BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP016816	= 202486	212 (0.070)	434 (0.140)	92/250	49.6	64.4%	intergenic (+264/‑411)	JCVSYN2_00840/JCVSYN2_00845	hypothetical protein/lipoprotein
*	?	CP016816	202490 =	267 (0.090)	434 (0.140)	92/250	49.6	64.4%	intergenic (+268/‑407)	JCVSYN2_00840/JCVSYN2_00845	hypothetical protein/lipoprotein
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 607 total aligned reads displayed.

ATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTA‑TTTGTTT‑ATCT‑TCACAAAT‑AAAAAAAAAACAATCCCCTTTTAAAA‑AAT‑A‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATAT  >  CP016816/202370‑202617

ataataGAGTTAAGGTAAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTA‑TTTGTTT‑ATCT‑TCACAAAT‑AAAAAAAAAACAATCACCtt‑‑‑aaa‑aat‑a‑aaaa                                                                                                                       >  2:6473670/1‑128 (MQ=255)

 taataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTA‑TTTTTTTA‑TTTGATT‑ATCT‑TCACAAAT‑AAAAAAAAAACAAACACCTAaaaaaa‑aaa‑a‑aa                                                                                                                         >  1:6676834/1‑128 (MQ=255)

 taataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTA‑TTTGTTT‑ATCT‑TCACAAAT‑AAAAAAAAAACAATCACC‑‑ttaaaa‑att‑a‑aaaa                                                                                                                       >  2:5284117/1‑128 (MQ=255)

  aataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTA‑TTTGTTT‑ATCT‑TCACAAAT‑AAAAAAAAAACAAACCC‑‑ATtaaaa‑aat‑a‑aaaaa                                                                                                                      >  2:2203305/1‑128 (MQ=255)

      gagTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTA‑TTTGTTT‑ATCT‑TCACAAAT‑AAAAAAAAAACAATACCC‑‑TTAAAA‑ATT‑a‑aaaaaaaaa                                                                                                                  >  2:4477703/1‑128 (MQ=255)

         ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TATATATA‑TTAGATT‑ATCT‑ACACAAAT‑AAAAAAAAAACAATAAACTT‑‑‑AAA‑AAT‑a‑aaaaaaaaaaaaa                                                                                                              >  1:2357986/1‑128 (MQ=255)

          tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTA‑TTTGTTT‑ATCT‑TCACAAAT‑AAATAAAAAACAATCCCCTTAAAAAT‑TAT‑a‑aataataaaaa                                                                                                                >  2:5643114/1‑128 (MQ=255)

          tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTA‑TTTGTAT‑ATCT‑TCACAAAT‑AAAAAAAAAACAATCAC‑‑‑ATAAAA‑AAT‑t‑aaaaaaaaaaaaaa                                                                                                             >  2:2816427/1‑128 (MQ=255)

          tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTATTA‑TTTGTTT‑ATCT‑TCACAAAT‑AAAAAAAAAACAATACCC‑‑TAAAAA‑AAT‑a‑aaaaaaaaaaaaa                                                                                                              >  2:3232493/1‑128 (MQ=255)

          tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTAATCAA‑TTTTTTTA‑TTTTTAT‑ATCT‑ACACAAAT‑AAAAAAAAAAAAATAAAC‑‑‑AAAAA‑AAT‑a‑aaaaaaaaaaaaaa                                                                                                             >  2:83051/1‑128 (MQ=255)

           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTATATCTA‑TTATAATA‑TAAGATT‑AACT‑ACACAAAT‑AAAAAAAAAACAAAACCCATaaaaaa‑aaa‑a‑aaaaaaaaaaaa                                                                                                               >  2:3914047/1‑128 (MQ=255)

             tgTTAAATAAAAATCCATAAAATTAAAATTTATTATAATTTTTATCCTCGGTTTATT‑TTTTTTTT‑TTTTTTT‑TTAT‑TCAAAAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAAA‑ATT‑a‑aaaaaaaaaaaaaaaa                                                                                                           <  2:596634/127‑1 (MQ=255)

             ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTA‑TTTGTTT‑ATCT‑TCACAAAT‑AAAAAAAAAACAATCCC‑‑‑ATAAAA‑AAT‑t‑aaaaaaaaaaaataaaa                                                                                                          >  1:3510141/1‑128 (MQ=255)

             ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTA‑TTTGTTT‑ATCT‑TCACAAAT‑AAAAAAAAAACAATCACC‑‑TTAAAA‑ATT‑a‑aaaaaaaaaaaaaaaa                                                                                                           >  1:6283280/1‑128 (MQ=255)

             ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTA‑TTTGTTT‑ATCT‑TCACAAAT‑AAAAAAAAAAAAA‑‑AAAAAATAAAA‑ATT‑a‑aaaaaaaaaaaaaaaa                                                                                                           >  1:1762621/1‑128 (MQ=255)

              gTTTATTAAAAAAAAATATATTTAATAATTATTATATTTTTTTTACTCTTTTTTTA‑TTTTTTTT‑TTTTTTT‑TTTT‑TAAAAAAT‑AAAAAAAAAAAAAACCCC‑‑TTAAAA‑TTT‑a‑aaaaaaaaaaaaaaaaa                                                                                                          <  2:1455991/128‑1 (MQ=255)

              gTTAATTAAAAAAACATAAAATTAAAAATTATTTTAATTTATTTTATATTTTTTTA‑TTTTTTTA‑TTTTTTT‑ATAT‑TTAAAAAT‑AAAAAAAAAAAAATACAC‑‑TTAAAA‑ATT‑a‑aaaaaaaaaaaaaaaaa                                                                                                          <  2:3529469/128‑1 (MQ=255)

               ttaattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTA‑TTTTTTTA‑ATTGTTT‑ATCT‑ACACAAAT‑AAAAAAAAAACAATCAACTT‑‑‑AAA‑AAT‑a‑aaaaaaaaaaaaaaaaaaa                                                                                                        >  1:592320/1‑128 (MQ=255)

                taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTA‑TTTGTTT‑ATCT‑TCACAAAT‑AAAAAAAAAACAAACCCC‑‑‑TAAAA‑AAT‑a‑aaaaaaaaaaaaaaaaaaaa                                                                                                       >  2:1614854/1‑128 (MQ=255)

                taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATACTCGTGATCTA‑TTTTTTTA‑TTTGTTT‑ATCT‑TCACAAAT‑AAAAAAAAAACAA‑‑‑ACAAAAAAAA‑AAT‑t‑aaaaaaaaaaaaaaaaaaaa                                                                                                       >  1:369992/1‑128 (MQ=255)

                 aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTA‑TTTGTTT‑ATCT‑TCACAAAT‑AAAAAAAAAAAAATACCC‑‑TTAAAA‑ATT‑a‑aaaaaaaaaaaaaaaaaaaa                                                                                                       >  1:5234631/1‑128 (MQ=255)

                 aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTA‑TTTATTT‑ATCT‑TCACAAAT‑AAAAAAAAAACAATCCC‑‑ATTAAAA‑ATT‑a‑aaaaaaaaaaaaaaaaaaaa                                                                                                       >  2:5583306/1‑128 (MQ=255)

                  attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTA‑TTTGTTT‑ATCT‑TCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAA‑ATT‑a‑aaaaaaaaaaaaaaaaaaaaa                                                                                                      >  2:5851251/1‑127 (MQ=255)

                  attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTA‑TTTGTTT‑ATCT‑TCACAAAT‑AAAAAAAAAACAATCCC‑‑ATTAAAA‑ATT‑a‑aaaaaaaaaaaaaaaaaaaaa                                                                                                      >  1:5534223/1‑127 (MQ=255)

                   ttaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTA‑TTTGTTT‑ATCT‑TCACAAAT‑‑AAAAAAAAACAATCCCC‑‑TTAAAA‑ATT‑a‑aaaaaaaaaaaaaaaaaaaaaaa                                                                                                    >  2:6673186/1‑125 (MQ=255)

                   ttaaAATACCATAAACTTAATAATTATTATAATGTAGATACTCTTTATCTA‑TTTTTTTA‑TTTTTTT‑ATAT‑TCAAAAAT‑AAAAAAAAAACAATCAAC‑‑TTAAAA‑ATT‑a‑aaaaaaaaaaaaaaaaaaaaaa                                                                                                     >  1:246375/1‑126 (MQ=255)

                     aaaaataaaaaaaaTTAATAAATTTTATAATTTATATTCACGTTTTATA‑TTTTTTTA‑TTTTTTTAATTT‑AAAAAAAA‑AAAAAAAAAACAATCCCC‑‑TTAAAA‑ATT‑A‑AAAAAAAAAAAAAAAAAAAACTa                                                                                                    <  2:5711325/118‑1 (MQ=255)

                     aaaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTATA‑TATGTTT‑ATCT‑TCACAAAT‑AAAAAAAAAACAATCCC‑‑ATTAAAA‑ATT‑a‑aaaaaaaaaaaaaaaaaaaaaaaa                                                                                                   >  2:6317797/1‑124 (MQ=255)

                      aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTA‑TTTGTTT‑ATCT‑TCACAAAT‑AAAAAAAAAACAATCCCC‑‑TAAAAA‑ATT‑a‑aaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                  >  1:6120405/1‑123 (MQ=255)

                        aTACCATAAACTTGATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTA‑TTTGTTT‑ATCT‑TCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAA‑ATT‑A‑AAAAAAAAAAAAAAAAAACACaaaaaa                                                                                                >  2:681201/1‑128 (MQ=255)

                         ttacATAAACTTAAAAATTATTATTATTTTGAAACTATTTTTCTA‑ATTTTTTA‑TTTTTTT‑ATAT‑TAAAAAAA‑AAAAAAAAAAAAATACCC‑‑TTAAAA‑ATT‑A‑AAAAAAAAAAAAAAAAAAAACTAAaaac                                                                                               <  1:2378977/125‑1 (MQ=255)

                          aacATAAAAATAATTATTCTTAAAATTGATTTACTCGTTTAATA‑TTTTTTTA‑TTTTTTT‑AACT‑TAACAAAA‑AAAAAAAAAAAAATACCC‑‑TTAAAA‑ATT‑A‑AAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                              <  1:5115678/126‑1 (MQ=255)

                          aaaaTAAAATTAATAATTTTTAAAATTTTTTTAATCGTTTTATT‑TTTTTTTT‑TTTTTTT‑TTTT‑TAAAAAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAAA‑ATT‑A‑AAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                              <  2:203375/125‑1 (MQ=255)

                           acaaaaaataaataatTTTTAAAATTTATATCCTCTTTTACTA‑TTTTTTTA‑TTTTTTT‑ATCT‑TAAAAAAA‑AAAAAAAAAAAAAACCCC‑TTAAAAA‑TTA‑A‑AAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                              <  1:6054481/118‑1 (MQ=255)

                             aTAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTA‑TTTGTTT‑ATCT‑TCACAAAT‑AAAAAAAAAACAATCCC‑‑ATTAAAA‑ATT‑A‑AAAAAAAAAAAAAAAAAAAATaaaaaaaaaaa                                                                                           >  2:1879856/1‑127 (MQ=255)

                             aTAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTA‑TTTGTTT‑ATCT‑TCACAAAT‑AAAAAAAAAACAATCCAC‑TTAAAAA‑TTA‑A‑AAAAAAAAAAAAAAAAAAAAATAaaaaaaaa                                                                                            >  1:1362468/1‑128 (MQ=255)

                              taaaaatattaatTTTTTAAATTTAGATCCTAGTGATATA‑TTTTTTTT‑TTTGTTT‑TTTT‑TAAAAAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑AAA‑AAT‑‑‑‑TAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                       <  2:4732467/119‑1 (MQ=255)

                              tAAACTTAATAATTCTTAATATGTAGAACGTTGTGATATA‑TTTTTTTA‑TTTTTTT‑AACT‑TAAAAAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAAA‑ATT‑A‑AAAAAATAAAAAAAAAAAAACTAAAAACAAAct                                                                                          <  2:6746771/128‑1 (MQ=255)

                               ataaataataaTTATTAAAATTTATCTACTCGTTATATA‑TTTTTTTA‑TTTTTTT‑TTAT‑TAAAAAAT‑AAAAAAAAAAAAATCCCCTT‑‑‑AAA‑AAT‑T‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAActct                                                                                        <  2:5215104/123‑1 (MQ=255)

                                 aatttataatTATTATAATTTATATTCTATTTTTTTA‑TTTTTTTA‑TTTTTTT‑AAAT‑TAAAAAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAAA‑ATT‑A‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                       <  1:5625146/123‑1 (MQ=255)

                                 aCTTAAAAATTATTTAAATTTATTTCCTCCTTTTTTT‑TTTTTTTT‑TTTTTTT‑ATTT‑CCAAAAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAAA‑ATT‑A‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                       <  2:1304815/128‑1 (MQ=255)

                                    taataaTTCTTATAATGTAGATCAACGTGATCTA‑ATTATATA‑TAAAAAA‑ATAT‑TCACAAATAAAAAAAAAAACAATCACCTTAAAAAT‑TAA‑A‑AAAAAAAAAAAAAAAAaaaacaaaaaacaacaataa                                                                                       >  2:6202592/1‑122 (MQ=255)

                                        aatTATTATAATTTTTATAATCTTTATCTA‑TTTTTTTA‑TTTTTTT‑AAAT‑TAAAAAAA‑AAAAAAAAAAAAATCCCCAT‑‑‑AAA‑AAT‑A‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTaa                                                                               <  1:1963908/128‑1 (MQ=255)

                                         attattATAATTTATATACTATTTATTTA‑TTTTTTTA‑TTTTTTT‑ATTT‑TAAAAAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAAA‑ATT‑A‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTaa                                                                               <  1:5318764/128‑1 (MQ=255)

                                            attATAATTTATATCCTATTTATATA‑TTTTTTTA‑TTTTTTT‑AAAT‑TTAAAAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAAA‑ATT‑A‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAAt                                                                            <  1:5675835/127‑1 (MQ=255)

                                                  aTGTAGAACCTCTTTATATA‑TTTTTTTA‑TTTTTTT‑ATCT‑TAAAAAAT‑AAAAAAAAAAAAAACCCCTT‑‑‑AAA‑AAT‑‑‑‑‑TAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtattat                                                                  <  1:1499750/128‑1 (MQ=255)

                                                    tttaaaacTCGTGTTCTA‑TTTTTTTA‑TTTTTTG‑ATATAACAAAAAA‑AAAAAAAAAACAA‑CCCC‑‑‑TAAAA‑AAT‑ATAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtatt                                                                    <  2:5334014/121‑1 (MQ=255)

                                                    gtatataaacGTGATCTT‑TTTTTTTA‑TTTGTTT‑TTAT‑TTACAAAT‑AAAAAAAAAAAAATACCC‑‑ATAAAA‑AAT‑T‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtatt                                                                    <  1:5294958/119‑1 (MQ=255)

                                                     tttatagtctttaTCTA‑TTTTTTTA‑TTTTTTT‑ATAT‑TAAAAAAA‑AAAAAAAAAAAAAATACCCTTAAAAA‑ATA‑A‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtat                                                                     <  1:1620542/116‑1 (MQ=255)

                                                     tagataaacttGATCTA‑TTTTTTTA‑TTTGTTA‑AACT‑ACAAAAAA‑AAAAAAAAAAACAAACCCTT‑‑‑AAA‑AAT‑T‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtattat                                                                  <  1:6364113/118‑1 (MQ=255)

                                                        tttatttttttata‑ttttttta‑ttttttT‑ATAT‑TAAAAAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAAA‑ATT‑A‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAc                                                                <  2:5767536/116‑1 (MQ=255)

                                                        atactcttgttata‑ttttttta‑ttttttT‑AATT‑AAAAAAAT‑AAAAAAAAAAAAATCCCCTT‑‑‑AAA‑AAT‑‑‑‑TAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                                             <  1:500870/116‑1 (MQ=255)

                                                         aatattttatatA‑TTTTTTTA‑TTTTTAT‑AATT‑AAAAAAAA‑TAAAAAAAAAAAATACCATTT‑‑AAA‑ATT‑A‑AAAAAAAAAAAAAAAAAAAACTAAAAACAATCTCTATTTCTTAAAATTCCCTATTATAcc                                                               <  1:1728174/117‑1 (MQ=255)

                                                          actatttttata‑ttttttta‑ttttttT‑ATTT‑TAAAAAAT‑AAAAAAAAAAAAAAACCC‑‑TTAAAA‑ATT‑A‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                              <  1:3249868/118‑1 (MQ=255)

                                                          acTCGTGTTTTATTTTTTTTA‑TTTTTTA‑ATAT‑AAAAAAAA‑AAAAAAAAAAAAAACCCC‑‑‑TAAAA‑AAT‑A‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                              <  1:5858835/127‑1 (MQ=255)

                                                            ttttttttttttttttttt‑ttttttt‑tAAT‑TAAAAATT‑ATAAAAAAAATAATTTCATTTT‑‑AA‑ATT‑T‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                                             <  2:4083587/117‑1 (MQ=255)

                                                              ttttattattttttttA‑TTT‑ATT‑ATTT‑ATAAAAAT‑AAAAAAAAAAAAAAACCATT‑‑‑AAA‑AAT‑A‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                         <  1:2097088/119‑1 (MQ=255)

                                                               ttatatA‑TTTTTTTA‑TTTTATT‑ATAT‑TAAAAAAA‑AAAAAAAAAACAATCCCC‑‑TTAAAA‑ATT‑A‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                         <  1:4170162/123‑1 (MQ=255)

                                                                gtttaa‑tttttttatttttttT‑ATAT‑TAAAAAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAAA‑ATT‑A‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                         <  2:5457250/123‑1 (MQ=255)

                                                                 ttCTA‑TTTTTTTA‑TTTTTTT‑ATAT‑TAAAAAAT‑AAAAAAAAAAAAATACCC‑TTAAAAA‑TAA‑A‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                                        <  1:6182650/127‑1 (MQ=255)

                                                                  taaa‑ttttttta‑ttttttt‑AAAA‑TAAAAAAA‑AAAAAAAAAAAAAAACCC‑ATTAAAA‑ATA‑A‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                                       <  1:1867271/125‑1 (MQ=255)

                                                                   ttaaatttttta‑ttttttt‑atAA‑TAAAAAAA‑AAAAAAAAAAAAAAACCCATAAAAAATAAA‑A‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                         <  1:6836668/123‑1 (MQ=255)

                                                                    aa‑TTTTTTTT‑TTTTTTA‑ATAA‑TAAAAAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAAA‑ATT‑A‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttattt                                                    <  1:3615035/127‑1 (MQ=255)

                                                                     a‑ttttttta‑ttttttt‑ATAT‑TAAAAAAT‑AAAAAAAAAAAAAAACCC‑TTAAAAA‑TTA‑A‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttattt                                                    <  1:4533456/128‑1 (MQ=255)

                                                                     a‑ttttttta‑ttttttt‑ATAT‑TAAAAAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAAA‑AAT‑A‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                                   <  1:652108/128‑1 (MQ=255)

                                                                     a‑TTTTTTTT‑TTTTTTA‑ATAT‑TAAAAAAA‑AAAAAAAAAAAAAAACC‑‑‑ATAAAA‑ATA‑A‑AAAAAAAAAAAAAAAAATAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                                  <  1:726020/128‑1 (MQ=255)

                                                                       tttttttA‑ATTTTTT‑AAAT‑AAAAAAAA‑AAAAAAAAAACAATCCCC‑‑TTAAAA‑AAT‑A‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                                  <  1:3397723/128‑1 (MQ=255)

                                                                        ttttttA‑TTTTTTT‑AAAA‑TAACAAAT‑AAAAAAAAAAAAATACAC‑TTAAAAA‑TTA‑A‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                                  <  1:1053686/128‑1 (MQ=255)

                                                                         tttttA‑TTTTTTT‑ATAT‑TAAAAAAA‑AAAAAAAAAAAAATACC‑‑ATTAAAA‑ATT‑A‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                                <  1:6577902/128‑1 (MQ=255)

                                                                         ttttaA‑TTTTTTT‑ATAT‑AAAAAAAA‑AAAAAAAAAACAAACCC‑‑AAAAAAA‑AAT‑A‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                                <  1:3197503/128‑1 (MQ=255)

                                                                           ttta‑ttttttt‑attt‑tAAAAAAT‑AAAAAAAAAAAAAAAACC‑ATTAAAA‑TTA‑A‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                                               <  2:6238517/128‑1 (MQ=255)

                                                                           tttA‑TTTTTTT‑ATAA‑TAAAAAAA‑AAAAAAAAAAAAAACCC‑‑ATTAAAA‑AAT‑A‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaaa                                              <  1:3817427/128‑1 (MQ=255)

                                                                              ttttttttT‑ATAT‑TAAAAAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑AAA‑AAT‑T‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                                           <  2:246375/126‑1 (MQ=255)

                                                                              a‑TTTTTTT‑TTTT‑TTAAAAAA‑AAAAAAAAAAAAATAACC‑TATAAAA‑ATA‑A‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                                            <  1:6004979/128‑1 (MQ=255)

                                                                                       tttttttaaaaaaT‑AAAAAAAAAAAAATTACATTT‑‑AAA‑ATT‑A‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                                     <  1:5378434/118‑1 (MQ=255)

                                                                                          tctaaacaAAT‑AAAAAAAAAACAATACCC‑‑ATAAAA‑ATT‑A‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGAc                                  <  1:2929285/123‑1 (MQ=255)

                                                                                          tattaacaAAA‑AAAAAAAAAAAAATACACTTT‑‑‑AA‑AAT‑T‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                                 <  1:5726635/123‑1 (MQ=255)

                                                                                            taaacaAAT‑‑AAAAAAAAATAAAAAACATTAAAAA‑TTT‑A‑AAAAAAAAAAAAAAAAAAAACTAAAAAGAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                                 <  1:4415019/125‑1 (MQ=255)

                                                                                            attaaaaaT‑AAAAAAAAAAAAAT‑‑TCTATTTAAA‑ATT‑A‑AAAAAAAAAAAAAAAAAAAACTAACAACAAACTCTATTTCTTAAAATTCCCTATTATAACACATTTTATTTTTAAAATAAGATATTGACat                                <  2:6142834/123‑1 (MQ=255)

                                                                                              taaaaaa‑aaaaaaaaaaaaaaACCCTTAAAAAA‑TAA‑A‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACat                                <  2:6020508/125‑1 (MQ=255)

                                                                                              aaaaaaT‑AAAAAAAAAACAATTCC‑‑ATTAAAA‑ATT‑A‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataa                              <  1:95601/125‑1 (MQ=255)

                                                                                               tcaAAT‑AAAAAAAAAAAAAAACAC‑‑TTAAAA‑ATT‑A‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataat                             <  1:2193543/127‑1 (MQ=255)

                                                                                                aaaaa‑aaaaaaaaaaaaaaACCC‑‑TTAAAA‑ATT‑A‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataata                            <  1:3939211/127‑1 (MQ=255)

                                                                                                  aaT‑AAAAAAAAAAAAAATCCCATTAAAAT‑AAA‑A‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataata                            <  1:3087250/128‑1 (MQ=38)

                                                                                                  aaT‑AAAAAAAAAAAAAACAC‑‑TTAAAAA‑ATA‑A‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatata                          <  1:3043640/128‑1 (MQ=255)

                                                                                                   aaaaaaaaaaaaaaaATACC‑‑ATTAAAA‑AAT‑A‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatata                          <  1:814379/125‑1 (MQ=255)

                                                                                                    t‑AAAAAAAAAACAATCCCC‑‑TTAAAA‑ATT‑A‑AAAAAAAAAAAAAAAAAAAAATAAAAAAAAACACTATTTATTAAAATTACCAATTATAACACATTTTATTTTTAAAATAATATATTTAAatataattaa                        >  1:5813790/1‑121 (MQ=255)

                                                                                                    t‑AAAAAAAAAACAATCCCC‑‑TTAAAA‑ATT‑A‑AAAAAAAAAAAAAAAAAAAA‑TAAAAACAAACAATATTTATTAAAATTCCCTATTTAACCACAATTTATTTTTAAAAAAATATATTGaaaaaaataaaat                       >  2:787384/1‑116 (MQ=255)

                                                                                                     aaaaaaaaaaaaaATCCCC‑‑TTAAAA‑AAT‑T‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatata                        <  1:1264875/127‑1 (MQ=255)

                                                                                                              aaCAATCCCC‑‑TTAAAA‑ATT‑A‑AAAAAAAAAAAAAAAAAAAA‑TAAAAAAAAAAACTATTTATTAAATTAACGTTTTATACCAAATTTTTTTTTTAAAAAAATATATTGAAATAATATATATATAatatat              >  1:5474624/1‑128 (MQ=255)

                                                                                                               aaaaaatacccttaaaa‑att‑a‑aaaaAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatat                <  1:5897210/117‑1 (MQ=255)

                                                                                                                 aaaaacaccataaaa‑aat‑a‑aaaaaAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatat              <  2:6604392/118‑1 (MQ=255)

                                                                                                                 aaaaaaactaaaaaa‑aataa‑aaaaAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatata               <  2:5091817/117‑1 (MQ=255)

                                                                                                                   aaataaataaaaa‑att‑a‑aaaaaAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatatat            <  1:2733859/119‑1 (MQ=255)

                                                                                                                    tccccTTTAAAA‑TAT‑A‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAAtatatata           <  1:2813057/127‑1 (MQ=255)

                                                                                                                    ataacattAAAA‑AATAA‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatatat            <  2:1762621/122‑1 (MQ=255)

                                                                                                                      acacttaaaa‑attaa‑aaaAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATataa          <  1:478498/124‑1 (MQ=255)

                                                                                                                        aaattaaa‑att‑a‑aaaaaAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTAACTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATAc       <  1:2277615/123‑1 (MQ=255)

                                                                                                                         aataaaa‑aataa‑aaaaAAAAAAAAAAAAAAAACTATAAACAAACTCTATTTCTTAAAATTCCCTATTAAACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATAc       <  1:6237423/126‑1 (MQ=255)

                                                                                                                          ttAAAA‑AAA‑T‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCACTATTATACCAAATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACta     <  2:4404626/128‑1 (MQ=255)

ATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTA‑TTTGTTT‑ATCT‑TCACAAAT‑AAAAAAAAAACAATCCCCTTTTAAAA‑AAT‑A‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATAT  >  CP016816/202370‑202617

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.