BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP016816	= 202486	68 (0.080)	147 (0.160)	60/250	34.8	67.9%	intergenic (+264/‑411)	JCVSYN2_00840/JCVSYN2_00845	hypothetical protein/lipoprotein
*	?	CP016816	202490 =	71 (0.080)	147 (0.160)	60/250	34.8	67.9%	intergenic (+268/‑407)	JCVSYN2_00840/JCVSYN2_00845	hypothetical protein/lipoprotein
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 185 total aligned reads displayed.

TAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑AT‑CT‑TCACAAAT‑AAAAAAA‑AAACAATCCCCTTTTAAA‑‑AAAT‑AAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATA  >  CP016816/202371‑202616

taataTACTTAAGGTTAATTAAAAAAACAAAAAAATAAAAAATAAAATAAATTACAACCTCGTTATC‑TATTTTTTTATTTTTTT‑AT‑CT‑TAACAAAA‑AAAAAAA‑AAACAATCCCC‑‑ttaaa‑‑aatt‑aaa‑aa                                                                                                                      <  2:274761/128‑1 (MQ=255)

   taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑AT‑CT‑TCACAAAT‑AAAAAAA‑AAACAATCCCC‑‑‑TAAA‑‑AAAT‑aaa‑aaaaaa                                                                                                                  >  2:1587451/1‑128 (MQ=255)

       ttttattttaattaaAAAAAAAAAAAATTAATAATTATTATAAATTTTATCCTCGTGTTT‑TATTTTTTTTTTTTTTT‑AT‑AT‑TCACAAAA‑AAAAAAA‑AAAAAATCCCC‑‑ATAAA‑‑AAAT‑aaa‑aaaaaaaaa                                                                                                               <  1:1646678/121‑1 (MQ=255)

       gTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATC‑TATTTTTTTATTTTTTT‑AT‑CT‑TCACAAAT‑AAAAAAA‑AAACAATAAC‑‑AATAAA‑‑AAAT‑aaa‑aaaaaaaaa                                                                                                               >  2:1843420/1‑128 (MQ=255)

       gTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑AT‑CT‑TCACAAAT‑AAAAAAA‑AAACAAACCCC‑‑TTAAA‑‑AATT‑aaa‑aaaaaaaaa                                                                                                               >  1:1666529/1‑128 (MQ=255)

        ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑AT‑CT‑TCACAAATAAAAAAAA‑AAACAAACAAC‑‑TTAAA‑‑AAAT‑aaa‑aaaaaaaaa                                                                                                               >  2:172456/1‑128 (MQ=255)

        ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑AT‑CT‑TCACAAAT‑AAAAAAA‑AAACAATCCCC‑‑ATAAA‑‑AAAT‑aaa‑aaaaaaaaaa                                                                                                              >  1:1262028/1‑128 (MQ=255)

        ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑AT‑CT‑ACACAAAT‑‑AAAAAA‑AAACAATCCAC‑‑TTAAA‑‑AATT‑aaa‑aaaaaaaaaaa                                                                                                             >  1:386644/1‑128 (MQ=255)

        ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTATTTTATTTGTTT‑AT‑CT‑TCACAAAT‑AAAAAAA‑AAACAAACAAC‑‑‑TAAA‑‑AAAT‑aaa‑aaaaaaaaaaa                                                                                                             >  2:1947672/1‑128 (MQ=255)

         tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑AT‑CT‑TCACAAAT‑AAAAAAA‑AAACAATCCCC‑‑TTAAA‑‑AATT‑aaa‑aaaaaaaaaaa                                                                                                             >  2:234450/1‑128 (MQ=255)

         tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑AT‑CT‑TCACAAAT‑‑AAAAAA‑AAACAATCCCC‑‑TTAAA‑‑AATT‑aaa‑aaaaaaaaaaaa                                                                                                            >  2:1586800/1‑128 (MQ=255)

          aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATCATCGTGATC‑TATTTTTTTATTAATTT‑AT‑CT‑TCACAAAT‑AAAAAAA‑AAAAAAAAAAC‑‑‑TAAA‑‑AAAT‑taa‑aaaaaaaaaaaaa                                                                                                           >  1:1378/1‑128 (MQ=255)

          aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑AT‑CT‑TCACAAAT‑AAAAAAA‑AAACAATCCCCTT‑‑‑AA‑‑AAAT‑aaa‑aaaaaaaaaaaaa                                                                                                           >  2:1520025/1‑128 (MQ=255)

          aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑AT‑CT‑TCACAAAT‑AAAAAAA‑AAACAAAACCAAT‑‑‑AA‑‑AAAT‑aaa‑aaaaaaaaaaaaa                                                                                                           >  1:430000/1‑128 (MQ=255)

          aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑AT‑CT‑TCACAAAT‑AAAAAAA‑AAAAAAATCAC‑‑CTAAA‑‑AAAT‑taa‑aaaaaaaaaaaa                                                                                                            >  1:703673/1‑128 (MQ=255)

          aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAAAGTAGATCATCGTGATC‑TATTTTTTTATTTGTTT‑AT‑CT‑TCACAAAT‑AAAAAAA‑AAACAAACACC‑‑TAAAA‑‑AAAT‑aaa‑aaaaaaaaaaaa                                                                                                            >  1:1516303/1‑128 (MQ=255)

           aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑AT‑CT‑TCACAAAT‑AAAAAAA‑AAACAATCCC‑‑‑ATAAA‑‑AAAT‑taa‑aaaaaaaaaaaaaa                                                                                                          >  1:232710/1‑128 (MQ=255)

           aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑AT‑CT‑TCACAAAT‑AAAAAAA‑AAACAAACCCCTT‑‑‑AA‑‑AAAT‑aaa‑aaaaaaaaaaaaaa                                                                                                          >  1:986532/1‑128 (MQ=255)

           aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑AT‑AT‑TAAAAAAT‑AAAAAAA‑AAACAA‑‑ACAAATTAAA‑‑AATT‑aaa‑aaaaaaaaaaaaa                                                                                                           >  1:1372762/1‑128 (MQ=255)

           aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATACTCTTGATC‑TATTTTTTTATTTGTTT‑AT‑CT‑TCAAAAAT‑AAAAAAA‑AAAAAAT‑‑AAAATTAAA‑‑AATT‑aaa‑aaaaaaaaaaaaa                                                                                                           >  1:1156134/1‑128 (MQ=255)

            ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑AT‑CT‑TCACAAAT‑AAAAAAATAAACAATCCCC‑‑ATAAA‑‑AATT‑aaa‑aaaaaaaaaaaaa                                                                                                           >  1:224989/1‑128 (MQ=255)

            ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑AT‑CT‑TCACAAAT‑AAAAAAA‑AAACAATCCCC‑‑‑TAAA‑‑AAAT‑aaa‑aaaaaaaaaaaaaaa                                                                                                         >  1:840035/1‑128 (MQ=255)

            ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑AT‑CT‑TCACAAAT‑AAAAAAA‑AAACAATCCCAAT‑‑‑AA‑‑AAAT‑aaa‑aaaaaaaaaaaaaac                                                                                                         >  2:1285010/1‑127 (MQ=255)

             ttactataaAATACCAAAAAATTTATAAATGTTATTATCTCTCTCCCCG‑GTTCTTATTTTTTTTATTTTTT‑TT‑CT‑TAAAAAAA‑AAAAAAA‑AAAAAAACCCC‑‑TTAAA‑‑AATT‑aaa‑aaaaaaaaaaaaaaa                                                                                                         <  1:1011096/122‑1 (MQ=255)

              ttaattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑AT‑CT‑TCACAAAT‑AAAAAAA‑AAAAAATCCCC‑‑TTAAA‑‑AATT‑aaa‑aaaaaaaaaaaaaaaa                                                                                                        >  2:1815945/1‑128 (MQ=255)

              ttaattaaAAAAAAATAAAATAAATAAATTTTATAAATTATATACACGTGTTT‑TATTTTTTTTTTTTTTT‑AA‑AT‑TAACAAAA‑AAAAAAA‑AAAAAAATCCC‑CTTAAA‑‑AATT‑aaa‑aaaaaaaaaaaaaaa                                                                                                         <  2:1645825/128‑1 (MQ=255)

               taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑AT‑CT‑TCACAAAT‑AAAAAAA‑AAACAAACACCTT‑‑‑AA‑‑AAAT‑aaa‑aaaaaaaaaaaaaaaaaa                                                                                                      >  1:610438/1‑128 (MQ=255)

               taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑AT‑CT‑TCACAAAT‑AAAAAAA‑AAAAAATCAC‑‑ATTAAA‑‑AATT‑aaa‑aaaaaaaaaaaaaaaaa                                                                                                       >  2:1561882/1‑128 (MQ=255)

                aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑AT‑CT‑TCACAAAT‑AAAAAAA‑AAACAATCCCCTTAAAAA‑‑Taaa‑aaa‑aaaaaaaaaaaaaaaa                                                                                                        >  1:225618/1‑128 (MQ=255)

                aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATACTCTTTATA‑TATTTTTTAATATTTTT‑AT‑CT‑TAACAAAT‑AAAAAAA‑AAACAAACACAATaaaaa‑‑aaaa‑aaa‑aaaaaaaaaaaaaaaa                                                                                                        >  2:117230/1‑128 (MQ=255)

                aattaaAATACCATAAACTTAATAATTATTATAAAGTAGATCCTCGTGATC‑TATTTTTTTATATTTTT‑AT‑CT‑TCACAAAT‑AAAAAAA‑AAACAATACAC‑‑TAAAA‑‑AATT‑aaa‑aaaaaaaaaaaaaaaaaa                                                                                                      >  1:929606/1‑128 (MQ=255)

                aattaaAATACCATAAACTTAAAAATTCTTAAAATGTAGATCCTCGTTATC‑TATTTAATTATATGAAT‑AA‑CT‑TCACAAAA‑AAAAAAA‑AAACAAAACC‑‑AAAAAA‑‑AATT‑aaa‑aaaaaaaaaaaaaaacaa                                                                                                      >  1:1403072/1‑128 (MQ=255)

                 attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTTTTT‑AT‑CT‑TAACAAAT‑AAAAAAA‑AAACAATACC‑‑ATAAAA‑‑AAAT‑aaa‑aaaaaaaaaaaaaaaaaaa                                                                                                     >  1:559386/1‑127 (MQ=255)

                 attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑AT‑CT‑TCACAAAT‑AAAAAAA‑AAACAAT‑‑AAAATTAAA‑‑AATT‑aaa‑aaaaaaaaaaaaaaaaaaa                                                                                                     >  2:5102/1‑127 (MQ=255)

                  ttaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑AT‑CT‑TCACAAAT‑AAAATAA‑AAACAATCCCCTTAAAAA‑‑TTAT‑aaa‑aaaaaaaaaaaaaaaata                                                                                                      >  1:1831909/1‑126 (MQ=255)

                    aaaaaaACATAAAAATTATAATTATTATAATTTATATACTTTTGTTA‑TATTTTTTTATTTTTTT‑AT‑CT‑TAACAAAT‑AAAAAAA‑AAAAAATCCCC‑‑TTAAA‑‑AATT‑AAA‑AAAAAAAAAAAAAAAAAACTaa                                                                                                  <  2:1797177/128‑1 (MQ=255)

                    aaaaTACAAAAAACTTATAATTTATTATTAAGAATATCCTCTTGATA‑TATTTTTTTATTTGTTT‑AT‑AA‑TCACAAAT‑AAAAAAA‑AAACAATCCCC‑‑TTAAA‑‑AATT‑aaa‑aaaaaaaaaaaaaactaaaaac                                                                                                  <  2:631363/128‑9 (MQ=255)

                     aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑AT‑CT‑TCACAAAT‑AAAAAAA‑AAAAAAT‑‑CCAAATAAA‑‑AATT‑aaa‑aaaaaaaaaaaaaaaaaaaaaaa                                                                                                 >  2:219543/1‑123 (MQ=255)

                      aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑AT‑CT‑TCACAAATAAAAAAAA‑AAACAATCCCC‑‑TTAAA‑‑AATT‑aaa‑aaaaaaaaaaaaaaaaaaaaaaa                                                                                                 >  1:1754854/1‑123 (MQ=255)

                      aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑AT‑CT‑TCACAAAT‑AAAAAAA‑AAACAATCCCC‑‑TTAAA‑‑AATT‑Aaa‑aaaaaaaaaaaaaaaaaaaaaaaa                                                                                                >  1:1865492/1‑128 (MQ=255)

                      aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑AT‑CT‑TCACAAAT‑AAAAAAA‑AAACAATCCCC‑‑TTAAA‑‑AATT‑Aaa‑aaaaaaaaaaaaaaaaaaaaaaaa                                                                                                >  2:1667920/1‑128 (MQ=255)

                      aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑AT‑CT‑TCACAAAT‑AAAAAAA‑AAACAATCCC‑‑ATTAAA‑‑AATT‑Aaa‑aaaaaaaaaaaaaaaaaaaaaaaa                                                                                                >  2:1615939/1‑128 (MQ=255)

                         aaaaaaaaaaaaataaaTCTTATAAATTATATCATCTTTATA‑TATTTTTTTATTTTTTT‑AT‑AT‑TAACAAAT‑AAAAAAA‑AAA‑AATCCCCTT‑‑‑AA‑‑AAAT‑TAA‑AAAAAAAAAAAAAAAAAACTAAaaacaaa                                                                                           <  2:693429/117‑1 (MQ=255)

                          aaaTAAACTTAATAATTATTAAAATTTATAAAATTGTTATA‑TATTTTTTTATTTTTTT‑AA‑AA‑TAAAAAAA‑AAAAAAA‑AAAAAATCCCCTT‑‑‑AA‑‑AAAT‑‑TA‑AAAAAAAAAAAAAAAAAACTAAaaacaaac                                                                                          <  2:1347007/126‑1 (MQ=255)

                           aaaaaaaTTAATAATTATTAAAATTTATATACTCTTTATC‑AATTTTTTTATTTTTTT‑AA‑AT‑TAAAAAAA‑AAAAAAA‑AAAAAATCCCC‑‑TTAAA‑‑AAAT‑‑AA‑AAAAAAAAAAAAAAAAAACTAAaaacaaac                                                                                          <  2:1674427/125‑1 (MQ=255)

                             tAAACATTATAAATTTTTTAATTTTCATACTCGGTATC‑TATTTTTTTATTTTTTT‑AT‑CT‑TCAAAAAT‑AAAAAAA‑AAAAAAACCCCTT‑‑‑AA‑‑AAAT‑‑‑T‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                      <  1:1564429/128‑1 (MQ=255)

                             tAAAATTAATAATTCTTATAATTTTTATAAAAGTTATA‑TTTTTTTTTTTTTTTTT‑AA‑AT‑TAAAAAAA‑AAAAAAA‑AAAAAATCCCCTT‑‑‑AA‑‑AAAT‑‑TT‑AAAAAAAAAAAAAAAAAACTAAAAACAAActct                                                                                       <  2:232710/128‑1 (MQ=255)

                                aCTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑AT‑CT‑TCACAAAT‑AAAAAAA‑AAACAATCCCC‑‑TTAAA‑‑AATT‑AAA‑AAAAAAAAAAAAAAAAAA‑AAAaaacaaacacaat                                                                                     >  1:1768285/1‑123 (MQ=255)

                                  ttAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑AT‑CT‑TCACAAAT‑AAAAAAA‑AAACAATCCCC‑‑TTAAA‑‑AATT‑AAA‑AAAAAAAAAAAAAAAAAA‑AAAAAACAAACTATAtta                                                                                   >  2:205763/1‑127 (MQ=255)

                                   taataaTTTTTAAAATTAATATACTCTTTATA‑TATTTTTTTTTTTTTTT‑AT‑AT‑TAAAAAAT‑AAAAAAA‑AAAAAAACCCCTT‑‑‑AA‑‑AAAT‑TAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTc                                                                                  <  2:518838/128‑1 (MQ=255)

                                    aataaattataaaaTTTATATCCACGTTTTA‑TATTTTTTTATTTTTTT‑AA‑CT‑ACAAAAAA‑AAAAAAA‑AAACAAACCCC‑‑TTAAA‑‑AAAT‑‑‑A‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCtt                                                                                <  2:1666529/116‑1 (MQ=255)

                                    aaaaatTATTATAATTTATATAATCTTTATA‑AATTTTTTTATTTTTTA‑AT‑AA‑TAAAAAAA‑AAAAAAA‑AAAAAATACCCTT‑‑‑AA‑‑AAAT‑‑TA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCtt                                                                                <  2:118215/125‑1 (MQ=255)

                                      aaatTCTTATAATTTATATACTTTTTATA‑TTTTTTTTTATTTGTTT‑AT‑CT‑TAACAAAT‑AAAAAAA‑AAA‑AATCCCCTT‑‑‑AA‑‑AAAT‑TAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTaa                                                                              <  2:1016880/127‑1 (MQ=255)

                                            ttATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑AT‑CT‑TCACAAAT‑‑AAAAAA‑AAACAATCCCC‑‑TTAAA‑‑AATT‑AAA‑AATAAAAAAAAAAAAAAA‑‑AAAAACAAAAACTATTTCTAAAAATTacc                                                                       >  1:1839321/1‑128 (MQ=255)

                                                aaTTTATATACTCGTTATA‑TATTTTTTTATTTTTTT‑AT‑AT‑TAAAAAAT‑AAAAAAA‑AAAAAATCCCCTT‑‑‑AA‑‑AAAT‑‑‑T‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtatt                                                                   <  2:686040/128‑1 (MQ=255)

                                                   gtacatacgagTGATA‑TAATTTTTTATTTTTTT‑AT‑CA‑TAAAAAAA‑AAAAAAA‑AAACAATCCCC‑‑ATAAA‑‑AAAT‑‑‑‑‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATtata                                                                <  2:1275591/118‑1 (MQ=255)

                                                       aatatCGTTATT‑TAATTTTTTAATTTTTT‑AT‑CT‑AAAAAAAA‑AAAAAAA‑AAAAAATACCC‑‑TTAAA‑‑AAAT‑‑‑‑‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                                            <  1:246874/124‑1 (MQ=255)

                                                           aatagttattttttttttattttttt‑aTAAT‑TAAAAAAA‑AAAAAAA‑AAAAAAAACCCTTAAAAA‑‑TTAA‑AAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAc                                                               <  2:1299531/117‑1 (MQ=255)

                                                            cGTTATA‑TATTTTTTT‑TTTTTTT‑AT‑TTATAACAAAA‑AAAAAAA‑AAAAAATACCC‑‑ATAAA‑‑AAAT‑‑AA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                                         <  2:439344/128‑1 (MQ=255)

                                                              tttaattatttttttattttttT‑AT‑AT‑TAACAAAA‑AAAAAAA‑AAACAATCACCTT‑‑‑AA‑‑AAAT‑TAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                        <  2:1455786/122‑1 (MQ=255)

                                                              ttatttatttttttttttttttt‑tT‑AT‑TAAAAAAT‑AAAAAAA‑AAA‑AATACCCATT‑‑AA‑‑AAAT‑TAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                        <  2:956414/120‑1 (MQ=255)

                                                               tttatatattttttATTTTTTTAAT‑AT‑TAAAAAAA‑AAAAAAA‑AAAAAATAACC‑‑‑TAAA‑‑AAA‑‑AAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                                       <  2:1220735/120‑1 (MQ=255)

                                                               ttaaatatttttttattttttT‑AT‑AA‑T‑AAAAAA‑AAAAAAA‑AAAAAATACCCTT‑‑‑AA‑‑AAAT‑‑‑T‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatt                                                    <  2:386644/123‑1 (MQ=255)

                                                               taattattttttttATTT‑TTT‑AA‑AT‑AAAAAAAA‑AAAAAAA‑AAAAAAACCC‑‑‑ATAAA‑‑AAAT‑TAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                                      <  2:1884591/121‑1 (MQ=255)

                                                               attaatatttttttattttttT‑TT‑AT‑TAAAAAAA‑AAAAAAA‑AAAAAAACCAC‑‑ATAAA‑‑AAAT‑‑‑A‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                                      <  2:919537/123‑1 (MQ=255)

                                                                 atatATTTTTTTTTTTTTTT‑TT‑AT‑TTAAAAAT‑AAAAAAA‑AAAAAATACCC‑‑TTAAA‑‑AATT‑AAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                                      <  1:199456/125‑1 (MQ=255)

                                                                  c‑TATTTTTTTATTTGTTT‑AT‑CT‑TCACAAAT‑AAAAAAA‑AAACAATCCCC‑‑TTAAA‑‑AATT‑AAA‑AAAAAAAAAAAAAAATAA‑‑AAAAAAAAA‑‑ATATTTATTAAAATTACATATTAAAACACATTTTATTTTTa                                                >  2:1526049/1‑128 (MQ=255)

                                                                   atatttttttattttttT‑AT‑AT‑TAAAAAAA‑AAAAAAA‑AAAAAAAACCCAT‑‑‑AA‑‑AAAT‑‑‑T‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                                 <  2:180226/127‑1 (MQ=255)

                                                                    tATTTTTTTTTTTTTTT‑AT‑TT‑TAAAAAAT‑AAAAAAA‑AAAAAAAACCCTT‑‑‑AA‑‑AAAT‑TAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                                  <  2:260855/128‑1 (MQ=255)

                                                                     tttttttttttttttT‑AT‑TT‑TAAAAAAA‑AAAAAAA‑AAAAAAACCCCATAAAAATTAAAA‑AAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                                      <  1:1179874/127‑1 (MQ=255)

                                                                     ttttttttattttttt‑aT‑TT‑TCA‑AAAA‑AAAAAAA‑AAAAAATACCC‑‑ATAAA‑‑AAAT‑‑AA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                                <  1:1505827/127‑1 (MQ=255)

                                                                     atttttttattttttt‑AT‑AT‑TAAAAAAA‑AAAAAAA‑AAAAAATACCATT‑‑‑AA‑‑AAAT‑‑TA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                                <  1:321496/128‑1 (MQ=255)

                                                                      tttttttattttttt‑aT‑AT‑TAAAAAAA‑AAAAAAA‑AAAAAAACCAC‑ATAAAA‑‑ATTA‑AAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                                  <  1:434935/128‑1 (MQ=255)

                                                                      tttttttATTTTTTA‑AT‑AT‑AAAAAAAA‑AAAAAAA‑AAAAAAAACC‑‑TTT‑AA‑‑AAAT‑AAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                                <  2:1656391/128‑1 (MQ=255)

                                                                         ttttATTTTTTT‑AT‑CT‑TAAAAAAA‑AAAAAAA‑AAACAATCCACTT‑‑‑AA‑‑AAAT‑‑‑A‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                                           <  2:1782623/128‑1 (MQ=255)

                                                                          ttttttttttt‑tT‑CT‑TAAAAAAT‑TAAAAAA‑AAACAATTCACTTT‑‑‑A‑‑AAAT‑‑TA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                                           <  2:1378/128‑1 (MQ=255)

                                                                          tttATTTTTTT‑AA‑AT‑AAAAAAAT‑AAAAAAA‑AAACAATACCCTT‑‑‑AA‑‑AAAT‑‑AA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                                           <  2:1371173/128‑1 (MQ=255)

                                                                          tttATTTGTTT‑AT‑CT‑TCACAAAT‑AAAAAAA‑AAACAATCCCCTT‑‑‑AA‑‑AAAT‑TAA‑AAAAAAAAAAAAAAAAA‑‑TAAAAAAAAAATATTTTTATTAAAAATAAATATTATAAAAAATTTTATTTTTAaaaaaa                                          >  2:111847/1‑128 (MQ=255)

                                                                           ttATTTTTTT‑AT‑AA‑TAAAAAAT‑AAAAAAA‑AAAAAAATCCC‑‑TTAAA‑‑AAAT‑‑AA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                                           <  2:1837148/128‑1 (MQ=255)

                                                                           ttATTTTTTT‑AA‑CT‑TAAAAAAT‑AAAAAAA‑AAAAAAACCCCTT‑‑‑AA‑‑AAAT‑‑TA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                                          <  1:1484980/128‑1 (MQ=255)

                                                                             aTTTTTTT‑AT‑AT‑TAAAAAAA‑AAAAAAA‑AAACAATCCCC‑‑TTAAA‑‑AAAT‑AAA‑AAAAAAAAAAAAAAAACACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                                          <  2:1699675/128‑1 (MQ=255)

                                                                               ttttttatt‑CT‑TCA‑AAAT‑AAAAAAA‑AAATAAATACC‑CTTAAA‑‑AAAT‑‑‑‑‑AAAAAAAAAAAAAAAAAACTATAAACAAACTCTATTTCATAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                                      <  2:1037822/120‑1 (MQ=255)

                                                                                  ttt‑AT‑AT‑TAAAAAAT‑AAAAAAA‑AAAAAATACCCTT‑‑‑AA‑‑AAAT‑‑‑T‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGa                                  <  2:417857/128‑1 (MQ=255)

                                                                                  ttt‑AT‑AT‑TAAAAAAA‑AAAAAAA‑AAACAATCCCC‑ATAAAA‑‑ATAA‑AAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                                      <  2:631053/128‑1 (MQ=255)

                                                                                    ttttttaaaaaaaaaa‑aaaaaaa‑aaaaaATCCC‑‑‑TT‑AA‑‑AAAT‑TAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                                    <  1:1022345/116‑1 (MQ=255)

                                                                                    t‑AT‑CT‑TCACAAAT‑AAAAAAA‑AAACAATCCCCTT‑‑‑AA‑‑AAAT‑TAA‑AAAAAAAAAAAAAAAAAA‑‑AAAAACAAAAAATATTTGTAAAAATTCAATTTTAAACAAAATTTTATTTTTAAAATAAAATTTTGaaa                                >  1:1707253/1‑126 (MQ=255)

                                                                                      ttaattaaaaaaaa‑aaaaaaa‑aaaaaATCCC‑‑TTT‑AA‑‑AATT‑AAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTg                                   <  2:1436132/118‑1 (MQ=255)

                                                                                         ttataaaaaaT‑AAAAAAA‑AAAAAAAACCC‑‑ATAAA‑‑AAAT‑AAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTATATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGAc                                 <  2:1763014/121‑1 (MQ=255)

                                                                                          ataaacaAAA‑AAAAAAA‑AAAAAAATCC‑‑ATTAAA‑‑AATT‑AAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                                <  2:1505660/124‑1 (MQ=255)

                                                                                            ttaaaaaa‑aaaaaaa‑aaaaaaaACCCCTTAAAA‑‑AATA‑AAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                                <  1:1589698/124‑1 (MQ=255)

                                                                                            tCACAAAT‑AAAAAAA‑AAACAATCCCC‑‑TTAAA‑‑AATT‑AAA‑AAAAAAAAAAAAAAAACAAAAAAAACAAAATATATTAATAAAAATTACATATTAAACACAATTTTTTTTTTAAAAAAATATTTTgcaaaa                              >  1:1699675/1‑123 (MQ=255)

                                                                                             aaaaaaT‑AAAAAAA‑AAAAAAAAACCA‑‑TAAA‑‑AATTAAAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACata                              <  2:1950753/125‑1 (MQ=255)

                                                                                              aaaaaa‑aaaaaaa‑aaaaaATCCCATT‑‑‑AA‑‑AAAT‑T‑‑‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATACCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatata                         <  2:105607/126‑1 (MQ=255)

                                                                                                 aaT‑AAAAAAA‑AAAAAATCAAC‑‑TTAAA‑‑AATT‑AAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatata                         <  1:1680811/128‑1 (MQ=255)

                                                                                                           a‑aaaCAATCCCC‑‑TTAAA‑‑AATT‑AAA‑AAAAAAAAAAAAAAAAAAATAAAAACAAAATAAATTTATTAAAATTCCAAATTTAAACACATTTTTTTTTTAAAATAATATATTTACATAatatatataatata                >  2:1894514/1‑122 (MQ=255)

                                                                                                              aaCAATCCCC‑‑TTAAA‑‑AATT‑AAA‑AAAAAAAAAAAAAAAAAA‑‑AAAAACAAAATCTTTTTATTAAAATACCATTTTAAACCAAATTTTTTTTTTAAAATAAAATATTGAAATAATATATAAataataatta            >  2:1491870/1‑124 (MQ=255)

                                                                                                                     tccccataaa‑‑aattaaaa‑aaAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAAtatatata          <  1:1593410/122‑1 (MQ=255)

                                                                                                                     acaacttaaa‑‑aatt‑aaa‑aaAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATataa         <  2:1627655/123‑1 (MQ=255)

                                                                                                                      aactttAAA‑‑AATTAAAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATataa         <  2:830069/125‑1 (MQ=255)

                                                                                                                         cttATA‑‑AATT‑AAATAAAAATATAAAAAATAAACTTAAAAGAAACTCTATTTCTTAAAATTCCCTATTTTACCACATTTTATTTTTAATATAAGATATTGACATAATATATATCTAATATATATAATAc      <  1:1547697/127‑1 (MQ=255)

TAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑AT‑CT‑TCACAAAT‑AAAAAAA‑AAACAATCCCCTTTTAAA‑‑AAAT‑AAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATA  >  CP016816/202371‑202616

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.