BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP016816	= 203895	316 (0.120)	483 (0.160) +TTT	124/212	29.9	57.9%	intergenic (+279/+179)	JCVSYN2_00845/JCVSYN2_00850	lipoprotein/inorganic diphosphatase
*	?	CP016816	203896 =	358 (0.110)	483 (0.160) +TTT	124/212	29.9	57.9%	intergenic (+280/+178)	JCVSYN2_00845/JCVSYN2_00850	lipoprotein/inorganic diphosphatase
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 886 total aligned reads displayed.

TTAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATT‑TGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTG‑‑‑‑TT‑‑‑TTTTTTTTTTTTTT‑GT‑‑‑AAAAAT‑AAAAGTAAGATTTGGAT‑CAACCAAAACTATATCAAAAAAA‑T‑TAAAAAAAATAGTTTA‑GTTGAGTTTCAAAT‑CTGCATATATAGTACAAAGGAATTTATGATAGA  >  CP016816/203769‑204023

 aaaTTTTTATAAAAAAAAAAAATAAAAATTTTTAATTTAAATCCATT‑TGTAAAAAAGCCTATGTTCTAGGCTTTTTATTAAACTTATCAACAATACAACGCTTTCAAAGGGTATTTTTTAGG‑‑C‑‑‑TTG‑‑‑‑tt                                                                                                                                             <  2:1432663/127‑1 (MQ=255)

   aTTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATT‑TGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATCCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TGG‑‑‑‑tt‑‑‑tt                                                                                                                                        >  1:5100723/1‑128 (MQ=255)

    ttttttttATAAAAAAAAATAAATA‑TTTTAATTTAAAAGCATTATTTAAAAATCCTTTTGTTTTTGGTTTTTTATTATAATTATAAAAATTAAAACGCTTTAAAAGTTTTTTTTTTTGG‑‑‑‑‑‑GTG‑‑‑‑tt‑‑‑tttt                                                                                                                                      <  2:3614607/128‑1 (MQ=255)

      ttttttATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATT‑TGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTG‑‑‑‑tt‑‑‑ttttt                                                                                                                                     >  2:5841901/1‑128 (MQ=255)

      ttttttAAAAAAAAAAAAAAAAATTTTTTATTTACATCCATT‑TGTAAAAAAGTCTTTTTTTTATGCTTTTTATTATAATTTTAAAAATTACAACGCTTTAAAAGTGTATTTTTTAGG‑‑C‑‑‑ttt‑‑‑‑tt‑‑‑ttttt                                                                                                                                     <  2:5918813/128‑1 (MQ=255)

       ttttttTAAAAAAAAATAAAAATTTTTATTTTAAACCCATT‑TTTAAAAAATCTTATTTTTTTGGGTTTTTTTTTTACTTATAAAAAATAAAACGCTTTAAAATTTTTTTTTTTTTG‑‑t‑‑‑ttt‑‑‑‑tt‑‑‑tttttt                                                                                                                                    <  2:1901517/128‑1 (MQ=255)

        ttttATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATT‑TGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTAGTTTTTAGT‑‑C‑‑‑TTG‑‑‑‑tt‑‑‑ttttttt                                                                                                                                   >  1:6596711/1‑128 (MQ=255)

             taAAAAAAAATAAAAATTTTTCATTTAAAGCCATT‑TGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTG‑‑‑‑tt‑‑‑tttttttttttt                                                                                                                              >  1:1679543/1‑128 (MQ=255)

             taAAAAAAAATAAAAATTTTTCATTTAAAGCCATT‑TGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑A‑‑‑TTG‑‑‑‑tt‑‑‑tttttttttttt                                                                                                                              >  2:512199/1‑128 (MQ=255)

              tataaaaaaTAAAAATTTTTCATTTAAAGCCATT‑TGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTG‑‑‑‑tt‑‑‑ttttttttttttt                                                                                                                             >  1:6198303/4‑128 (MQ=255)

              aaaaaaaaaTAAAAATTTTTCATTTAAAGCCATT‑TGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTG‑‑‑‑tt‑‑‑ttttttttttttt                                                                                                                             >  2:2152153/1‑128 (MQ=255)

               aaaaaaaaTAAAAATTTTTCATTTAAAGCCATT‑TGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAATGTGTATTTTTTAGG‑‑G‑‑‑TTG‑‑‑‑tt‑‑‑tttttttttttttt                                                                                                                            >  2:3378395/1‑128 (MQ=255)

                 aaaaaaT‑AAAATTTTTAATTTAAATTCATT‑TGTTAAAAATCCTATTTTTTTGGGTTTTTTTTTAAATTATAAAAATTTAAACCCTTTAAAATTGTTTTTTTTTGG‑‑G‑‑‑Ttt‑‑‑‑tt‑‑‑ttttttttttttttttt                                                                                                                         <  2:6469696/128‑4 (MQ=255)

                  aaaaataaaaatTTTTCATTTAAAGCCATT‑TGTAAAAAAGCCTATGTGCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTAAAAGTGTATTTTTTAGG‑‑C‑‑‑TTG‑‑‑‑tt‑‑‑ttttttttttttttttt                                                                                                                         >  2:6390599/1‑125 (MQ=255)

                   aaaataaaaatTTTTCATTTAAAGCCATT‑TGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAAAGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTG‑‑‑‑tt‑‑‑tttttttttttttttttt                                                                                                                        >  2:3565574/1‑124 (MQ=255)

                    aaataaaaatTTTTCATTTAAAGCCATT‑TGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTG‑‑‑‑tt‑‑‑ttttttttttttttttttt                                                                                                                       >  1:3205070/1‑123 (MQ=255)

                        aaaaatTTTTCATTTAAATCCATT‑TTTAAAAAATCATATGTTCTAGGCTTTTTATTTTACTTATAAACATTACAACTCTTTAAAATTGTATTTTTTAGG‑‑C‑‑‑TTG‑‑‑‑tt‑‑‑ttttttttttttttttgtaaaaa                                                                                                                   <  1:1953177/128‑10 (MQ=255)

                          aaatTTTTAATTTTATTCTATT‑TTTAAAAAATCCTTTGTTATTGTTTTTTTATTATAATTTAAAAAATAACACCCCTTTAAAATTGTATTTTTTAGG‑‑G‑‑‑Ttt‑‑‑‑tt‑‑‑tttttttttttttttttgtaaaaat                                                                                                                 <  2:3093453/128‑12 (MQ=255)

                              ttttCATTTAAAGCCATT‑TTTAAAAAAGCCTATGTTCTATGCTTTTTATTATACTTATCAAAATTACAAAGATTTCAAATTGTATTTATTAGG‑‑C‑‑‑TTG‑‑‑‑TT‑‑‑TTTTTTTTTTTTTT‑TTTA‑AAAAAT‑aaaat                                                                                                          >  1:2919337/1‑127 (MQ=255)

                              ttttAATTTAAAGCCATT‑TGTAAAAAATCCTATGTTTTAGGCTTTTTATTATACTTATCAACATTAAAACGCTTTCAAATTGTATTTTTTAGG‑‑C‑‑‑TTGT‑‑‑TT‑‑‑TTTTTTTTTTTTTT‑GT‑‑‑AAAAAT‑AAAAGt                                                                                                         <  1:515313/128‑1 (MQ=255)

                                  aaTTTTAATCCTTT‑TTTAAAAAATCCTATTTTTTATGTTTTTTTTTTTAAATATAAACATTACAACGCTTTCAAATTTTTTTTTTTTTG‑‑C‑‑‑TTGTTT‑TT‑‑‑TTTTTTTTTTTTTT‑GT‑‑‑AAAAAT‑AAAAGTaa                                                                                                       <  2:6832491/127‑1 (MQ=255)

                                      tAAAGCCATT‑TGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGTTT‑TT‑‑‑TTTTTTTTTTTTTT‑TT‑‑‑AAAAAT‑AAAAGTAAGAtt                                                                                                   >  2:5624070/1‑128 (MQ=255)

                                       aatcccAAT‑TTTAAAAATGCATTTTTTATAGGTTTTTTTTTTAAATTAAGAAAATTACAACGCTTTAAAATTGTTTTTTTTATG‑‑G‑‑‑TTGTT‑‑TT‑‑‑TTTTTTTTTTTTTT‑GT‑‑‑AAAAAT‑AAAAGTAAGATTTg                                                                                                 <  2:6748977/124‑1 (MQ=255)

                                        aaGCCATT‑TGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTG‑‑‑‑TT‑‑‑TTTTTTTTTTTTTTATT‑‑‑AAAAAT‑AAAATAAAAAttttaa                                                                                               >  1:374411/1‑125 (MQ=255)

                                        aaGCCATT‑TGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTG‑‑‑‑TT‑‑‑TTTTTTTTTTTTTT‑TT‑‑‑TAAAAA‑AAAAATataaattttga                                                                                              >  2:5414212/1‑118 (MQ=255)

                                           ccATT‑TGTAAAAAATCCAATGTTCTAGGCTTTTTATTTTACTTATAAACATTACAAAGCTTTCAAATTGTATTTTTTAGG‑‑C‑‑‑TTGT‑‑‑TT‑‑‑TTTTTTTTTTTTTT‑GT‑‑‑AAAAAT‑AAAAGTAAGATTTGGAT‑Ca                                                                                           <  1:5638931/128‑1 (MQ=255)

                                           ccAAT‑TTTAAAAAATCCTATGTTCTATGCTTTTTATTATAATTATAAACATTAAAACGCTTTAAAATTTTATTTTTTTGG‑‑C‑‑‑TTGTTT‑TT‑‑‑TTTTTTTTTTTTTT‑GT‑‑‑AAAAAT‑AAAAGTAAGATTTGGAt                                                                                              <  1:5357999/128‑1 (MQ=255)

                                                  gTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGTTT‑TT‑‑‑TTTTTTTTTTTTTT‑GT‑‑‑TAAAAT‑AAAATTAATTTTTGGAG‑AAACCa                                                                                       >  2:4191095/1‑128 (MQ=255)

                                                  gTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGTT‑‑TT‑‑‑TTTTTTTTTTTTTT‑TT‑‑‑TAAAAT‑AAAATTAATTTTTTGAT‑AAAACaa                                                                                      >  2:3968511/1‑128 (MQ=255)

                                                   tAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGTTT‑TT‑‑‑TTTTTTTTTTTTTT‑TT‑‑‑AAAAAT‑AAAATTTATATTTTGAT‑AAAACaa                                                                                      >  1:2240579/1‑128 (MQ=255)

                                                    aaaaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGTTT‑TT‑‑‑TTTTTTTTTTTTTT‑GT‑‑‑AAAAAT‑AAAATTAAAATTTTGAA‑AAACCaaa                                                                                     >  1:2301609/1‑128 (MQ=255)

                                                     aaaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGTT‑‑TT‑‑‑TTTTTTTTTTTTTT‑GT‑‑‑AAAAAT‑AAAAGTAATATTTGGAT‑CAACAAAAAc                                                                                   >  2:5341636/1‑128 (MQ=255)

                                                      aaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGTT‑‑TT‑‑‑TTTTTTTTTTTTTT‑TT‑‑‑AAAAAT‑AAAAGTAAGATTTGGTT‑AAAACaaaaat                                                                                  >  1:833594/1‑126 (MQ=255)

                                                       aaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGTTT‑TT‑‑‑TTTTTTTTTTTTTT‑TT‑‑‑AAAAAT‑AAAATTAAAATTTTGAT‑AAACAaaaaat                                                                                  >  1:4190778/1‑126 (MQ=255)

                                                         atcatATTTTCTAGGATTTTTATTATAATTATAAAAATTAAAACGATTTAAAATTGTATTTTTTATG‑‑C‑‑‑TTG‑‑‑‑TT‑‑‑TTTTTTTTTTTTTT‑GT‑‑‑AAAAAT‑AAAAGTAAGATTTGGAT‑CAACCAAAACTATATc                                                                             <  1:5318079/124‑1 (MQ=255)

                                                          gCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGTT‑‑TT‑‑‑TTTTTTTTTTTTTT‑TT‑‑‑AAAAAT‑AAAAGTAAGATTTGTAT‑CAAAAAAAACtattt                                                                              >  1:133313/1‑126 (MQ=255)

                                                             tATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGTTT‑TT‑‑‑TTTTTTTTTTTTTT‑TT‑‑‑AAAAAT‑AAAAGTAAGATTTGGAT‑GAACCAAAACTatataa                                                                            >  1:1897152/1‑126 (MQ=255)

                                                               tGTTTTATGTTTTTTTTTATTCTTATAAACATAAATACGTTTTTAAAGTTTATTTTTTAGG‑‑G‑‑‑TTGTTT‑TT‑‑‑TTTTTTTTTTTTTT‑GT‑‑‑AAAAAT‑AAAAGTAAGATTTGGAT‑CAACCAAAACTATATCaaa                                                                          <  2:6632119/128‑1 (MQ=255)

                                                                 ttCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGTTT‑TT‑‑‑TTTTTTTTTTTTTT‑TT‑‑‑AAAAAT‑AAAATTAATATTTTTAT‑AAAACAAAAAAATTTaaaaaa                                                                        >  1:6354352/1‑128 (MQ=255)

                                                                 ttCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGTT‑‑TT‑‑‑TTTTTTTTTTTTTT‑TT‑‑‑TAAAAT‑AAAAGTAAGATTTGGAT‑AAACCAAAAATTTATCaaaaaa                                                                       >  2:73850/1‑128 (MQ=255)

                                                                  tCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGTTT‑TT‑‑‑TTTTTTTTTTTTTT‑TT‑‑‑AAAAAA‑AAAATTTATATTTGTAT‑AAAACAAAAATATATAaaaaaa                                                                       >  1:2080810/1‑128 (MQ=255)

                                                                   cTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGTTTTTT‑‑‑TTTTTTTTTTTTTT‑TT‑‑‑AAAAAT‑AAAATTAAATTTTTGAT‑AAACCAAAAATATTACaaaaaa                                                                       >  1:6819087/1‑128 (MQ=255)

                                                                   cTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGTTTTTT‑‑‑TTTTTTTTTTTTTT‑GT‑‑‑AAAAAT‑AAAAGTAAGATTTGGAG‑AAAAAAAAACTATATAaaaaaa                                                                       >  2:652854/1‑128 (MQ=255)

                                                                    tAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGTTT‑TT‑‑‑TTTTTTTTTTTTTT‑TT‑‑‑AAAAAT‑TAAATTAATATTTGGAT‑CAACCAAAACTATATCAAAAAAA‑t                                                                    >  1:5447794/1‑128 (MQ=255)

                                                                     atttttttttttATAATTATAAAAATTAATAAGCTTTAAAATTGTATTTTTTTGGT‑T‑‑‑TTT‑‑‑‑TT‑‑‑TTTTTTTTTTTTTT‑GT‑‑‑AAAAAT‑AAAAGTAAGATTTGGAT‑CAACCAAAACTATATCAAAAAAA‑T‑Taa                                                                <  1:6124944/124‑1 (MQ=255)

                                                                         ttttttttAAATTTATAAAAAATTCAAAGTTTTATATGTGTTTTTTTTAGG‑‑CTTTTTT‑‑‑‑TT‑‑‑TTTTTTTTTTTTTT‑GT‑‑‑AAAAAT‑AAAAGTAAGATTTGGAT‑CAACCAAAACTATATCAAAAAAA‑T‑Taaaa                                                              <  2:5753485/128‑1 (MQ=255)

                                                                         tttttATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGTTT‑TT‑‑‑TTTTTTTTTTTTTT‑TT‑‑‑AAAAAA‑AAATATAATATTTGTTT‑AAACCAAAAATAAAAAAAAAAAA‑A‑Taaaa                                                              >  2:1573004/1‑128 (MQ=255)

                                                                         tttttATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGTTT‑TT‑‑‑TTTTTTTTTTTTTT‑GT‑‑‑AAAAAA‑AAAATTAATTTTTTGAA‑AAAACAAAACTATATAAAAAAAA‑T‑Aaaaa                                                              >  1:3434476/1‑128 (MQ=255)

                                                                         tttttATTATACTTATCAACATTACAACGCTATCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTG‑‑‑‑TTTTATTTTTTTTTTTTTT‑AT‑‑‑AAAAATAAAAAATAATATTTGTTA‑AAACAAAAAATTAATGAAAAAAA‑A‑Taaa                                                               >  1:5919678/1‑128 (MQ=255)

                                                                           tttATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGTTT‑TT‑‑‑TTTTTTTTTTTTTT‑TT‑‑‑AAAAAT‑AAAATTAATATTTTTAT‑CAAACAAAAATAATAAAAAAAAA‑T‑Taaaaaa                                                            >  1:952983/1‑128 (MQ=255)

                                                                           tttATTATACTTATCAACATTACAACGCTATCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGTTT‑TT‑‑‑TTTTTTTTTTTTTT‑TT‑‑‑AAAAAT‑AAAAATTATATTTGGAT‑AAACCAAAAAAAAAAAAAAAAAA‑T‑Ttaaaaa                                                            >  1:3611598/1‑128 (MQ=255)

                                                                            ttattaTACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGTTTTTT‑‑‑TTTTTTTTTTTTTT‑TT‑‑‑AAAAAT‑AAAAATAAGTTTTGGAT‑ATACCAAAACTATATGAAAAAAA‑T‑Taaataa                                                            >  1:4378213/1‑128 (MQ=255)

                                                                               ttatACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGTTT‑TT‑‑‑TTTTTTTTTTTTTT‑TT‑‑‑AAAAAT‑AAATGTTATATTTGGTT‑CAACAAAAACTATAAtaaaaaaa‑t‑ataaaaaaata                                                        >  2:6149046/1‑128 (MQ=255)

                                                                               ttatACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGTTT‑TT‑‑‑TTTTTTTTTTTTTT‑TT‑‑‑AAAAAT‑AAAATTAATATTTTGAT‑AAACCAAAAATAAAT‑Aaaaaaa‑a‑taaaaaaaataa                                                       >  2:4809433/1‑127 (MQ=255)

                                                                                tataCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGTT‑‑TT‑‑‑TTTTTTTTTTTTTT‑GT‑‑‑AAAAAT‑AAAAGTAAGATTTGGAT‑ACACAAAACCTATTTCAAAAATA‑T‑Taaaaaaataatt                                                      >  1:1572125/1‑123 (MQ=255)

                                                                                      tttCAACATTACAACGTTTTAAAATTTTTTTTTTTTGG‑‑G‑‑‑TTGTTT‑TT‑‑‑TTTTTTTTTTTTTT‑GT‑‑‑AAAAAT‑AAAAGTAAGATTTGGAT‑CAACCAAAACTATATCAAAAAAA‑T‑TAAAAAAAAtagttta‑gt                                                <  1:6691290/126‑1 (MQ=255)

                                                                                      tataAACATTAAAACTTTTTAAAATTTTATTTTTTATGTTT‑‑‑TTT‑‑‑‑TT‑‑‑TTTTTTTTTTTTTT‑GT‑‑‑AAAAAT‑AAAAGTAAGATTTGGAT‑CAACCAAAACTATATCAAAAAAA‑T‑TAAAAAAAAtagttta‑gtt                                               <  1:5526596/128‑1 (MQ=255)

                                                                                       aTCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGTTT‑TT‑‑‑TTTTTTTTTTTTTT‑TT‑‑‑AAAAAA‑AAAATTAATATTTTGAT‑AAAACAAAAATattaaaaaaaaa‑t‑taaaaaaaaattatttttt                                                >  1:1448942/1‑118 (MQ=255)

                                                                                        tCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGTTTTTT‑‑‑TTTTTTTTTTTTTT‑TT‑‑‑AAAAAA‑AAAATTAATATTTTGAA‑CAACCAAAAATATAAAAAAAAAA‑T‑TAAAAAAAAaatttta‑ttt                                               >  1:6063841/1‑128 (MQ=255)

                                                                                             aTTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGTTT‑TT‑‑‑TTTTTTTTTTTTTT‑TT‑‑‑AAAAAA‑AAAATTAAAATTTTTAT‑CAAACAAAAATAATTAAAAATAA‑T‑TAAAAAAAATATTTTA‑GTTTAtttt                                         >  1:5007412/1‑128 (MQ=255)

                                                                                             aTTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGT‑‑‑TT‑‑‑TTTTTTTTTTTTTT‑GT‑‑‑AAAAAT‑AAAATTAAGTTTTGGAT‑CAACCAAAACTATATCAAAAAAA‑T‑TAAAAAAAATAGTTTT‑GTGTAGtttaa                                       >  2:5183933/1‑126 (MQ=255)

                                                                                                aCAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGTTT‑TT‑‑‑TTTTTTTTTTTTTT‑TT‑‑‑AAAAAT‑AAAATTAATATTTTGAT‑AAAACAAAAATATATAAAAAAAA‑T‑TAAAAAAAATATTTTA‑TTTTATTTTaaa                                      >  1:2534475/1‑128 (MQ=255)

                                                                                                 cAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTG‑‑‑‑TT‑‑‑TTTTTTTTTTTTTT‑TTTTAAAAAAA‑AAAATTAATATTTTGAA‑AAAACAAAAAAATAAGAAAAAAA‑T‑AAAAAAAAAttgttta‑ttttgtttgaaaa                                     >  2:2837468/1‑118 (MQ=255)

                                                                                                  aaCGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGTTT‑TT‑‑‑TTTTTTTTTTTTTT‑TT‑‑‑AAAAAT‑AAAAGTTAGATTTTGTT‑AAACCAAAAATATATAAAATAAA‑T‑TAAAAAAAATAGTTTATGTTG‑GTTTCaaag                                    >  2:3756255/1‑127 (MQ=255)

                                                                                                   aCGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGTTT‑TT‑‑‑TTTTTTTTTTTTTT‑TT‑‑‑AAAAAT‑AAAATTAATTTTTGGAT‑AAACCAAAA‑AATATTAAAAAAATT‑TAAAAAAAATATTTTT‑TTTGAGTTTAAAAT‑c                                  >  1:711223/1‑128 (MQ=255)

                                                                                                     gCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGTTT‑TT‑‑‑TTTTTTTTTTTTTT‑TT‑‑‑AAAAAT‑AAAAATAAAATTTGGAA‑AAACAAAAAAAAAATAAAAAAAA‑T‑TAAAAAAAAATTTTTT‑TTTGAGttaaaaaaatg                                 >  2:1118856/1‑119 (MQ=255)

                                                                                                     gCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGTTT‑TT‑‑‑TTTTTTTTTTTTTT‑GT‑‑‑AAAAAT‑AAAAATAATATTTTGAT‑CACCCAAAAAAATATCAAAAAAA‑T‑TAAAAAAAAATTTTTA‑GTTTAGTTTCAAAT‑ATg                                >  1:5258080/1‑128 (MQ=255)

                                                                                                      gattttttgtgtTTTTTTTATG‑‑T‑‑‑TTG‑‑‑‑TT‑‑‑TTTTTTTTTTTTTT‑TTTG‑TAAAAT‑AAAAGTAAGATTTGGAT‑GAACCAAAACTATATCAAAAAAA‑T‑TAAATAAAATAGTTTA‑GTTGAGTTTCAAAT‑CTGCa                              <  2:6259007/120‑1 (MQ=255)

                                                                                                      cTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGTT‑‑TT‑‑‑TTTTTTTTTTTTTT‑TT‑‑‑AAAAAT‑AAAATTAATATTTGGAT‑AAAAAAAAAATATATAAAAAAAA‑T‑TAAAAAAAATATTTTA‑TTTTATTTTaaaaaattaa                               >  1:2420584/1‑122 (MQ=255)

                                                                                                       tttCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGTTT‑TT‑‑‑TTTTTTTTTTTTTT‑TT‑‑‑AAAAAT‑AAAAGTAATATTTGGTT‑AAACCAAAACTATAAAAAAAAAA‑T‑TAAAAAAAATATTTTA‑TTTTAGTTTAAAAA‑CAGCa                              >  1:3923118/1‑128 (MQ=255)

                                                                                                       tttCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGTT‑‑TT‑‑‑TTTTTTTTTTTTTT‑TT‑‑‑AAAAAT‑AAAATTAATTTTTTGAT‑AAACAAAAAATTTTAGAAAAAAA‑T‑TAAAAAAAATATTTTA‑GTTTAGTTTaaaaaattaat                              >  1:3556313/1‑121 (MQ=255)

                                                                                                        ttCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTG‑‑‑‑TT‑‑‑TTTTTTTTTTTTTT‑TT‑‑‑AAAAAT‑AAAAGTAAGATTTGGAT‑AAACCAAAAATATATAAAAAAAA‑T‑TAAAAAAAATATTTTA‑TTTGATTTTCaaaaatgagatag                           >  1:5843841/1‑118 (MQ=255)

                                                                                                         tCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGTTT‑TT‑‑‑TTTTTTTTTTTTTT‑TT‑‑‑TAAAAT‑AAAATTAATATTTTGAT‑AAAACAAAAATATAAAAAAAAAA‑T‑TAAAAAAAAAATTTTA‑TTATAGTTTaaaaaattaata                             >  1:1132531/1‑120 (MQ=255)

                                                                                                            aaGTGTATTTTTTAGG‑‑C‑‑‑TTGTTT‑TT‑‑‑TTTTTTTTTTTTTT‑GT‑‑‑AAAAAA‑AAAATTAAGATTTGGAT‑AAACAAAAAATTTATCAAAAAAA‑T‑TAAAAAAAATATTTTA‑TTTTAGTTTAAAAT‑CTGCaaatat                         >  1:4708832/1‑128 (MQ=255)

                                                                                                             aGTGTATTTTTTAGG‑‑C‑‑‑TTGTTT‑TT‑‑‑TTTTTTTTTTTTTT‑TT‑‑‑AAAAAT‑AAAATTTATATTTGGTTACACCCAAAAATAT‑TAAAAAAAA‑T‑TAAAAAAAAAATTTTA‑TTTGATGTTAAaat‑ataaatataat                        >  2:6016916/1‑126 (MQ=255)

                                                                                                               tgtATTTTTTAGG‑‑C‑‑‑TTGTTT‑TT‑‑‑TTTTTTTTTTTTTT‑TT‑‑‑AAAAAT‑AAAATAAAATTTTGGAT‑AAACCAAAACTTATTAAAAAAAA‑T‑TAAAAAAAAATTATTA‑TTTGATTTACAAAT‑ATGCttataaatg                      >  1:4602233/1‑124 (MQ=255)

                                                                                                                gtATTTTTTAGG‑‑C‑‑‑TTGTTT‑TT‑‑‑TTTTTTTTTTTTTT‑TT‑‑‑AAAAAA‑AAAATTTAGATTTTGTT‑TAAAAAAAAATAATTAAAAAAAA‑T‑TTAAAAAAATATTTTA‑TTTTATTTTAAATT‑ATTAATTTATAGTa                     >  1:2757503/1‑128 (MQ=255)

                                                                                                                 tATTTTTTAGG‑‑C‑‑‑TTGTTT‑TT‑‑‑TTTTTTTTTTTTTT‑TT‑‑‑AAAAAA‑AAAAGTAAAATTTGGAT‑AAACCAAAACTATATCAAAAAAA‑T‑TAAAAAAAATATTTTA‑GTTTAGTTTAAAAT‑ATGAATATATATTaa                    >  2:2446759/1‑127 (MQ=255)

                                                                                                                   ttttttAGG‑‑C‑‑‑TTGTTT‑TT‑‑‑TTTTTTTTTTTTTT‑GT‑‑‑AAAAAT‑AAAATTAAGATTTGGAT‑CAACCAAAACTATATCAAAAAAA‑T‑TAAAAAAAATATTTTA‑TTTGTGTTTCAAAT‑AAGCATTTATATTaaaa                  >  1:4089498/1‑128 (MQ=255)

                                                                                                                     ttttAGG‑‑C‑‑‑TTGT‑‑‑TT‑‑‑TTTTTTTTTTTTTT‑TT‑‑‑AAAAAT‑AAAATTAAGATTTGGAT‑AAACCAAAAATATATAAAAAAAA‑T‑AAAAAAAAATATTTTT‑TTTTATTTTAAATT‑ATTCATATATAGTAAAAAgta              >  1:780880/1‑126 (MQ=255)

                                                                                                                      tttAGG‑‑C‑‑‑TTGT‑‑‑TT‑‑‑TTTTTTTTTTTTTT‑TT‑‑‑TAAAAA‑AAAATTAATATTTTGGT‑AAACCAAAAATTTTTAAAAAAAA‑A‑TAAAAAAAAAATTTTA‑TTTTTATTTAAAATACTGAAtatatataaaatagta              >  1:3073056/1‑118 (MQ=255)

                                                                                                                             tttttttttttttt‑‑‑tttttttttttttt‑GT‑‑‑AAAAAT‑AAAAGTAAGATTTGGAT‑CAACCAAAACTATATCAAAAAAA‑T‑TAAAAAAAATAGTTTA‑GTTGAGTTTCAAAT‑CTGCATATATAGTACAAAGGa              <  1:486386/116‑1 (MQ=255)

                                                                                                                              ttttttttttttt‑‑‑tttttttttttttt‑tt‑‑‑TATAAT‑TATAGTTAGATTTTTAT‑CAACAAAAAATATATCAAAAATA‑T‑TAAAAAAATTATTTTA‑GTTTAGTTTCAAAT‑CTGCATATATAGTACAAAGGaa             <  2:2566437/117‑1 (MQ=255)

                                                                                                                              taggcttgttttt‑‑‑tttttttttttttt‑tt‑‑‑AAAAAT‑AAATGTAATTTTTGGTT‑AAACCAAAAATTTTTAAAAAAAA‑T‑TAAAAAAAAAATTTTA‑TTTGATTTTAAAAT‑GATAATATATAGTAAAAAGGaa             >  1:2616376/12‑128 (MQ=255)

                                                                                                                                ttttttttttt‑‑‑tttttttttttttt‑GT‑‑‑AAAAAT‑AAAAGTAAGATTTGGAT‑CAACCAAAACTATATCAAAAAAA‑T‑TAAAAAAAATAGTTTA‑GTTGAGTTTCAAAT‑CTGCATATATAGTACAAAGGAAtt           <  1:6280458/119‑1 (MQ=255)

                                                                                                                                ttgtttttttt‑‑‑tttttttttttttt‑GT‑‑‑AAAAAT‑AAAAGTAAGATTTGGAT‑CAACCAAAACTATATCAAAAAAA‑T‑TAAAAAAAATAGTTTA‑GTTGAGTTTCAAAT‑CTGCATATATAGTACAAAGGAAtt           <  2:5576974/119‑1 (MQ=255)

                                                                                                                                 gttttttttt‑‑‑tttttttttttttt‑GT‑‑‑AAAAAT‑AAAAGTAAGATTTGGAT‑CAACCAAAACTATATCAAAAATA‑T‑TAAAAAAAATAGTTTA‑GTTGAGTTTCAAAT‑CTGCATATATAGTACAAAGGAAttt          <  1:5743453/120‑1 (MQ=255)

                                                                                                                                 ggtttttttt‑‑‑tttttttttttttt‑GT‑‑‑AAAAAT‑AAAAGTAAGATTTGGAT‑CAACCAAAACTATATCAAAAAAA‑T‑TAAAAAAAATAGTTTA‑GTTGAGTTTCAAAT‑CTGCATATATAGTACAAAGGAAttt          <  2:5686934/120‑1 (MQ=255)

                                                                                                                                  ttttttttt‑‑‑tttttttttttttt‑GT‑‑‑AAAAAT‑AAATGTAAGATTTGGAT‑CAAGCAAAACTATATCAAAAAAA‑T‑TAAAAAAAATAGTTTA‑GTTGAGTTTCAAAT‑CTGCATATATAGTACAAAGGAATTTa         <  1:4308363/121‑1 (MQ=255)

                                                                                                                                  ttttttttt‑‑‑tttttttttttttt‑GT‑‑‑AAAAAT‑AAAAGTAAGATTTGGAT‑CAACCAAAACTATATCAAAAAAA‑T‑TAAAAAAAATAGTTTA‑GTTGAGTTTCAAAT‑CTGCATATATAGTACAAAGGAATTTa         <  1:6526614/121‑1 (MQ=255)

                                                                                                                                  ttttttttt‑‑‑tttttttttttttt‑GT‑‑‑AAAAAT‑AAAAGTAAGATTTGGAT‑CAACCAAAACTATATCAAAAAAA‑T‑TAAAAAAAATAGTTTA‑GTTGAGTTTCAAAT‑CTGCATATATAGTACAAAGGAATTTa         <  2:5496177/121‑1 (MQ=255)

                                                                                                                                  tttgttttt‑‑‑tttttttttttttt‑GT‑‑‑AAAAAT‑AAAAGTAAGATTTTGAT‑CAACCAAAACTATATCAAAAAAA‑T‑TAAAAAAAATAGTTTA‑GTTGAGTTTCAAAT‑CTGCATATATAGTACAAAGGAATTTa         <  2:4432671/121‑1 (MQ=255)

                                                                                                                                   tttttttt‑‑‑tttttttttttttt‑GT‑‑‑AAAAAT‑AAAAGTAAGATTTGGAT‑TAAACAAAAATATATAAAAAAAA‑T‑TAAAAAAAATAGTTTA‑GTTGAGTTTCAAAT‑CTGCATATATAGTACAAAGGAATTTAt        <  2:2039819/122‑1 (MQ=255)

                                                                                                                                   tttttttt‑‑‑tttttttttttttt‑GT‑‑‑AAAAAT‑AAAAGTAAGATTTGGAT‑CAACCAAAACTATATCAAAAAAA‑T‑TAAAAAAAATAGTTTA‑GTTGAGTTTCAAAT‑CTGCATATATAGTACAAAGGAATTTAt        <  2:1701513/122‑1 (MQ=255)

                                                                                                                                      gtttt‑‑‑tttttttttttttt‑tt‑‑‑AAAAAT‑AAAAATAATATTTGTAT‑AACCCAAAAATTTAAAAAAAAAA‑TATAAAAAAAAT‑TTTTT‑TTTGTTTTAAAAAA‑ATGAATATATATTAAAAAGAAAtttttata     >  2:2294927/4‑123 (MQ=255)

                                                                                                                                        ttt‑‑‑tttttttttttttt‑tt‑‑‑TAAAAT‑AAAATGTATTTTTTGTT‑TAAACAAAACTATTTTAAAAAAA‑T‑TAAAAAAAATAGTTTA‑GTTGAGTTTCAAAT‑CTGCATATATAGTACAAAGGAATTTATGATAg   <  2:5266225/127‑1 (MQ=255)

                                                                                                                                        ttt‑‑‑tttttttttttttt‑tt‑‑‑AAAAAT‑AAAATTAAGTTTTGGAT‑CAAACAAAAATTTATTAAAAAAA‑T‑TTAAAAAAATAGTTTA‑GTTGAGTTTCAAAT‑CTGCATATATAGTACAAAGGAATTTATGATAg   <  2:830826/127‑1 (MQ=255)

                                                                                                                                        ttt‑‑‑tttttttttttttt‑tt‑‑‑AAAAAT‑AAAAGTAAGTTTTGGAT‑CAACCAAAAATATATAAAAAAAA‑T‑TAAAAAAAATATTTTA‑TTTGTGTTTCAAAT‑ATTCATATTTATTAAAAAGGAATTTaatatta   >  1:1012791/2‑122 (MQ=255)

                                                                                                                                        ttt‑‑‑tttttttttttttt‑GT‑‑‑AAAAAT‑AATAGTAAGATTTTGAT‑AAACCAAAACTATATCAAAAAAA‑T‑TAAAAAAAATAGTTTA‑GTTGAGTTTCAAAT‑CTGCATATATAGTACAAAGGAATTTATGATAg   <  1:1748205/127‑1 (MQ=255)

                                                                                                                                         tt‑‑‑tttttttttttttt‑tt‑‑‑AATATT‑TTAAGTAAGTTTTGGAT‑AAATTAAATTTATATAAAAAAAT‑T‑TAAAAAATATAGTTTA‑GTTGAGTTTCAAAT‑CTGCATATATAGTACAAAGGAATTTATGATAGa  <  2:2956880/128‑1 (MQ=255)

TTAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATT‑TGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTG‑‑‑‑TT‑‑‑TTTTTTTTTTTTTT‑GT‑‑‑AAAAAT‑AAAAGTAAGATTTGGAT‑CAACCAAAACTATATCAAAAAAA‑T‑TAAAAAAAATAGTTTA‑GTTGAGTTTCAAAT‑CTGCATATATAGTACAAAGGAATTTATGATAGA  >  CP016816/203769‑204023

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.