BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP016816	202,494	0	A	T	42.5%	94.0 / 125.3	174	intergenic (+272/‑403)	JCVSYN2_00840/JCVSYN2_00845	hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand): ref base A (26/74); new base T (40/34); total (66/108)
Fisher's exact test for biased strand distribution p-value = 2.52e-04
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 187 total aligned reads displayed.

TAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAA‑AAACAATCCCCTTTTAAA‑‑AAAT‑AAA‑AAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATATTG  >  CP016816/202371‑202619

  ataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTAATC‑TATTTATTTATTTCTTTATATTCACAAAT‑AAAAAAA‑AAAAAAAACAC‑‑taaaa‑‑aaat‑aaa‑aaaa                                                                                                                        >  1:350486/1‑128 (MQ=255)

   taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAA‑AAACAATCAAC‑‑TTAAA‑‑AATT‑aaa‑aaaaa                                                                                                                       >  2:1680811/1‑128 (MQ=255)

    atagTTAAGGTTAATTAAAATACCAAAAAATTAATAAATCTTAAAATGTATAACCTCGTGATC‑TATTTTTTTAATTGTTTATCTTCAAAAAT‑AAAAAAA‑AAACAATCCCC‑‑TTAAA‑‑AATT‑aaa‑aaaaa‑a                                                                                                                     <  2:1371676/126‑1 (MQ=255)

      agTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAA‑AAAAAATCACC‑‑TTAAA‑‑AATT‑aaa‑aaaaa‑aaa                                                                                                                   >  2:456729/1‑128 (MQ=255)

       gTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATC‑TATTTTTTTATTTTTTTATCTTCACAAAT‑AAAAAAA‑AAACAATAAC‑‑AATAAA‑‑AAAT‑aaa‑aaaaa‑aaaa                                                                                                                  >  2:1843420/1‑128 (MQ=255)

       gTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAA‑AAACAAACCCC‑‑TTAAA‑‑AATT‑aaa‑aaaaa‑aaaa                                                                                                                  >  1:1666529/1‑128 (MQ=255)

        ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAA‑AAACAAACAAC‑‑TTAAA‑‑AAAT‑aaa‑aaaaa‑aaaa                                                                                                                  >  2:172456/1‑128 (MQ=255)

        ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAA‑AAACAATCCCC‑‑ATAAA‑‑AAAT‑aaa‑aaaaa‑aaaaa                                                                                                                 >  1:1262028/1‑128 (MQ=255)

        ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTACACAAAT‑‑AAAAAA‑AAACAATCCAC‑‑TTAAA‑‑AATT‑aaa‑aaaaa‑aaaaaa                                                                                                                >  1:386644/1‑128 (MQ=255)

        ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTATTTTATTTGTTTATCTTCACAAAT‑AAAAAAA‑AAACAAACAAC‑‑‑TAAA‑‑AAAT‑aaa‑aaaaa‑aaaaaa                                                                                                                >  2:1947672/1‑128 (MQ=255)

         taattttaattaaAAAAACAAAAAATTAAAAAATATAAAAAATTATATACTAGTTATT‑TATTTTTTTATTTTTTTATATTAACAAAA‑AAAAAAA‑AAACAATCCCC‑‑TTAAA‑‑AATT‑aaa‑aaaaa‑aaaaaa                                                                                                                <  2:1157315/123‑1 (MQ=255)

         tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAA‑AAAAAATCAC‑‑AATAAA‑‑AATT‑aaa‑aaaaa‑aaaaaa                                                                                                                >  1:929048/1‑128 (MQ=255)

         tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAA‑AAACAATCCCC‑‑TTAAA‑‑AATT‑aaa‑aaaaa‑aaaaaa                                                                                                                >  2:234450/1‑128 (MQ=255)

         tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAA‑AAACAATCCCC‑‑TTAAA‑‑AATT‑aaa‑aaaaa‑aaaaaaa                                                                                                               >  2:1586800/1‑128 (MQ=255)

         tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCACGTGATC‑TATTTTTTTATTATTTTATCTTCACAAAT‑AAAAAAA‑AAAAAAAACCATT‑‑‑AA‑‑AAAT‑aaa‑aaaaa‑aaaaaaa                                                                                                               >  1:830069/1‑128 (MQ=255)

          aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATCATCGTGATC‑TATTTTTTTATTAATTTATCTTCACAAAT‑AAAAAAA‑AAAAAAAAAAC‑‑‑TAAA‑‑AAAT‑taa‑aaaaa‑aaaaaaaa                                                                                                              >  1:1378/1‑128 (MQ=255)

          aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATC‑TATTATTTTATTAGTTTATATTAACAAAT‑AAAAAAA‑AAACAAACAAATAaaaaa‑‑aaaa‑aaa‑aaaaa‑aaaaa                                                                                                                 >  1:564032/1‑128 (MQ=255)

          aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAA‑AAACAATCCCCTT‑‑‑AA‑‑AAAT‑aaa‑aaaaa‑aaaaaaaa                                                                                                              >  2:1520025/1‑128 (MQ=255)

          aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAA‑AAACAAAACCAAT‑‑‑AA‑‑AAAT‑aaa‑aaaaa‑aaaaaaaa                                                                                                              >  1:430000/1‑128 (MQ=255)

          aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAAAGTAGATCATCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAA‑AAACAAACACC‑‑TAAAA‑‑AAAT‑aaa‑aaaaa‑aaaaaaa                                                                                                               >  1:1516303/1‑128 (MQ=255)

           aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAA‑AAACAATCAC‑‑AATAAA‑‑AATT‑aaa‑aaaaa‑aaaaaaaa                                                                                                              >  1:227837/1‑128 (MQ=255)

           aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAA‑AAACAAACCCCTT‑‑‑AA‑‑AAAT‑aaa‑aaaaa‑aaaaaaaaa                                                                                                             >  1:986532/1‑128 (MQ=255)

           aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATATTAAAAAAT‑AAAAAAA‑AAACAA‑‑ACAAATTAAA‑‑AATT‑aaa‑aaaaa‑aaaaaaaa                                                                                                              >  1:1372762/1‑128 (MQ=255)

           aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATACTCTTGATC‑TATTTTTTTATTTGTTTATCTTCAAAAAT‑AAAAAAA‑AAAAAAT‑‑AAAATTAAA‑‑AATT‑aaa‑aaaaa‑aaaaaaaa                                                                                                              >  1:1156134/1‑128 (MQ=255)

            ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAATAAACAATCCCC‑‑ATAAA‑‑AATT‑aaa‑aaaaa‑aaaaaaaa                                                                                                              >  1:224989/1‑128 (MQ=255)

            ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAA‑AAACAATCCCC‑‑TTAAA‑‑AATT‑aaa‑aaaaa‑aaaaaaaaa                                                                                                             >  1:1659166/1‑128 (MQ=255)

            ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAA‑AAACAATCCCC‑‑TTAAA‑‑AATT‑aaa‑aaaaa‑aaaaaaaaa                                                                                                             >  1:650679/1‑128 (MQ=255)

            atttaattaaAATAACAAATAATTTATAATTAATATAATTTAAATACTCGTTTTA‑TATTTTTTTTTTTTTTTATATTAACAAAA‑AAAAAAA‑AAACAAACCCC‑‑ATAAA‑‑AATT‑aaa‑aaaaa‑aaaaaaaaa                                                                                                             <  2:364313/126‑1 (MQ=255)

             ttactataaAATACCAAAAAATTTATAAATGTTATTATCTCTCTCCCCG‑GTTCTTATTTTTTTTATTTTTTTTCTTAAAAAAA‑AAAAAAA‑AAAAAAACCCC‑‑TTAAA‑‑AATT‑aaa‑aaaaa‑aaaaaaaaaa                                                                                                            <  1:1011096/122‑1 (MQ=255)

             gTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAA‑AAACAATCCCC‑‑TTAAA‑‑AATT‑aaa‑aaaaa‑aaaaaaaaaa                                                                                                            >  1:247072/1‑128 (MQ=255)

              ttaattaaAAAAAAATAAAATAAATAAATTTTATAAATTATATACACGTGTTT‑TATTTTTTTTTTTTTTTAAATTAACAAAA‑AAAAAAA‑AAAAAAATCCC‑CTTAAA‑‑AATT‑aaa‑aaaaa‑aaaaaaaaaa                                                                                                            <  2:1645825/128‑1 (MQ=255)

               taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAA‑AAAAAATCAC‑‑ATTAAA‑‑AATT‑aaa‑aaaaa‑aaaaaaaaaaaa                                                                                                          >  2:1561882/1‑128 (MQ=255)

               taattaaAATACCAAAAACTTAATAATTATTATAATGTAGATCCTCTTGATC‑TATTTTATTATATTATTATCTTAAAAAAT‑AAAAAAA‑AAAAAATAAAC‑‑TTAAA‑‑AAAT‑aaa‑aaaaa‑aaaaaaaaaaaa                                                                                                          >  2:438691/1‑128 (MQ=255)

                aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAA‑AAACAATCCCC‑‑TTAAA‑‑AATT‑aaa‑aaaaa‑aaaaaaaaaaaaa                                                                                                         >  1:1480540/1‑128 (MQ=255)

                aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAA‑AAAAAAAACC‑‑ATTAAA‑‑AATT‑aaa‑aaaaa‑aaaaaaaaaaaaa                                                                                                         >  1:968105/1‑128 (MQ=255)

                 attaaAATACCATAAACTTAATAATTCTTATAATGTATATCCTCTTGATC‑TATTATTTTATTTGTTTATCTTCACAAAT‑AAAAAAA‑AAACAAACCC‑‑ATTAAA‑‑AATT‑aaa‑aaaaa‑aaaaaaaaaaaaaa                                                                                                        >  2:1179874/1‑127 (MQ=255)

                   taaAATACCATAAAAATAATAATTATTATAATTTATATACTCGTTATC‑TATTTTTTTATTTTTTTATATTCAAAAAT‑AAAAAAA‑AAACAAAACCC‑‑TTAAA‑‑AATT‑aaa‑aaaaa‑aaaaaaaaaactaaaa                                                                                                      <  2:1837542/128‑7 (MQ=255)

                    aaaaaaACATAAAAATTATAATTATTATAATTTATATACTTTTGTTA‑TATTTTTTTATTTTTTTATCTTAACAAAT‑AAAAAAA‑AAAAAATCCCC‑‑TTAAA‑‑AATT‑AAA‑AAAAA‑AAAAAAAAAAAAACTaa                                                                                                     <  2:1797177/128‑1 (MQ=255)

                    aaaaTACAAAAAACTTATAATTTATTATTAAGAATATCCTCTTGATA‑TATTTTTTTATTTGTTTATAATCACAAAT‑AAAAAAA‑AAACAATCCCC‑‑TTAAA‑‑AATT‑aaa‑aaaaa‑aaaaaaaaactaaaaac                                                                                                     <  2:631363/128‑9 (MQ=255)

                     aaaTAACATAAAATTAAAAATAATTAAAATTTAGAACCTCGTTATC‑TATTTTTTTATTTTTTTAACTTCAAAAAT‑AAAAAAA‑AAACAATCCCC‑‑TTAAA‑‑AATT‑aaa‑aaaaa‑aaaaaaaaaaactaaaaa                                                                                                    <  2:234050/128‑8 (MQ=255)

                      aaaaCCAAAAAATTAAAAATATATAAAATTTATATCCTCCGTCTC‑TATTTTTTTTTTTTTTTTTATTTACAAAA‑AAAAAAA‑AAAAAATTCCCCTT‑‑AA‑‑AATT‑AAA‑AAAAA‑AAAAAAAAAAAAACTaaaa                                                                                                   <  2:1198401/125‑1 (MQ=255)

                      aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAA‑AAACAATCCCC‑‑TTAAA‑‑AATT‑aaa‑aaaaa‑aaaaaaaaaaaaaaaaaa                                                                                                    >  1:1754854/1‑123 (MQ=255)

                      aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAA‑AAACAATCCCC‑‑TTAAA‑‑AATT‑Aaa‑aaaaa‑aaaaaaaaaaaaaaaaaaa                                                                                                   >  1:1865492/1‑128 (MQ=255)

                      aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAA‑AAACAATCCC‑‑ATTAAA‑‑AATT‑Aaa‑aaaaa‑aaaaaaaaaaaaaaaaaaa                                                                                                   >  2:1615939/1‑128 (MQ=255)

                         aaaaaaaaaaaaataaaTCTTATAAATTATATCATCTTTATA‑TATTTTTTTATTTTTTTATATTAACAAAT‑AAAAAAA‑AAA‑AATCCCCTT‑‑‑AA‑‑AAAT‑TAA‑AAAAA‑AAAAAAAAAAAAACTAAaaacaaa                                                                                              <  2:693429/117‑1 (MQ=255)

                           cATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAA‑AAACAATCCCC‑‑TTAAA‑‑AATT‑AAA‑AAAAA‑AAAAAAAAACaaaaaaaaaaaaaa                                                                                              >  1:183768/1‑128 (MQ=255)

                             taaaaataataataaTTATAAATTATATAGTAGTTATA‑TATTTTTTTAATTTTTTATATTAAAAAAA‑AAAAAAA‑AAAAAATCCCCTT‑‑‑AA‑‑AAAT‑‑TT‑AAAAA‑AAAAAAAAAAAAACTAAAAACAAActct                                                                                          <  2:1953282/122‑1 (MQ=255)

                             tAAACATTATAAATTTTTTAATTTTCATACTCGGTATC‑TATTTTTTTATTTTTTTATCTTCAAAAAT‑AAAAAAA‑AAAAAAACCCCTT‑‑‑AA‑‑AAAT‑‑‑T‑AAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                         <  1:1564429/128‑1 (MQ=255)

                                aattAATAAATCTTATAATTTATAACCTAGTTATT‑TATTTTTTTATTTTTTTATTTTAAAAAAA‑AAAAAAA‑AAAAAATACCC‑‑TTAAA‑‑AATT‑AAA‑AAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                         <  2:1597478/126‑1 (MQ=255)

                                   taataaTTTATATAATTTATATTCTTGTTTTT‑TATTTTTTTATTTGTTTATTTTAATAAAA‑TAAAAAA‑AAAAAATCCCCTTT‑‑‑A‑‑AAAT‑‑‑T‑AAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCtt                                                                                   <  1:179432/128‑1 (MQ=255)

                                    aataaattataaaaTTTATATCCACGTTTTA‑TATTTTTTTATTTTTTTAACTACAAAAAA‑AAAAAAA‑AAACAAACCCC‑‑TTAAA‑‑AAAT‑‑‑A‑AAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCtt                                                                                   <  2:1666529/116‑1 (MQ=255)

                                      aaatTCTTATAATTTATATACTTTTTATA‑TTTTTTTTTATTTGTTTATCTTAACAAAT‑AAAAAAA‑AAA‑AATCCCCTT‑‑‑AA‑‑AAAT‑TAA‑AAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTaa                                                                                 <  2:1016880/127‑1 (MQ=255)

                                                aaTTTATATACTCGTTATA‑TATTTTTTTATTTTTTTATATTAAAAAAT‑AAAAAAA‑AAAAAATCCCCTT‑‑‑AA‑‑AAAT‑‑‑T‑AAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtatt                                                                      <  2:686040/128‑1 (MQ=255)

                                                  tttataTCCTCGTTATA‑TATTTTTTTATTTTTTTATCTTAAAAAAT‑AAAAAAA‑AAA‑AATACCCTT‑‑‑AA‑‑AAAT‑‑‑T‑AAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATtata                                                                   <  2:1670407/123‑1 (MQ=255)

                                                   gtacatacgagTGATA‑TAATTTTTTATTTTTTTATCATAAAAAAA‑AAAAAAA‑AAACAATCCCC‑‑ATAAA‑‑AAAT‑‑‑‑‑AAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATtata                                                                   <  2:1275591/118‑1 (MQ=255)

                                                     atatacTCGTTATA‑TATTTTTTTATTTTTTTATATTTAAAAAA‑AAAAAAA‑AAAAAAACCCC‑‑ATAAA‑‑AAAT‑AAA‑AAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtattat                                                                    <  2:523266/123‑1 (MQ=255)

                                                             ttttatttatttttttattttttTATATTAAAAAAT‑AAAAAAA‑AAAAAATCCCATT‑‑‑AA‑‑AAAT‑‑TA‑AAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                           <  2:1357327/121‑1 (MQ=255)

                                                              tttaattatttttttattttttTATATTAACAAAA‑AAAAAAA‑AAACAATCACCTT‑‑‑AA‑‑AAAT‑TAA‑AAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                           <  2:1455786/122‑1 (MQ=255)

                                                              ttatttatttttttttttttttttTATTAAAAAAT‑AAAAAAA‑AAA‑AATACCCATT‑‑AA‑‑AAAT‑TAA‑AAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                           <  2:956414/120‑1 (MQ=255)

                                                               taattattttttttATTT‑TTTAAATAAAAAAAA‑AAAAAAA‑AAAAAAACCC‑‑‑ATAAA‑‑AAAT‑TAA‑AAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                                         <  2:1884591/121‑1 (MQ=255)

                                                               gtttttatttttttattttttAATTTTAACAAAA‑AAAAAAA‑AAAAAAACCCC‑‑TTAAA‑‑AATT‑AAA‑AAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                           <  2:1093760/123‑1 (MQ=255)

                                                               attaatatttttttattttttTTTATTAAAAAAA‑AAAAAAA‑AAAAAAACCAC‑‑ATAAA‑‑AAAT‑‑‑A‑AAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                                         <  2:919537/123‑1 (MQ=255)

                                                                 atatATTTTTTTTTTTTTTTTTATTTAAAAAT‑AAAAAAA‑AAAAAATACCC‑‑TTAAA‑‑AATT‑AAA‑AAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                                         <  1:199456/125‑1 (MQ=255)

                                                                  tttttttttttatttttttaTTAACAAAAAT‑AAAAAAA‑AAAAAAACCC‑‑‑ATAAA‑‑AAAT‑‑‑‑‑‑TAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                                   <  2:1052230/124‑1 (MQ=255)

                                                                  c‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAA‑AAACAATCCCC‑‑TTAAA‑‑AATT‑AAA‑AAAAA‑AAAAAAAAAATAA‑‑AAAAAAAAA‑‑ATATTTATTAAAATTACATATTAAAACACATTTTATTTTTa                                                   >  2:1526049/1‑128 (MQ=255)

                                                                   tttttttttttttttttTAACTTAAAAAAA‑AAAAAAA‑AAAAAATACCC‑TTAAAA‑‑ATTA‑AAA‑AAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttat                                                        <  2:1328869/125‑1 (MQ=255)

                                                                    tttttttttatttttttaAATTCAAAAAA‑AAAAAAA‑AAAAAAACCCC‑‑TTAAA‑‑AAAT‑‑‑A‑AAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                                    <  1:1843420/126‑1 (MQ=255)

                                                                    tATTTTTTTTTTTTTTTATTTTAAAAAAT‑AAAAAAA‑AAAAAAAACCCTT‑‑‑AA‑‑AAAT‑TAA‑AAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                                     <  2:260855/128‑1 (MQ=255)

                                                                     tttttttttttttttTATTTTAAAAAAA‑AAAAAAA‑AAAAAAACCCCATAAAAATTAAAA‑AAA‑AAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                                         <  1:1179874/127‑1 (MQ=255)

                                                                     ttttttttatttttttaTTTTCA‑AAAA‑AAAAAAA‑AAAAAATACCC‑‑ATAAA‑‑AAAT‑‑AA‑AAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                                   <  1:1505827/127‑1 (MQ=255)

                                                                      tttttttatttttttaTATTAAAAAAA‑AAAAAAA‑AAAAAAACCAC‑ATAAAA‑‑ATTA‑AAA‑AAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                                     <  1:434935/128‑1 (MQ=255)

                                                                      tttttttATTTTTTAATATAAAAAAAA‑AAAAAAA‑AAAAAAAACC‑‑TTT‑AA‑‑AAAT‑AAA‑AAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                                   <  2:1656391/128‑1 (MQ=255)

                                                                       ttttttATT‑‑TTTATTATTACAAAA‑AAAAATA‑AAAAAAAACCC‑TTTAAA‑‑ATAT‑AAA‑AAAAATAAAAAAAAAAAAACTAAATACAAACTCTATTTCTTAAAATTCCCTATTATACAACATTTTATTTTTa                                                   <  2:1299179/128‑1 (MQ=255)

                                                                         ttttttttttttATATTAACAAAT‑AAAAAAA‑AAAAAATTCACTT‑‑‑AA‑‑AAAT‑‑‑T‑AAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                                              <  1:1610217/128‑1 (MQ=255)

                                                                         ttttATTTTTTTATCTTAAAAAAA‑AAAAAAA‑AAACAATCCACTT‑‑‑AA‑‑AAAT‑‑‑A‑AAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                                              <  2:1782623/128‑1 (MQ=255)

                                                                         ttttATTTGTTTATCTTCACAAAT‑AAAAAAA‑AAACAATCCCC‑‑TTAAA‑‑AATT‑AAA‑AAAAA‑AAAAAAAAAAAAA‑‑AAAAACAAAATATATTAAATAAAATTCAATATAAAAAAAAATTTTATTTTTAAAAt                                               >  2:1280637/1‑128 (MQ=255)

                                                                          tttATTTGTTTATCTTCACAAAT‑AAAAAAA‑AACCAATCCCC‑‑‑TAAA‑‑AAAT‑TAA‑AAAAA‑AAAAAAAAAAAA‑‑TAAAAAAAAAAACAATTTCATAAAAATCACAATAAAACCCCAATTAATTTTTAAAATaa                                             >  2:415279/1‑128 (MQ=255)

                                                                           ttATTTTTTTAACTTAAAAAAT‑AAAAAAA‑AAAAAAACCCCTT‑‑‑AA‑‑AAAT‑‑TA‑AAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                                             <  1:1484980/128‑1 (MQ=255)

                                                                            ttttttttTATCTTAAAAAAT‑AAAAAAA‑AAACAATCCCCTT‑‑‑AA‑‑AAAT‑‑‑T‑AAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                                           <  2:1403072/126‑1 (MQ=255)

                                                                            tATTTTTTTAAATTAAAAAAA‑AAAAAAA‑AAAAAAAACCCTT‑‑‑AA‑‑AAAT‑‑TA‑AAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAg                                            <  2:1834357/128‑1 (MQ=255)

                                                                                 ttttttaaaaaaaaaa‑aaaaaaa‑aaaaaATCCC‑‑‑TT‑AA‑‑AAAT‑TAA‑AAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                                       <  1:1022345/116‑1 (MQ=255)

                                                                                   ttaatttaaaaaaa‑aaaaaaa‑aaaaaATCCC‑‑TTT‑‑A‑‑AAAT‑T‑A‑AAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGAc                                    <  2:510963/118‑1 (MQ=255)

                                                                                   ttATATTAAAAAAA‑AAAAAAA‑AAAAAATACCC‑‑ATAAA‑‑AAAT‑AAA‑AAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                                       <  2:225618/128‑1 (MQ=255)

                                                                                    tATCTTCACAAAT‑AAAAAAA‑AAACAATCCCCTT‑‑‑AA‑‑AAAT‑TAA‑AAAAA‑AAAAAAAAAAAAA‑‑AAAAACAAAAAATATTTGTAAAAATTCAATTTTAAACAAAATTTTATTTTTAAAATAAAATTTTGaaa                                   >  1:1707253/1‑126 (MQ=255)

                                                                                     atattaaaaaaa‑aaaaaaa‑aaaaaaaACCC‑‑TTAAA‑‑AAAT‑AAA‑AAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGa                                     <  1:234450/120‑1 (MQ=255)

                                                                                      ttataaaaaaT‑AAAAAAA‑AAAAAAAACCC‑‑ATAAA‑‑AAAT‑AAA‑AAAAA‑AAAAAAAAAAAAACTAAAAACAAACTATATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGAc                                    <  2:1763014/121‑1 (MQ=255)

                                                                                      tCTTCAAAAAT‑AAAAAAA‑AAAAAAAACCCTTT‑‑‑A‑‑AAAT‑TAA‑AAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                                   <  2:213901/128‑1 (MQ=255)

                                                                                       ataaacaAAA‑AAAAAAA‑AAAAAAATCC‑‑ATTAAA‑‑AATT‑AAA‑AAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                                   <  2:1505660/124‑1 (MQ=255)

                                                                                       aataaaaaaa‑aaaaaaa‑aaaaaATCCCC‑‑TTAAA‑‑AATT‑AAA‑AAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                                   <  2:170357/122‑1 (MQ=255)

                                                                                         ttaaaaaa‑aaaaaaa‑aaaaaaaACCCCTTAAAA‑‑AATA‑AAA‑AAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                                   <  1:1589698/124‑1 (MQ=255)

                                                                                         tCACAAAT‑AAAAAAA‑AAACAATCCCC‑‑TTAAA‑‑AATT‑AAA‑AAAAA‑AAAAAAAAAAACAAAAAAAACAAAATATATTAATAAAAATTACATATTAAACACAATTTTTTTTTTAAAAAAATATTTTgcaaaa                                 >  1:1699675/1‑123 (MQ=255)

                                                                                            aaaaT‑AAAAAAA‑AAACAATCCCCAT‑‑‑AA‑‑AAAT‑‑‑T‑AAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatat                           <  2:1806078/127‑1 (MQ=255)

                                                                                              aaT‑AAAAAAA‑AAAAAATCAAC‑‑TTAAA‑‑AATT‑AAA‑AAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatata                            <  1:1680811/128‑1 (MQ=255)

                                                                                                        a‑aaaCAATCCCC‑‑TTAAA‑‑AATT‑AAA‑AAAAA‑AAAAAAAAAAAAAATAAAAACAAAATAAATTTATTAAAATTCCAAATTTAAACACATTTTTTTTTTAAAATAATATATTTACATAatatatataatata                   >  2:1894514/1‑122 (MQ=255)

                                                                                                           aaCAATCCCC‑‑TTAAA‑‑AATT‑AAA‑AAAAA‑AAAAAAAAAAAAA‑‑AAAAACAAAATCTTTTTATTAAAATACCATTTTAAACCAAATTTTTTTTTTAAAATAAAATATTGAAATAATATATAAataataatta               >  2:1491870/1‑124 (MQ=255)

                                                                                                                aaaaaaccctta‑‑aaaa‑aaa‑aaaaa‑aaaaaaaaaaaaaCTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatatat              <  2:616471/117‑1 (MQ=255)

                                                                                                                  acaacttaaa‑‑aatt‑aaa‑aaAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATataa            <  2:1627655/123‑1 (MQ=255)

                                                                                                                   aactttAAA‑‑AATTAAAA‑AAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATataa            <  2:830069/125‑1 (MQ=255)

                                                                                                                      cttATA‑‑AATT‑AAATAAAAA‑TATAAAAAATAAACTTAAAAGAAACTCTATTTCTTAAAATTCCCTATTTTACCACATTTTATTTTTAATATAAGATATTGACATAATATATATCTAATATATATAATAc         <  1:1547697/127‑1 (MQ=255)

                                                                                                                              aaat‑taa‑aaaAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTACATATTATACAACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATATTg  <  2:1461265/128‑1 (MQ=255)

TAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAA‑AAACAATCCCCTTTTAAA‑‑AAAT‑AAA‑AAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATATTG  >  CP016816/202371‑202619

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`