Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816202,4850T.51.9% 370.4 / inf 479intergenic (+263/‑412)JCVSYN2_00840/JCVSYN2_00845hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand):  ref base T (36/170);  new base . (124/98);  total (179/300)
Fisher's exact test for biased strand distribution p-value = 8.62e-17
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.49e-04

Only 100 of 543 total aligned reads displayed.

AAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAACAATCCCCTTTTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATA  >  CP016816/202358‑202606
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aaGTTAGTTTAAATAATAGAGTTAATGTTAATTAAAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAACAATCCCCt                                                                                                                           <  1:1762067/128‑1 (MQ=255)
aaGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAACAATCCCCt                                                                                                                           <  1:3811558/128‑1 (MQ=255)
aaGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAACAATCCCCt                                                                                                                           <  1:3673735/128‑1 (MQ=255)
 agttagttTAATTAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAACAATCCCCtt                                                                                                                          <  1:1428685/128‑1 (MQ=255)
 aGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAACAATCCCCtt                                                                                                                          <  2:2465028/128‑1 (MQ=255)
 aGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAAAAAACCCAtt                                                                                                                          >  1:3972404/1‑128 (MQ=255)
  tttAGTGTAAATAATAGAGTTAATGTTAATTAAAATACCATAAAATTAATAATTCTTAT‑AATTTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTT‑CAC‑AAAT‑AAAAAAAAAACAATCCCCtta                                                                                                                         <  2:2725405/127‑2 (MQ=255)
  gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAACAATCCCCtta                                                                                                                         >  1:3776423/1‑127 (MQ=255)
   ttAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAACAATCCCCtaaa                                                                                                                        >  1:463202/1‑125 (MQ=255)
   ttAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAAAAATCCCCtaaa                                                                                                                        >  2:3456267/1‑125 (MQ=255)
     attgtAAATAAAAGAGTTAAGGTTAATTAAAATAACATAAACTTAATAATTCTTAT‑AATGTATATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAACAATCCCCttaaaa                                                                                                                      <  1:745239/126‑5 (MQ=255)
      gtgtAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCTATTTTTTAATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAAAAATCACCtaaaaaa                                                                                                                     >  1:4019490/1‑122 (MQ=255)
       tgtAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑‑AAAAAAAAACAATCCCCttaaaaata                                                                                                                   >  1:3863528/1‑121 (MQ=255)
       tgtAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCTATTTTTTTATTTGTATATATT‑CAC‑AAATAAAAAAAAAAACAATACCCtaaaaaa                                                                                                                     >  1:3561960/1‑122 (MQ=255)
        gtAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAACAATCCACttaaaaata                                                                                                                   >  1:4046007/1‑121 (MQ=255)
          aaaTAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAACAATCCCCt                                                                                                                           >  1:2415200/1‑118 (MQ=255)
             taataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTT‑CAC‑AAAT‑AAAAAAAAAAAAAAAACC‑ATtaaaaaataaaa                                                                                                             >  1:1550804/1‑128 (MQ=255)
              aataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAACAATCCCC‑‑‑TAAAAAATtaaaaaa                                                                                                          >  1:3537642/1‑128 (MQ=255)
                taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAATAAAAAAAAAAACAAACCCCTT‑‑‑AAAAATaaaaaaaa                                                                                                         >  1:4192471/1‑128 (MQ=255)
                taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAAAAAAACC‑‑AATAAAAAATaaaaaaaa                                                                                                         >  1:2870645/1‑128 (MQ=255)
                taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTATTAT‑AATATATATCCTCTTGATCTAAATAAATATTTGATTATCTT‑CAC‑AAAT‑AAAAAAAAAACAATCAAC‑‑‑TAAAAAATaaaaaaaaa                                                                                                        >  2:1781205/1‑128 (MQ=255)
                 agagTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTT‑CAC‑AAAT‑AAAAAAAAAACAAACCAC‑‑TTAAAAATTaaaaaaaaa                                                                                                        >  2:3722874/1‑128 (MQ=255)
                    tttAAGGTTAATTAAAATACAAAAAACATAAAAATTATTAT‑AATTTTTATCCTCGTGATCTATTTTTTT‑TTTTTTTATCTT‑CAC‑AAAA‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaa                                                                                                    <  2:4252121/127‑1 (MQ=255)
                    gTTAAGGTTAATTAAAATAAAATAAAATTAATAATTTTTAT‑AATTTTGATTCTTGTGATCTTTTTTTTTATTTGTTTATAAT‑AAC‑AAAT‑AAAAAAAAA‑‑AATCCCC‑‑ATAAAAATTaaaaaaaaaaaaaa                                                                                                   <  2:4146808/128‑1 (MQ=255)
                    gTTAACTTTAATTAAAATACCATAAAATTAATAATTATTAT‑AATTTATATCCTCTTTATATATTTTTTTATTTGTTTATCAT‑AAA‑AAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaa                                                                                                     <  1:2377948/128‑1 (MQ=255)
                     ttaattttaattaaAATAACAAAAACTTAAAAATATTTTT‑AAATTTTATCCACGTTATATATTTTTTTATTTGTTTATCTT‑CAA‑AAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaa                                                                                                    <  2:3492774/122‑1 (MQ=255)
                     ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCTTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAACAAACCCATT‑‑‑AAAAATaaaaaaaaaaaaaa                                                                                                   >  1:944261/1‑128 (MQ=255)
                     ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAACAAACCCC‑‑TTAAAAATTaaaaaaaaaaaaa                                                                                                    >  1:4089465/1‑128 (MQ=255)
                     ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCATCGTGATCTATATATTTATTAATTTATCTT‑CAC‑AAAT‑AAAAAAAAAAAAAAACCC‑‑‑TAAAAAATaaaaaaaaaaaaaa                                                                                                   >  2:2566026/1‑128 (MQ=255)
                      tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAACAAATCCC‑‑‑ATAAAAAATtaaaaaaaaaaaaaa                                                                                                  >  2:4046245/1‑128 (MQ=255)
                      tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑‑AAAAAAAAACAATAACC‑‑‑TAAAAAATaaaaaaaaaaaaaaaa                                                                                                 >  1:2993178/1‑128 (MQ=255)
                       aaGGTTAATTAAAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAAAAATCACCTT‑‑‑AAAAATaaaaaaaaaaaaaaaa                                                                                                 >  2:4008646/1‑128 (MQ=255)
                       aaGGTTAATTAAAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCTATTTTATTATTTTATTATCTT‑CAC‑AAAT‑AAAAAAAAAACAATCAC‑‑‑ATAAAAAATtaaaaaaaaaaaaaaa                                                                                                 >  1:2005740/1‑128 (MQ=255)
                        atgTTAATTAAAATACAATAAAATTAATAATT‑TTATAAAATTATATACTCTTTATATATTTTTTTATTTTTTTATATT‑AAC‑AAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaa                                                                                                 <  2:4392112/126‑1 (MQ=255)
                        aGGTTAATTAAAAAACCATAAAATTAATAATTATAAT‑AATGTATATACTCGTGATCTATTTTTTTAATTTTTTATATT‑CAC‑AAAT‑AAAAAAAAAACAAACCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaa                                                                                                 <  2:328096/128‑1 (MQ=255)
                         ggTTAATTAAAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAACAAACCCC‑‑‑TAAAAAATaaaaaaaaaaaaaaaaaa                                                                                               >  1:4392112/1‑128 (MQ=255)
                         ggTTAATTAAAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATATT‑CAC‑AAAT‑AAAAAAAAAACAATCCC‑‑ATTAAAAAATaaaaaaaaaaaaaaaaa                                                                                                >  1:3420143/1‑128 (MQ=255)
                            taattaaAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAACAATCCCC‑‑‑TAAAAAATtaaaaaaaaaaaaaaaaaaaa                                                                                            >  1:3462531/1‑128 (MQ=255)
                            taattaaAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAACAATCCC‑‑ATTAAAAATTaaaaaaaaaaaaaaaaaaaa                                                                                             >  2:3562647/1‑128 (MQ=255)
                            taaataaaAAAACAAAAAATTAAAAATTTTTAT‑AATTTATAAACACGTTATATATTTTTTTATTTTTTTATAAT‑AAA‑AAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaaa                                                                                             <  2:3955937/128‑1 (MQ=255)
                             aattaaAATACCATAAACTTAATAATTCTTAT‑AATGTATATCATCGTGATATATTTTTATATTAGAATATCTT‑CAC‑AAAT‑AAAAAAAAAACAAT‑‑CAAAAAAAAAAATaaaaaaaaaaaaaaaaaaaaa                                                                                            >  2:1012030/1‑128 (MQ=255)
                             aattaaAATAACATAAAATTAAAAATTTTTAT‑AATTTATTTACTCGTTATATATTTTTTTATTTGTTTATATTAAAA‑AAAA‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaac                                                                                             <  2:3657533/128‑2 (MQ=255)
                             aattaaAATAACAAAAAATTTATATTTTTTTT‑AATTTTTATTCTCTTTATTTATTTTTTTATTTTTTTTTATT‑AAA‑AAAT‑AAAAAAAAAAAAAACCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaaac                                                                                            <  1:4156803/128‑2 (MQ=255)
                               ttaaAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCTATTTTTTTATTTATTTATCTT‑CAC‑AAAT‑AAAAAAAAAACAAT‑‑‑AAAATAAAAAATaaaaaaaaaaaaaaaaaaaaataa                                                                                         >  2:4473953/1‑125 (MQ=255)
                                taaAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCATCGTGATCTATTTTTTTATTTGTTTATCTT‑AAC‑AAAT‑AAAAAAAAAACAAT‑‑AAAATAAAAAATTaaaaaaaaaaaaaaaaaaaaaaaa                                                                                         >  1:132810/1‑125 (MQ=255)
                                  aaaTACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                       >  1:1243959/1‑123 (MQ=255)
                                  aaaTACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAAAAATCAC‑‑ATTAAAAATTaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                       >  2:548283/1‑123 (MQ=255)
                                  aaaTACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAAAAATAAAC‑‑TAAAAAATTaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                       >  1:1616926/1‑123 (MQ=255)
                                   aaaaaaaaaaaaTTAATAATTATTAT‑AATTTATATCCTCGTGATAAATTTTTTTATTTGTTTATATT‑AAC‑AAAT‑AAAAAAAAAAAAAACCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAaaac                                                                                    <  1:172521/120‑1 (MQ=255)
                                   aaTACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTAaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                      >  1:546796/1‑128 (MQ=255)
                                    aatacATAAAATTAATAATTATTAT‑AAATTATTTACAAGTGATTAATTTTTTTTTTTTTTTAAATT‑AAA‑AAAT‑AAAAAAAAAAAAATCCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                   <  2:1113819/124‑1 (MQ=255)
                                     atcaaTAAAATTAATAAATCTTAA‑TATGTATAACCCCGTTTTATATTTTTTTTTTTTTTTATATT‑AAA‑AAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                   <  2:3836549/124‑1 (MQ=255)
                                     aaacaaaaaaTTAATAATTTTTAT‑AAATTTTATCATATTTATATTTTTTTTTAATTTTTTATATT‑AAA‑AAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAaaacaa                                                                                  <  2:2104003/122‑1 (MQ=255)
                                      aacATAAAATTAATAATTATTAT‑AATTTATATAATCGTTATTTATTTTTTTATTTTTTTATCTT‑AAA‑AAAA‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAaaacaaa                                                                                 <  2:1594418/126‑1 (MQ=255)
                                        cATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAACCATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaacaaaaaccaaaact                                                                                 >  1:2341601/1‑117 (MQ=255)
                                         aataaattAAAAATTTTTAA‑AATTTATATATTAGTTATTAATTTTTTTTTTTTTTTATATT‑AAA‑AAAT‑AAAAAAAAAAAAAACCCCTT‑‑‑AAAAAT‑‑TAAAAAAAAAAAAAAAAAACTAAAAACAAActct                                                                             <  2:4308767/122‑1 (MQ=255)
                                         aaaaaaTTAATAATTATTAT‑AATTTATATCATATTTATCTATTTTTTTATTTTTTTATATT‑AAA‑AAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAAAAAT‑‑‑AAAAAAAAAAAAAAAAAACTAAAAACAAActct                                                                             <  2:4092868/126‑1 (MQ=255)
                                         aTAAAATTAATAATTATTAA‑AATTAAAATACACTTTATATATTTTTTTATTTTTTTATATT‑AAA‑AAAA‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAActc                                                                              <  2:754566/128‑1 (MQ=255)
                                          tAAAATTAAAAATTCTAAT‑AATGTACAACCTCGTGATCAATTTTTTTATTTGTTTAACTT‑AAC‑AAAT‑AAAAAAAAAACAATCCCCAT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAActct                                                                             <  2:868899/128‑1 (MQ=255)
                                          tAAAATTAAAAAATATTAA‑AATTTATATACAAGAGATATATTTTTTTATTTTTTTAAAAT‑AAA‑AAAA‑AAAAAAAAAAAAAACCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAActc                                                                              <  2:1421278/128‑1 (MQ=255)
                                            aaattAAAAATTATTAT‑AATGTATATACTCGTTATATATTTTTTTATTTTTTTATTTT‑AAA‑AAAT‑AAAAAAAAAAAAATACCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                            <  2:1670437/125‑1 (MQ=255)
                                             tataattaatTTTTAT‑AATTTATATTCTCGTTTTTTATTTTTTTTTTTGTTTATTTT‑TAA‑AAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                            <  1:4301066/122‑1 (MQ=255)
                                               ataatatTTTTTTT‑AATTTAGATTCTTGTTTTTTATTTTTTTATTTTTTTATTTT‑TAA‑AAAT‑AAAAAAAAAACAAACCCCTT‑‑‑AAAAAT‑‑TAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCt                                                                       <  1:2566026/127‑1 (MQ=255)
                                                     attattAA‑AATGTTTATCCTTCTGTTATATTTTTTTATTTTTTTAAAAT‑‑AA‑AAAA‑AAAAAAAAAACAATACCCAT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAAt                                                                 <  2:2958548/128‑1 (MQ=255)
                                                            tttaagTAGATCATCTGTATATATTATTTTTTTTTTTAATCTT‑CAA‑AAAT‑AAAAAAAAAACAATACCCAT‑‑‑AAAAAT‑‑‑TAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtat                                                          <  2:2881223/123‑1 (MQ=255)
                                                                ttaatataatagTGATCTAATTTTTTATTTTTTTATATT‑CAC‑AAAT‑AAAAAAAAAAAAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtatt                                                         <  2:4191667/117‑1 (MQ=255)
                                                                 tttaaTCCTAGTGATTTTATTTTTTATTTTTTATTTTT‑AAA‑AAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtattat                                                       <  1:307779/124‑1 (MQ=255)
                                                                   tcttCCTCGTGATGTTTTTTTTTTTTTGTTTATATT‑CAC‑AAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑AAAAAT‑‑‑TAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                   <  1:4432224/125‑1 (MQ=255)
                                                                   atttcctccTGATCTATTTTTTTATTTTTTTATCTT‑CAC‑AAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAc                                                     <  2:3789743/125‑1 (MQ=255)
                                                                     attatatttatttatttttttattttttTTTTAT‑AAT‑AAAT‑TAAAAAAAAAAAATTACC‑‑TTATAAAAT‑‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                   <  2:1907504/116‑1 (MQ=255)
                                                                       tatagtttttatttttttttttttttTATATT‑AAA‑AAAA‑AAAAAAAAAAAAATACACTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                                  <  1:1012030/116‑1 (MQ=255)
                                                                          tttttaatttttttttATTT‑TTTATAAT‑AAA‑AAAA‑AAAAAAAAAAAAAAACCCATT‑‑AAAAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                              <  2:3021414/119‑1 (MQ=255)
                                                                          tttgattattttttatatttttttatatt‑AAA‑AAAT‑AAAATAAAAAAAATACCCATT‑‑‑‑AAAT‑ATTAAAAAAAAAAAAAAAAACTAAAAACAAAGTCTATTTCTTAAAATTCCCTATTATACCACatttt                                             <  2:3709766/119‑1 (MQ=255)
                                                                          tgtgaatattttttttAATTTTTTATTAT‑AAC‑AAAT‑AAAAAAAAAAAAAAACCC‑‑ATAAAAAAT‑‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                              <  2:3689263/119‑1 (MQ=255)
                                                                          tctgttaatttttttttTATTTTTTTTTT‑AAA‑AAAT‑AAAAAAAAAAAAATACC‑‑ATTAAAAAAT‑‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                              <  1:4538931/119‑1 (MQ=255)
                                                                          cgttttataattttttATTTTTTTAACAT‑CACAAAAA‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAAT‑‑TAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                              <  2:2285581/118‑1 (MQ=255)
                                                                              ttatatttttttattttttTATTTT‑AAA‑AAAT‑TAAAAAAAAACAATACCCTT‑‑‑AAAAAT‑‑‑TAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                        <  2:3533305/125‑1 (MQ=255)
                                                                              ttatATTTTTTTATTTGTTTATATT‑AAA‑AAAA‑AAAAAAAAAACAAAACACTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatt                                          <  2:3648466/125‑1 (MQ=255)
                                                                                atttttttttatttttttaTATT‑AAA‑AAAA‑AAAAAAAAAACAATAACCTT‑‑‑AAAAAT‑‑TAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                       <  1:3919214/125‑1 (MQ=255)
                                                                                aattttttttatttttttaTATT‑AAA‑AAAA‑AAAAAAAAAAAAATACCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                        <  1:1149412/125‑1 (MQ=255)
                                                                                 taatttattATTTTTTTATAAT‑ATA‑AAAT‑AAAAAAAAAACAATACCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                       <  2:3360331/125‑1 (MQ=255)
                                                                                  tattttttATTTGTTTATATT‑AAA‑AAAA‑AAAAAAAAAAAAAATCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                      <  1:1094247/126‑1 (MQ=255)
                                                                                  aTTTTTTTATTTGTTATTATT‑AAA‑TAAT‑AAAAAAAAAAAAATAACCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                      <  2:2152654/128‑1 (MQ=255)
                                                                                   tttttttatttttttaTAAT‑AAA‑AAAA‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                      <  2:580604/128‑1 (MQ=255)
                                                                                    ttttttatttttttatATT‑AAA‑AAAA‑AAAAAAAAAAAAATACCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                     <  2:2128786/128‑1 (MQ=255)
                                                                                     tttttATTTTTTTATAAT‑AAC‑AAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                                    <  2:1175115/128‑1 (MQ=255)
                                                                                      ttttttttttttATTTC‑AAA‑AAAA‑AAAAAAAAAAAAATACCC‑‑‑TAAAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTCTTATACCACATTTTATTTTTAAAAt                                  <  1:2248208/128‑1 (MQ=255)
                                                                                       ttttttttttTATATT‑AAA‑AAAA‑AAAAAAAAAAAAATAACC‑‑TTAAAAAAT‑‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                                 <  1:3710645/128‑1 (MQ=255)
                                                                                        atATTTTTTTATAAT‑AAA‑AAAA‑AAAAAAAAAACAATACCATT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAAATCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                                <  2:4528116/127‑1 (MQ=255)
                                                                                         ttttttttTATATT‑TAC‑AAAA‑AAAAAAAAAACAATCCCATT‑‑‑AAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                                <  2:3894114/126‑1 (MQ=255)
                                                                                         ttattGTTTATATT‑AAA‑AAAA‑AAAAAAAAAACAATCACATT‑‑‑AAAAAT‑‑TAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                              <  2:461539/125‑1 (MQ=255)
                                                                                             tttttATATT‑TAA‑AAAA‑AAAAAAAAAAAAAAACCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                            <  1:3749917/126‑1 (MQ=255)
                                                                                              ttttATTTT‑AAC‑AAAT‑AAAAAAAAAAAAATACCATT‑‑‑AAAAAT‑TTAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                          <  1:3528588/127‑1 (MQ=255)
                                                                                                ttATATT‑AAA‑AAAA‑AAAAAAAAAACAATCCCATT‑‑‑AAAAAT‑‑TAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGAc                       <  2:1526830/128‑1 (MQ=255)
                                                                                                   tattataaaaaaT‑AAAAAAAAAACAAAACCCTT‑‑‑AAAAAT‑‑TAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                      <  1:4259520/119‑1 (MQ=255)
                                                                                                    tttttaaaaaaa‑aaaaaaaaaaaaATCCCC‑‑TTAAAAAAT‑‑‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACat                     <  2:4436798/120‑1 (MQ=255)
                                                                                                     taataaaaaaT‑AAAAAAAAAACAATAACAAT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                      <  2:2385902/121‑1 (MQ=255)
                                                                                                        ttaaaaaa‑aaaaaaaaaaaaaaaaCCCTTAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                      <  2:2804957/124‑1 (MQ=255)
                                                                                                         taaaaaT‑AAAAAAAAAACAA‑CTCCTTT‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAATAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataat                  <  2:1268174/125‑1 (MQ=255)
                                                                                                              aT‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAAAAAACACTATTTATTAAAAATAAAAATTATAACAAATTTTATTTTAAAAAAAAAAAATTAAAATAttatata             >  2:3402786/1‑128 (MQ=255)
                                                                                                                                   |                                                                                                                         
AAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAACAATCCCCTTTTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATA  >  CP016816/202358‑202606

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑