BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP016816	420,253	0	C	A	43.5%	1331.1 / inf	1493	intergenic (‑536/+307)	JCVSYN2_01895/JCVSYN2_01900	30S ribosomal protein S10/tRNA‑Thr
Reads supporting (aligned to +/- strand): ref base C (273/539); new base A (526/100); total (803/690)
Fisher's exact test for biased strand distribution p-value = 0.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 1530 total aligned reads displayed.

AGAAAACTACTAGCACTTTTTTAAAAAATTTAAAATTAAAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑TGCT‑C‑G‑‑TTTTTTTTT‑TTTTTTTT‑ACAAAAATAT‑AATTTATTTGATTAAACGTA‑TATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTT  >  CP016816/420126‑420378

   aaaCTAATATTAATTTTTTAAAAAATTTTTAATTTTAATAAATTTATTATTTTTAAAATTTTTAAATTATTTTAAAATAATTATATATTAATAAATTTTT‑TGCT‑C‑G‑‑TTTTTTTTT‑TTTTTTTT‑ACaaa                                                                                                                              <  1:1320522/128‑1 (MQ=255)

      ctaataGCACTTTTTTAAAAAATTTTTAAATTTAATAAATTAATTATTTTTCAAATTGTTAAATTATTTTAAAATCAATATCAATTAAACAATTTTA‑TGCT‑C‑G‑‑‑TTTTTTTT‑TTTTTTTT‑ACAAAAata                                                                                                                          <  2:1304141/128‑1 (MQ=255)

         ctaGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑TGCT‑C‑G‑‑TTTTTTTTT‑TTTTTTTT‑TAAAAAattat                                                                                                                        >  1:3015942/1‑125 (MQ=255)

         ctaGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑TGCT‑C‑G‑‑TTTTTTTTT‑TTTTTTTT‑ACAAAAAtat‑a                                                                                                                       >  1:508222/1‑128 (MQ=255)

          tttaccTTTTTTAAAAAAATTTTAATTTTAATAAATTAAATTTTTTTAAAATTGTTAAATTATTTTAAAATCAATAACAAATAAAAAATTTTA‑TTCG‑C‑G‑‑TTTTTTTTT‑TTTTTTTT‑ACAAAAATAT‑aa                                                                                                                      <  2:4094038/123‑1 (MQ=255)

          tttaatttttttAAAAAATTTTTTATTTTTAAATGTGAATTTTTTTTTTATTTGTTAATTTATTTTATAATCATTTTTTTTTAATAAATTTTT‑TGTT‑G‑G‑‑TTTTTTTTT‑TTTTTTTT‑ACAAAAATAT‑aa                                                                                                                      <  1:2336497/122‑1 (MQ=255)

          tataaCTTTTTTAAAATATTTTTTATTTTTATAAATTTATTTTTTTTAAAATTTTTAAATTATTTTTAAATAATTATATATTAATAAATTTTA‑TTCT‑C‑T‑‑TTTTTTTTT‑TTTTTTTT‑ACAAAAATAT‑aa                                                                                                                      <  1:3580696/124‑1 (MQ=255)

           attaattttttTAAAAATTTTTTATTTTAATAAATTTATTATTTTTTAAATTTTTTAATTATTTTTAAATTATTATTTATTAATTAATTTTA‑TGTT‑T‑G‑‑TTTTTTTTT‑TTTTTTTT‑ACAAAAATAT‑Aat                                                                                                                     <  1:225820/123‑1 (MQ=255)

           aGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑TGCT‑C‑G‑‑TTTTTTTTTATTTTTTTT‑AAAAAAAAAT‑aa                                                                                                                      >  2:362920/1‑128 (MQ=255)

           aGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑TGCT‑C‑G‑‑TTTTTTTTT‑TTTTTTTT‑AAAAAAATAT‑Aat                                                                                                                     >  2:1631036/1‑128 (MQ=255)

           aGCAATTTTTTAAAAAATTTTTAATTTTAATAAATTAATTATTTTTTAAATTTTTTAATTATTTTAAAATAAATATATATTAATAAATTTTA‑TTCT‑C‑GT‑TTTTTTTTT‑TTTTTTTT‑ACAAAAATAT‑aa                                                                                                                      <  2:4267665/128‑1 (MQ=255)

            taaattttatAAAAAATTTTTAATTTTAATAAATTATTTATTTTTTAAATTTTATTATTATTTTAAAATAATTTTATATTAATAAATTTTA‑TTCT‑CTT‑‑TTTTTTTTT‑TTTTTTTT‑ACAAAAATAT‑Aat                                                                                                                     <  2:3288808/124‑1 (MQ=255)

            gCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑TGCT‑C‑G‑‑TTTTTTTTT‑TTTTTTTA‑AAAAAAATAT‑Aatt                                                                                                                    >  2:903301/1‑128 (MQ=255)

            gCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑TGCT‑C‑G‑‑TTTTTTTTT‑TTTTTTAC‑A‑AAAAATA‑‑Aattta                                                                                                                  >  1:4526568/1‑128 (MQ=255)

             cACTTTTTTAAAAAATTTTTAATTTTAATAACAGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑TGCT‑C‑G‑‑TTTTTTTTT‑TTTTTTTT‑AACAAAAaat‑atcgg                                                                                                                   >  2:4489739/1‑124 (MQ=255)

              aCTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATAATCTATTAATCAATTTTA‑TGCT‑C‑G‑‑TTTTTTTTT‑TTTTTTTT‑AAAAAAAAAA‑Aattaa                                                                                                                  >  1:3704873/1‑126 (MQ=255)

                ttttttTAAAAATTTTTAATTTTAATAAATTTATTTTTTTTAAAATTTTTATAATTTTTTAAAATTATTATTTATTTATATATTTTT‑TTTT‑G‑GT‑TTTTTTTTT‑TTTTTTTT‑ACAAAAATAT‑Aatttat                                                                                                                 <  1:4192260/128‑1 (MQ=255)

                ttttttAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑TGCT‑C‑G‑‑TTTTTTTTT‑TTTTTTTTAACAAAAATAT‑Aatttat                                                                                                                 >  1:3766126/1‑128 (MQ=255)

                 tttttAAAGAATTTTTAATTTTAATAACTGATTTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑TTCT‑C‑G‑‑TTTTTTTTT‑TTTTTTTA‑AAAAAAAAAA‑Aatttattt                                                                                                               >  2:2311319/1‑128 (MQ=255)

                  ttttAAAATATTTTTTATTTTAATAAATTTATTTTTTTTTAAATTTTTAAATTTTTTTAAAATAATTAAATAATAATAAATTTTT‑TTTTAT‑T‑‑TTTTTTTTT‑TTTTTTTT‑ACAAAAATAT‑Aatttattt                                                                                                               <  2:237511/128‑1 (MQ=255)

                    tttaaaaaTTTTTAATTTTAATAAATTTATTTTTTTTTAAATTTTTAAATTATTTTTAAATTATTTTTTATTTATTAATTTTT‑TTAT‑‑‑T‑‑TTTTTTTTT‑TTTTTTTT‑ACAAAAATAT‑AATTTATTTGAtt                                                                                                           <  1:2802653/125‑1 (MQ=255)

                     tAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑TGCT‑C‑G‑‑TTTTTTTTT‑TTTTTTTT‑TAAAAAATATAAATTTATTTAAt                                                                                                            >  1:3935140/1‑128 (MQ=255)

                        aaaaTTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑TGCT‑C‑G‑‑TTTTTTTTT‑TTTTTTTT‑ACAAAAATAT‑AATTTATTTAATTaaa                                                                                                        >  2:2562056/1‑128 (MQ=255)

                          aaTTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑TGCT‑C‑GT‑TTTTTTTTT‑TTTTTTTT‑AAAAAAATAT‑AATTTTTTTTATTaaaa                                                                                                       >  1:885540/1‑127 (MQ=255)

                             ttttaattttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑TGCT‑C‑G‑‑TTTTTTTTT‑TTTTTTTT‑AAAAAAATAT‑AATTTATTTTATTAAACTta‑t                                                                                                  >  2:3192317/11‑128 (MQ=255)

                                taattttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑TGCT‑C‑G‑‑TTTTTTTTT‑TTTTTTTT‑AAAAAAATAT‑AATTAATATTATTAAACTTA‑TAtt                                                                                               >  2:3360962/8‑128 (MQ=255)

                                   attttaatatataaTTTTTTTTTAAATTTTTTAATTTTTTTTAATTTATTTTATATTTATAAATTTTT‑TTGT‑T‑GTTTTTTTTTTT‑TTTTTTTT‑ACAAAAATAT‑AATTTATTTGATTAAACGTA‑TAttt                                                                                              <  1:3641505/116‑1 (MQ=255)

                                    tttaaataCTTAATTATTTTTAAAATTGTTAAATTATTTTAAAATAATTATCTATTAATAAATTTTA‑TGCT‑C‑G‑‑‑TTTTTTTT‑TTTTTTTT‑ACAAAAATAT‑AATTTATTTGATTAAACGTA‑TATTTATGt                                                                                          <  2:3732768/121‑1 (MQ=255)

                                     ttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑TGCT‑C‑GT‑TTTTTTTTT‑TTTTTTTT‑AAAAAAATAT‑AATTTATTTTATTAAAATTA‑TATTTAtt                                                                                           >  2:1838884/3‑127 (MQ=255)

                                     ttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑TGCT‑C‑G‑‑TTTTTTTTT‑TTTTTTTT‑AAAAAAATAT‑AATTTATTTGATTAAAAGTA‑TAttttttt                                                                                          >  1:1068754/3‑124 (MQ=255)

                                     ttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑TGCT‑C‑G‑‑TTTTTTTTT‑TTTTTTTT‑AAAAAAAATT‑AAATTAATTTATTAAAAATA‑Ttttttatt                                                                                          >  2:622889/3‑124 (MQ=255)

                                     ttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑TGCT‑C‑G‑‑‑TTTTTTTT‑TTTTTTTT‑AAAAAAATAT‑AATTTATTTTATTAAAATTA‑TATTTAtttt                                                                                         >  2:1488625/3‑128 (MQ=255)

                                      ttaaatattttttaatTTTAAAATTTTTTAATTATTTTAAAAAAATTTTATTTTAATTATTTTTATTTTT‑T‑T‑‑TTTTTTTTT‑TTTTTTTT‑AAAAAAATAT‑AATTTATTTGATTAAACGTA‑TATTTATGt                                                                                          <  1:1787216/117‑1 (MQ=255)

                                      taatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑TGCT‑C‑GT‑TTTTTTTTT‑TTTTTTTT‑AAAAAAATAT‑AATTAATTTTTTTAAAATTA‑TAttttttt                                                                                          >  2:2251974/2‑124 (MQ=255)

                                      taatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑TGCT‑C‑G‑‑TTTTTTTTT‑TTTTTTTT‑ACAAAAATAT‑AATTTATTTTATAAAACTTA‑‑ATTTaatttt                                                                                        >  1:4261559/2‑123 (MQ=255)

                                       aatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑TGCT‑C‑G‑‑TTTTTTTTT‑TTTTTTTT‑AAAAAAATAA‑TTTTTTTTTTATTAAAAATA‑AATTTATtttt                                                                                        >  1:4357112/1‑128 (MQ=255)

                                        atAAATGAATTATTTTTAAAATTTTTAAATTATTTTCAAATCATTATATATTAATCAATTTTT‑TTCT‑C‑G‑‑TTTTTTTTT‑TTTTTTTT‑ACAAAAATAT‑AATTTATTTGATTAAACGTA‑TATTTATGTTta                                                                                       <  1:570065/128‑1 (MQ=255)

                                          aaatGAAATATTTTTAAAATTTTTAAATTAATTTAAAATAATTATATATTAATAAATTTTA‑TTCT‑C‑G‑‑TTTTTTTTT‑TTTTTTTT‑ACAAAAATAT‑AATTTATTTGATTAAACGTA‑TATTTATGTTtaat                                                                                     <  1:3474170/125‑1 (MQ=255)

                                           aaataaTTTTTTTTTAAATTTTTAAATTTTTTTTAAATTATTATTATTTAATAAATTTAT‑TTGG‑C‑T‑‑TTTTTTTTT‑TTTTTTTT‑ACAAAAATAT‑AATTTATTTGATTAAACGTA‑TATTTATGTTtaata                                                                                    <  1:4123696/124‑1 (MQ=255)

                                            aattattattTTTATAATTTTTATATTATTTTTAAATAATTATATATTTATAAATTTTT‑TTTTAT‑T‑‑TTTTTTTTT‑TTTTTTTT‑ACAAAAATAT‑AATTTATTTGATTAAACGTA‑TATTTATGTTtaata                                                                                    <  2:384860/124‑1 (MQ=255)

                                             tGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑TGCT‑C‑GT‑TTTTTTTTT‑TTTTTTTT‑AAAAAAATAT‑AATTTATTTTATTAAACGTA‑TTTTTATTTTtaataa                                                                                   >  2:1227551/1‑128 (MQ=255)

                                              ttattattTTTTATATTTTTAAATTATTTTATAATTATTTTTTATTTATATATTTTA‑TTTT‑T‑G‑‑TTTTTTTTT‑TTTTTTTT‑ACAAAAATAT‑AATTTATTTGATTAAACGTA‑TATTTATGTTTAATaaaa                                                                                 <  2:4196420/126‑1 (MQ=255)

                                              gAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATATTA‑TGCT‑C‑G‑‑TTTTTTTTT‑TTTTTTTT‑ACAAAAAAAT‑TAATTATTTTATTAAAAATA‑TATTTATTTATAATaaaa                                                                                 >  1:4421415/1‑128 (MQ=255)

                                                attattTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑TGCT‑C‑G‑‑TTTTTTTTT‑TTTTTTTT‑AAAAAAATAT‑AATTTATTTTATTAAAATTA‑TATTTATTTTTAATAAAAAt                                                                               >  2:836817/1‑128 (MQ=255)

                                                  tattTTTAAAATTTTTTAATTATTTTTAAATATTTATATATTAATAAATTTTA‑TTTT‑T‑T‑‑TTTTTTTTT‑TTTTTTTT‑ACAAAAATAT‑AATTTATTTGATTAAACGTA‑TATTTATGTTTAATAAAAATgg                                                                             <  1:796305/128‑1 (MQ=255)

                                                    tttttCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑TGCT‑C‑G‑‑TTTTTTTTT‑TTTTTTTT‑AAAAAAATAT‑AATTTAATTTTTTAAACTTA‑TATTTTTTTTTAATAAAAATTGaa                                                                           >  2:4141951/1‑128 (MQ=255)

                                                     ttttAAAATTTTTAAATTATTTTCAAATAATTATCTATTAATAAATTTTA‑TGCT‑C‑GT‑TTTTTTTTT‑TTTTTTTT‑ACAAAAATAT‑AATTTATTTGATTAAACGTA‑TATTTATGTTTAATAAAAATGGaa                                                                           <  1:3994691/128‑1 (MQ=255)

                                                       tttataTTTTTAAATTTATTTTAAATTATTTTTTATTAATTAATTTTA‑TGTT‑T‑G‑‑TTTTTTTTT‑TTTTTTTT‑ACAAAAATAT‑AATTTATTTGATTAAACGTA‑TATTTATGTTTAATAAAAATGGAaaag                                                                        <  1:1916082/123‑1 (MQ=255)

                                                              ttttAAATTATTTTTAAATTATTATATTTTTATATATTTTA‑TTAT‑‑‑T‑‑TTTTTTTTT‑TTTTTTTT‑AAAAAAATAT‑AATTTATTTGATTAAACGTA‑TATTTATGTTTAATAAAAATGGAAAAGAAAGTGaa                                                                <  2:1180881/126‑1 (MQ=255)

                                                              tGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑TGCT‑C‑G‑‑TTTTTTTTT‑TTTTTTTT‑AAAAAAATAT‑AATTTATTTTATTAAACTTA‑TATTTATTTTAAATAAAAATGTAaaataaattta                                                                 >  1:1644681/1‑124 (MQ=255)

                                                               tttAAATTTTTTTAAATTAATTATATATTAATAAATTTTA‑TGAT‑A‑T‑‑TTTTTTTTT‑TTTTTTTT‑ACAAAAATAT‑AATTTATTTGATTAAACGTA‑TATTTATGTTTAATAAAAATGGAAAAGAAAGTGaa                                                                <  2:1740241/127‑1 (MQ=255)

                                                               gTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑TGCT‑C‑G‑‑TTTTTTTTT‑TTTTTTTT‑ACAAAAATAA‑AATTAATTTGATTAAAAGTA‑AATATATGTATAAAAAAAAGTGAAAAAAAAGttta                                                                >  1:3391493/1‑125 (MQ=255)

                                                                 tAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑TGCT‑C‑G‑‑TTTTTTTTT‑TTTTTTTT‑AAAAAAATAT‑AATTTATTTTATTAAACGTA‑TATTTATTTTTAATAAAAATTTAAAATAAATTTAAtt                                                              >  2:3088874/1‑128 (MQ=255)

                                                                    attattTTCAAATCATTATCTATTAATCAATTTTA‑TGCT‑C‑G‑‑TTTTTTTTT‑TTTTTTTT‑ACAAAAATAT‑AATTTATTTGATTAAACGTA‑TATTTATGTTTAATAAAAATGTAAAAGAAAGTTAATTTTc                                                           >  2:3789557/1‑128 (MQ=255)

                                                                     ttattTTAAAATAATTTTTTATTAATAAATTTTA‑TGTT‑C‑G‑‑‑‑TTTTTTT‑TTTTTTTT‑ACAAAAATAT‑AATTTATTTGATTAAACGTA‑TATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCata                                                        <  1:4570214/128‑1 (MQ=255)

                                                                       tttttttatttattattTATTTATAAATTTTT‑TTAT‑T‑G‑‑TTTTTTTTT‑TTTTTTTT‑ACAAAAATAT‑AATTTATTTGATTAAACGTA‑TATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCata                                                        <  2:2045537/117‑1 (MQ=255)

                                                                              tttttttatttatttatTAATTTTT‑TTTT‑T‑T‑‑TTTTTTTTT‑TTTTTTTT‑AAAAAAATAT‑ATTTTATTTGATTAAAAGTA‑TATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAAtaattt                                                 <  1:2946003/123‑1 (MQ=255)

                                                                                tCATTATCTATTAATCAATTTTA‑TGCT‑C‑GT‑TTTTTTTTT‑TTTTTTTT‑AAAAAAATAT‑AATTTATTTTATTAAACTTA‑TATTTATTTTTAATAAAAAAGAAAAATAAATTTATTTTTCATAAtaaatta                                                >  2:2917272/1‑128 (MQ=255)

                                                                                   ttATCTATTAATCAATTTTA‑TGCT‑C‑G‑‑‑TTTTTTTT‑TTTTTTTT‑ACAAAAATAT‑AATTTATTTTATTAAACTTA‑TATTTATTTTTAAAAAAAATGTAAAAGAATGTAAATTGTAATAATAATttatttaa                                           >  2:4054964/1‑128 (MQ=255)

                                                                                     aTCTATTAATCAATTTTA‑TGCT‑C‑G‑‑TTTTTTTTT‑TTTTTTTT‑AAAAAAATAT‑AATTTATTTTATTAAAAGTT‑TTTTTATTTTTAATAAAAATTTAAAAGAAATTTAATTATAAAAATAATTTAATTaaa                                          >  2:2438032/1‑128 (MQ=255)

                                                                                       cTATTAATCAATTTTA‑TGCT‑C‑G‑‑TTTTTTTTT‑TTTTTTTT‑ACAAAAATAT‑AATTTATTTGATTAAACGTA‑TATTTATTTTTAATAAAAATGTAAAAGAAATTTAATTTTCATAATAATTTAATTAAata                                        >  1:3869364/1‑128 (MQ=255)

                                                                                        tATTAATCAATTTTA‑TGCT‑C‑G‑‑TTTTTTTTT‑TTTTTTTT‑AAAAAAATAT‑ATTTTTTTTGATAAAACTTA‑TATTTATTTTTAATAAAAATTGAAAAAAAATTAAATTATAAAAAATATTAAATTAAataa                                       >  1:3527954/1‑127 (MQ=255)

                                                                                        tATTAATCAATTTTA‑TGCT‑C‑G‑‑TTTTTTTTT‑TTTTTTTT‑AAAAAAATAT‑AATTTATTTTATTAAACGTA‑TATTTATGTTTAATAAAAATGTAAAATAAATTTAATTGTAATAATAATTTAATTAAatat                                       >  2:1682079/1‑128 (MQ=255)

                                                                                         aTTAATCAATTTTA‑TGCT‑C‑G‑‑TTTTTTTTT‑TTTTTTTT‑ACAAAAATAT‑AATTTTTTTGATTAAACGTA‑TTTTTTTGTTTAATAAAAATGTAAAAAAAATTTAATTGTCATATTAATTTAATTAAatatt                                      >  2:492019/1‑127 (MQ=255)

                                                                                           tAATCAATTTTA‑TGCT‑C‑G‑‑‑TTTTTTTT‑TTTTTTTT‑AAAAAAATAT‑AATTTATTTTATTAAACGTA‑TATTTATTTTTAATAAAAATGTAAAATAAATTTAATTTTAATAATAATTTAATTAAATATATaa                                   >  1:4478118/1‑128 (MQ=255)

                                                                                           tAATCAATTTTA‑TGCT‑C‑G‑‑‑TTTTTTTT‑TTTTTTTT‑AAAAAAATAA‑AAATAATTTTAAAAAACGTA‑TATTTATTTTTAATAAAAATAAAAAAAAAATTTAATTGTAATAAAAATTTAATTAAataaataa                                   >  2:771128/1‑128 (MQ=255)

                                                                                            aaTCAATTTTA‑TGCT‑C‑G‑‑TTTTTTTTT‑TTTTTTTT‑AAAAAAATAT‑AATTTATTTTATTAAACGTA‑TATTTATTTTTAATAAAAATGTAAAAGAAATTGAATTGACATAATAATTTAATTAAAAAAATaa                                   >  1:1136365/1‑128 (MQ=255)

                                                                                             aTCAATTTTA‑TGCT‑C‑G‑‑‑TTTTTTTT‑TTTTTTTT‑ACAAAAATAT‑AATTTATTTGATTAAACGTA‑TATTTATGTTTAATAAAAATTTAAAAGAAATTTAATTTTAAAAATAATTTAATTAAATATATAACa                                 >  2:2830138/1‑128 (MQ=255)

                                                                                                 aTTTTA‑TGCT‑C‑G‑‑‑TTTTTTTT‑TTTTTTTT‑AAAAAAATAA‑AATTTATTTTATTAAACTTA‑ATTTTATTTTTATTAAAAATGGAAAAGAATTTAATTTGTAATATTATTTAATTTAAATAATTAACAAttt                             >  2:2485260/1‑126 (MQ=255)

                                                                                                     tA‑TGCT‑C‑G‑‑TTTTTTTTT‑TTTTTTTT‑ACAAAAATAT‑AATTTATTTTATTAAACGTA‑TTTTTATTTTTAATAAAAATGGAAAAGAAAGTGAATTTTCATAATAATTTAATTAAATATATAACAATTTAAg                          >  2:1021953/1‑128 (MQ=255)

                                                                                                      a‑TGCT‑C‑GT‑TTTTTTTTT‑TTTTTTTT‑ACAAAAATAT‑AATTTATTTTATTAAACGTA‑TATTTATTTTTAATAAAAATTGAAAAGAAATTGAATTTTCATAATAATTTAATTAAATATATAACAATTTaat                          >  2:4552280/1‑127 (MQ=255)

                                                                                                        ttttttttttttttttttt‑tttttttt‑ACAAAAATAT‑AATTTATTTGATTAAAAGTA‑TATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTa                            <  2:442146/118‑1 (MQ=255)

                                                                                                        tGCT‑C‑G‑‑TTTTTTTTT‑TTTTTTTT‑AAAAAAATAT‑AATTTATTTTTTTAAAATTA‑TATTTTTTTTTAAAAAAAATGTAAAAAAAATTTAATTTTAATAATAATTTAATTAAATATATAAAAATTTAAGtt                        >  2:4015540/1‑128 (MQ=255)

                                                                                                         gCT‑C‑G‑‑‑TTTTTTTT‑TTTTTTTT‑ACAAAAATAT‑AATTTATTTGATTAAACGTA‑TATTTTTTTTTAATAAAAATGGAAAATAAATTTATTTTTAATAATAATTTAATTAAATATATAACAATTTAATtttt                      >  2:216710/1‑128 (MQ=255)

                                                                                                           tttttttttttttttt‑tttttttt‑tttAATATAT‑TATTTATTTGATTTATAGTA‑TATTTATGTTTAATAAAAATTGAAAAGAAATTGAATTGTAATAATAATTTAATTAAATATATAACAATGTAAGt                         <  1:3285941/121‑1 (MQ=255)

                                                                                                             tttttttttttttt‑tttttttt‑ACAAATATAT‑AATTTATTTGATTAAAATTA‑TATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGttt                       <  1:2013106/123‑1 (MQ=255)

                                                                                                             ttg‑‑TTTTTTTTT‑TTTTTTTT‑AAAAAAATAT‑AATTTATTTGATTAAAAGTA‑TATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTa                     <  2:4360036/126‑1 (MQ=255)

                                                                                                             tatttttttttttt‑tttttttt‑AAAAAAATAT‑AATTTATTTGATTAAAAGTA‑TATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGttt                       <  2:1445558/123‑1 (MQ=255)

                                                                                                             c‑G‑‑TTTTTTTTT‑TTTTTTTT‑AAAAAAATAT‑AATTTATTTTATTAAA‑GTATTTTTTATTTTAAATAAAAATGAAAAAAAAATTTAATTGAAATAATAATTAAATTAAATATTTAACAAT‑AAAATTTTaaa                   >  2:530332/1‑128 (MQ=255)

                                                                                                             c‑G‑‑TTTTTTTTT‑TTTTTTTT‑AAAAAAATAT‑AATTTATTTGTTTAAACGTA‑TATTTATTTTTAATAAAAATGTAAAATAAAGTTAATTGTAATAATAATTTAATTAAATATATAAAAATTTAATTTTTaa                    >  2:1116628/1‑128 (MQ=255)

                                                                                                               tttttttttttt‑tttttttt‑ACAAAAATAT‑AATTTATTTGATTAAAAGTA‑TATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTa                     <  1:407119/125‑1 (MQ=255)

                                                                                                               tttttttttttt‑tttttttt‑AAAAAAATAT‑AATTTATTTGATTAAACGTA‑TATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTa                     <  1:1707297/125‑1 (MQ=255)

                                                                                                               g‑‑TTTTTTTTT‑TTTTTTTT‑ACAAAAATAT‑AATTTATTTTATTAAACGTT‑TTTTTATGTTTAATAAAATTGAAAAAAAAATTTAATTGTAAAAATAATTTATTTAAATATATAAAAATATAATTTTTaaa                   >  2:1547814/1‑128 (MQ=255)

                                                                                                               cgtttttttttt‑tttttttt‑AAAAAAATAT‑ATTTTATTTGATTAAACGTA‑TTTTTATTTTTAATAAAATTTAAAAATAAATTTAATTTTAATATTAATATATTTAATTATATTAAAATGTAATTTTTa                     >  2:2988729/4‑128 (MQ=255)

                                                                                                                 tttttttttt‑tttttttt‑AAAAAAATAT‑AATTTTTTTTTTTAAACGTT‑TTTTTATTTTTAATAAAAATGTAAAAAAAATTTAATTTTAATAATAATTTAATTAAATATATAAAAATTTAATTTTTaaa                   >  1:1431162/2‑128 (MQ=255)

                                                                                                                  gtttttttt‑tttttttt‑AAAAAAATAT‑AATTTTTTTTATTAAACTTA‑TATTTTTTTTTAATAAAATTTTAAAATAAATTTATTTTTATAAATAATTTAATTAATTATTTAAAAATATAAGTTTTaaaa                  >  2:3560388/2‑128 (MQ=255)

                                                                                                                   tttttttt‑tttttttt‑ACAAAAATAT‑AATTTATTTGATTAAACTTA‑TATTTTTTTTTAATAAAAATGTAAAAGAAATTTAATTTTAATAATAATTTAATTAAATATATAAAAATTTAATTTTTaaaaa                 >  2:2743682/1‑127 (MQ=255)

                                                                                                                   tttttttt‑tttttttt‑ACAAAAATAT‑AATTTATTTGATTAAACGTA‑TATTTATTTTTAATAAAAATTGAAAAGAAATTTAATTGTCATAATAATTTAATTAAATATAAAACAATTTAAGTTTTaaaaa                 >  1:3810972/1‑127 (MQ=255)

                                                                                                                   tttttttt‑tttttttt‑AATAAAATAT‑AATTTATTTGATTAAAAGTA‑TATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAac                 <  1:2482240/128‑1 (MQ=255)

                                                                                                                   tttttttt‑tttttttt‑AAAAAAATAT‑AATTTATTTGATTAAACGTA‑TATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAac                 <  1:1237541/128‑1 (MQ=255)

                                                                                                                    ttttttt‑tttttttt‑ACAAAAATAT‑AATTTATTTGATTAAACGTA‑TATTTTTGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTATTTAAATATATAACAATGTAATTTTTAAAact                >  2:1983268/1‑128 (MQ=255)

                                                                                                                     tttttt‑tttttttt‑ATAAAAATAT‑AATTTATTTGATTAATTTTT‑TATTTATGTTTAATAAATATGTATAAGAAAGTGAATTTTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAactt               <  1:2116828/128‑1 (MQ=255)

                                                                                                                      ttttt‑tttttttt‑AGAAATATAT‑AATTTATTTGATTAAACGTA‑TATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAactta              <  2:2626416/128‑1 (MQ=255)

                                                                                                                      ttttt‑tttttttt‑ACAAAAATAT‑AATTTATTTGATTAAACGTA‑TATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAactta              <  1:261611/128‑1 (MQ=255)

                                                                                                                        ttt‑tttttttt‑ACAAAAATAT‑AATTTATTTGATTAAACGTA‑TATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAacttact            <  2:3495273/128‑1 (MQ=255)

                                                                                                                            tttttttt‑ACAAAAATAT‑AATTTATTTGATTAAACGTA‑TATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACtttt         <  1:1502937/128‑1 (MQ=255)

                                                                                                                              tttttt‑ACAAAAATAT‑AATTTATTTGATTAAACGTA‑TATTTATGTTTAATAAAAATGGAAAAGAAATTGAATTGTAATATTAATTTAATTAAATATATAACAATTTAAGTTTTAAAACTTAAtttttt       >  2:1373193/1‑128 (MQ=255)

                                                                                                                                  tt‑ACAAAAATAT‑AATTTATTTGATTAAACGTA‑TATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGttt   <  2:3934983/128‑1 (MQ=255)

                                                                                                                                  tt‑AAAAAAATAT‑ATTTTATTTTATTTAATTTA‑TATTTATTTTTATTAAATATTTAAATGAATGTTAATTGTCATATTAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGttt   <  1:3159605/128‑1 (MQ=255)

                                                                                                                                  tt‑AAAAAAATAT‑AATTTATTTGATTAAACTTA‑TATTTATTTTTAATAAAAATTGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGttt   <  1:1003346/128‑1 (MQ=255)

AGAAAACTACTAGCACTTTTTTAAAAAATTTAAAATTAAAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑TGCT‑C‑G‑‑TTTTTTTTT‑TTTTTTTT‑ACAAAAATAT‑AATTTATTTGATTAAACGTA‑TATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTT  >  CP016816/420126‑420378

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`