                                 ttttttttttt‑ttttttttttGTAAAAAT‑AAAATT‑AAGATTTGGATCAACCAAAACTA‑TA‑T‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATg                       <  1:1352703/123‑1 (MQ=255)

                                                                                                                   ttttttttt‑ttttttttttttATAATT‑AAAATT‑AATATTTTTATTAAATAAAAATA‑TA‑T‑AAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTTAAATATGCATATATAGTACAAAGGAATTTATGAt                     <  1:1021409/125‑1 (MQ=255)

                                                                                                                     ttttttt‑ttttttttttttAAAAAT‑AAAATT‑AAGATTTGGATAAACCAAAAATT‑TT‑T‑AAAAAAAATTAAAAAAAATAGTTTATTTTAATTTCAAATGGGAATATATATTTAAAAGGAATTAATGATat                   >  2:7620160/2‑127 (MQ=255)

                                                                                                                      tttttt‑ttttttttttttAAAAAT‑AAAAGT‑AAGATTTGGATCAACCAAAACTA‑TA‑T‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGa                  <  1:7685757/128‑1 (MQ=255)

                                                                                                                       ttttt‑ttttttttttGTAAAATT‑AAAAGT‑AAGATTTGGATCAACAAAAACTA‑TA‑T‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaa                 <  1:2507157/128‑1 (MQ=255)

                                                                                                                          tt‑ttttttttttGTAAAAAT‑AAAAGT‑AAGATTTGTATCAACCAAAACTA‑TA‑T‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaa              <  1:551395/128‑1 (MQ=255)

                                                                                                                          tt‑ttttttttttGTAAAAAT‑AAAAGT‑AAGATTTGGATCAACCAAAACTA‑TA‑T‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaa              <  1:5975526/128‑1 (MQ=255)

                                                                                                                          tt‑ttttttttttGTAAAAAT‑AAAAGT‑AAGATTTGGAGCACCCAAAACTA‑AT‑A‑CAAAAAAATTAAAAAAAATTTTTTATTTGATTTTAAAATCTGCATAAAAAGAAAAAAGCAATTTATGAaaaaaaaa              >  2:559999/1‑128 (MQ=255)

                                                                                                                           t‑ttttttttttGTAAAAAT‑TAAAGT‑AAGATTTGGATCAAACAAAACTA‑TA‑T‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaaa             <  1:2036070/128‑1 (MQ=255)

                                                                                                                             ttttttttttGTAAAAAT‑AAAAGT‑AAGATTTGGAACAACCAAAACTA‑TA‑T‑AAAAAAAATTAAAAAAAAAATTTTATTTGATTTTCAAATATGCAAATATAGTACAAAGGAATTTTTTATAaaaaaaaa            >  1:922072/1‑128 (MQ=255)

                                                                                                                               tttattttGTAAAAAT‑AAAAGT‑TAGATTTGGATCAACGAAAACTA‑TA‑T‑CAAAATAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATg          <  1:2362210/128‑1 (MQ=255)

                                                                                                                                   ttttttAAAAAT‑AAAATT‑AATTTTTGGTTCAAACAAAAATT‑TA‑T‑AAAAAAAATTAAAAAAAATATTTTTTTTTTTTTTAAAATATTCATATATATTAAAAAGAAATTTATTATAGAAAAAAAtttatt      >  2:6783650/1‑123 (MQ=255)

                                                                                                                                     ttGTAAAAAT‑AAAAGT‑ATGATTTGGAACAACCAAAACTA‑TA‑T‑CAAAAAAATTAAAAAAAATAGTTTAGTGGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAg    <  1:7132287/128‑1 (MQ=255)

                                                                                                                                     ttGTAAAAAT‑AAAAGT‑AAGATTTGGATCAACCAAAACTA‑TA‑T‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAg    <  1:7813203/128‑1 (MQ=255)

                                                                                                                                     ttGTAAAAAT‑AAAAGT‑AAGATTTGGATCAAACAAAACTA‑TA‑T‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAg    <  2:6887610/128‑1 (MQ=255)

                                                                                                                                       gTAAAAAT‑AAAAGT‑AAGATTTGGATCAACCAAAACTA‑TA‑T‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGtt  <  1:7934286/128‑1 (MQ=255)

AAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTG‑‑‑TTTTTT‑TTTTTTTTTTGTAAAAAT‑AAAAGT‑AAGATTTGGATCAACCAAAACTA‑TA‑T‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTT  >  CP016816/203786‑204039

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`