Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816202,4770CA45.1% 501.3 / 294.9 679intergenic (+255/‑420)JCVSYN2_00840/JCVSYN2_00845hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand):  ref base C (210/156);  new base A (86/215);  total (297/382)
Fisher's exact test for biased strand distribution p-value = 7.06e-14
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 765 total aligned reads displayed.

AAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTTTTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATAT  >  CP016816/202350‑202605
                                                                                                                                 |                                                                                                                                
aagtaGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAc                                                                                                                                  <  1:2479722/128‑1 (MQ=255)
aagtaGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAc                                                                                                                                  <  1:5818904/128‑1 (MQ=255)
 agtagtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATTTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACa                                                                                                                                 <  1:4579262/128‑1 (MQ=255)
 agtagtGAAGTAATTGTAAATAATAGAGTTAAGGATAATTAAAATAACATAAACTTAATAATTATTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACa                                                                                                                                 <  2:4290291/128‑1 (MQ=255)
   tagtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCATATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAt                                                                                                                               <  1:2699438/128‑1 (MQ=255)
    agtGAAGTTATTTTAAATAATTTAGTTAAGGTTAATTAAAATACCTTAAAATTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATc                                                                                                                              <  1:3698696/128‑1 (MQ=255)
    agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTAATAATGTAGATCCTAGTGATC‑TATTTATATATTTGATTATAATATAAAAA‑AAAAAAAAAACaaac                                                                                                                              >  2:4493407/1‑126 (MQ=255)
    agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTATTATAATGAATATCCAATAGATC‑TATTATTTTATATATATATATTCACAAAT‑AAAAAAAAAACAAta                                                                                                                              >  1:6075651/1‑127 (MQ=255)
     gtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATACTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAAtac                                                                                                                             >  2:6276700/1‑126 (MQ=255)
      tGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATC‑TATTTTTTTATAATTATATATTCACAAAT‑Aaaaaaaaaaaaaaaaa                                                                                                                            >  2:1910723/1‑124 (MQ=255)
      tGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATccc                                                                                                                            <  1:3030510/128‑1 (MQ=255)
      tGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTAAATAAATCTTATAATGTAGATACACAAGATC‑TATTTTATTATTAGTTTATCTTCACAAAA‑AAAAAAAAAACAATcac                                                                                                                            >  2:2255311/1‑126 (MQ=255)
        tatttttgttAAAAAATATATTTTAGTTTAAATAAAATTCAATAAACTTAATAAATCTTATAATTTATCACCTCGGTATC‑TATTTTTTTAATTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCt                                                                                                                          <  2:1356650/119‑1 (MQ=255)
        aaGTTAGTGTAAATAAAAGAGATAAATATAATTAAAATACAATAAACTTAATAATACATATAATGAATATCCACAAAAAC‑TATTATATAATATAAAAAACTACACAAAT‑Aaaaaaaaaaaaaaacaaa                                                                                                                          >  2:4860105/1‑122 (MQ=255)
         aGTTATTGTAAATAATAGAGTTAAGGTTAATTAAAATAACATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCtt                                                                                                                         <  2:2771357/128‑1 (MQ=255)
         aGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACAATAAAATTAATAATTATTATAATGTATATACTAGTGATA‑TATATTTATATTTTTTTATATTaaaaaaa‑aaaaaaaaaaaaaaaaaaat                                                                                                                         >  2:2531594/1‑121 (MQ=255)
          gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTTATC‑TATTTTTTTATTTTTTTATCTTAAAAAAT‑Aaaaaaaaaaaaaaaacataa                                                                                                                        >  1:6571261/1‑120 (MQ=255)
          gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATC‑TATTTTTTTATTTTTTTATCTTCAAAAAT‑AAAAAAAAAAAAAtacacata                                                                                                                        >  1:5402461/1‑121 (MQ=255)
          gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTATTTATC‑TATTTTTTTATTTTTTTATATTAACAAAT‑Aaaaaaaaaaaaaaaaaataa                                                                                                                        >  2:1471070/1‑120 (MQ=255)
          gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACAATAAACTTAATAATTATTATAATTTATATCATCTTTATC‑TATTATTTTATATTTTTATATTAAAAAAT‑AAAAAAAAAAAAAtaaaaata                                                                                                                        >  1:2351609/1‑121 (MQ=255)
          attAGTGTAAATACTAGAGTTAATGTAATTTAAAATACTATAAAATTAATAATTCTTATAATGTAGATCCTCTTTATC‑TATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAACAATCCCCtt                                                                                                                         <  2:3062703/127‑1 (MQ=255)
           ttAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAtaaaataaa                                                                                                                       >  1:5262271/1‑120 (MQ=255)
           ttAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATC‑TATATTTTAATTTAATTAACTTCACAAAT‑AAAAAAAAAACAAAcccaaaaa                                                                                                                       >  2:1795169/1‑123 (MQ=255)
           ttAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTTATC‑TATATTTTTAATTATTTATCTTCACAAAT‑Aaaaaaaaaaaaaaaaaaaaaa                                                                                                                       >  2:4588124/1‑119 (MQ=255)
           ttAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATacccataa                                                                                                                       >  1:5457250/1‑124 (MQ=255)
           ttAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCttaa                                                                                                                       <  1:5969813/128‑3 (MQ=255)
           ttAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGAAGATCATCGTGATC‑TATTTTTTTATTTTTATATCTTCACAAAA‑AAAAAAACAACAAtaacattaa                                                                                                                       >  2:3421316/1‑120 (MQ=255)
            tAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTATTTTATATTCAAAAAT‑AAAAAAAAAAAAAACACCtaaaa                                                                                                                      >  2:5301091/1‑124 (MQ=255)
             aGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCttaaaa                                                                                                                     >  2:761137/1‑124 (MQ=255)
                gtAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATcaccataaaaatt                                                                                                                  >  1:6148960/1‑119 (MQ=255)
                 tAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTAATTTGATTATCTTCACAAAT‑AAAAAAAAAACAAACCCCtaaaaaataa                                                                                                                 >  2:1641328/1‑119 (MQ=255)
                    ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAATCCAC‑‑Ttaaaaattaaaa                                                                                                            >  2:2399330/1‑128 (MQ=255)
                    ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAATCACC‑‑Ttaaaaattaaaa                                                                                                            >  1:6245480/1‑128 (MQ=255)
                    ataataGAGTTAAGGTAAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCACCtt‑‑‑aaaaataaaaa                                                                                                           >  2:6473670/1‑128 (MQ=255)
                          gagTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATCCTCGTAATC‑TATTTTTTTATTATAATATCTAAAAAAAT‑AAAAAAAAAACAATCAAC‑‑TTAAAAAATaaaaaaaaaa                                                                                                      >  1:2880345/1‑128 (MQ=255)
                           atttAATGTTTATTAAAAAACAATAAAATTAATAAATTATATAATTTTTATCCACGTTTTA‑TATTTTTTTTTTTTTTTATATTCACAAAT‑AAAAAAAAAACAATCCCC‑‑ATAAAAATTaaaaaaaaaaa                                                                                                     <  1:3845277/126‑1 (MQ=255)
                           agTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑‑TAAAAAATtaaaaaaaaaaa                                                                                                    >  2:5702372/1‑128 (MQ=255)
                           agTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTATATCTTCACAAAT‑AAAAAAAAAACAATCCC‑‑‑ATAAAAAATtaaaaaaaaaaa                                                                                                    >  2:3599450/1‑128 (MQ=255)
                            gTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATACCC‑‑TTAAAAATTaaaaaaaaaaaa                                                                                                    >  2:6182650/1‑128 (MQ=255)
                              tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaa                                                                                                  >  2:5630837/1‑128 (MQ=255)
                               aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTTATC‑TAATTATATATATATTTATCTTAACAAAT‑AAAAAAAAAAAAA‑‑AAAAAATAAAAATTaaaaaaaaaaaaaaa                                                                                                 >  1:4454871/1‑128 (MQ=255)
                               aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTATTATTTGTTTATATTAAAAAAT‑AAAAAAAAAAAAATAC‑‑‑AATAAAAAATtaaaaaaaaaaaaaaa                                                                                                >  1:6841779/1‑128 (MQ=255)
                               aaGGTTAATTAAAATACAATAAACTTAATAATTCTTATAATGTATATCCTCGAAATC‑TAATTTTTAATATTTTAATCTTCACAAAA‑AAAAAAAAAAAAAACCACTAaaaaaaaaaaaaaaaaaaaaaa                                                                                                   >  2:6731972/1‑128 (MQ=255)
                                 ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATCCTCGTGATC‑TATTATATTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAATCACC‑‑TTAAAAATTaaaaaaaaaaaaaaaaa                                                                                               >  2:5389052/1‑128 (MQ=255)
                                 ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATC‑TATTTTTTAAATATTTTATATTCAAAAAT‑AAAAAAAAAAAAATCAC‑‑‑ATAAAAAATaaaaaaaaaaaaaaaaaa                                                                                              >  2:4694092/1‑128 (MQ=255)
                                 ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAACCCC‑‑‑TAAAAAATtaaaaaaaaaaaaaaaaa                                                                                              >  2:6572077/1‑128 (MQ=255)
                                 ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAACCACTTaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                 >  2:3917520/1‑128 (MQ=255)
                                 ggTTAATTAAAATACCATAAAATTAATAATTATTATAATGTATATAATATTAATC‑TATATTTTTATTTTTTTATCTTCACAAAA‑AAAAAAAAAACAATCAACATaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                 >  2:5181061/1‑128 (MQ=255)
                                  ttttaataaAAAACAATAAACTTAATAATTCTTATTATTTTTTTCCTTGGGTTT‑TATTTTTTTATTTTTTTATATTAAAAAAT‑AAAAAAAAAAAAAACCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaa                                                                                              <  2:856044/122‑1 (MQ=255)
                                     aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TAAAAAATTaaaaaaaaaaaaaaaaaaaaa                                                                                           >  2:634162/1‑128 (MQ=255)
                                     aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTATTTATCTTCACAAAT‑AAAAAAAAAACAATCCC‑‑ATTAAAAATTaaaaaaaaaaaaaaaaaaaaa                                                                                           >  2:5583306/1‑128 (MQ=255)
                                     aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATATGTTTATCTTCACAAAT‑AAAAAAAAAACAAACCCC‑‑‑TAAAAAATaaaaaaaaaaaaaaaaaaaaaa                                                                                          >  2:6004979/1‑127 (MQ=255)
                                      attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaaaaa                                                                                          >  2:5851251/1‑127 (MQ=255)
                                       ttaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaaaaaaa                                                                                        >  2:6673186/1‑125 (MQ=255)
                                        taaAATACCATAAACTTAATAATTCTTATAATTTAGATCCTCGTTATA‑TATTTTTTTATTTGAATATCTTCACAAAT‑AAAAAAAAAAAAATACAC‑‑TAAAAAATTaaaaaaaaaaaaaaaaaaaaaaaa                                                                                        >  2:3201045/1‑125 (MQ=255)
                                        aaaaaaaaaaaaaaaTTAAAAATTTTTATAATTTTGTTACTCTTTTTT‑TTTTTTTTTTTTTTTTTATTTTAAAAAAA‑AAAAAAAAAAAAATCCCCTTT‑‑AAAATTAAAAAAAAAAAAAAAAAAAAACTa                                                                                        <  2:5947805/117‑1 (MQ=255)
                                          aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                      >  1:5864906/1‑123 (MQ=255)
                                          aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                      >  2:2107835/1‑123 (MQ=255)
                                          aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTaaa                                                                                      >  1:6649430/1‑128 (MQ=255)
                                             ttacATAAACTTAAAAATTATTATTATTTTGAAACTATTTTTC‑TAATTTTTTATTTTTTTATATTAAAAAAA‑AAAAAAAAAAAAATACCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAaaac                                                                                   <  1:2378977/125‑1 (MQ=255)
                                             tACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAATaaaaaaaaa                                                                                   >  1:5545368/1‑127 (MQ=255)
                                              aacATAAAAATAATTATTCTTAAAATTGATTTACTCGTTTAA‑TATTTTTTTATTTTTTTAACTTAACAAAA‑AAAAAAAAAAAAATACCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                  <  1:5115678/126‑1 (MQ=255)
                                                    taattAATAATTAAAATAATGTACATCATCTTGTTA‑TATTTTTTTATTTTTTTATCTTAAAAAAA‑AAAAAAAAAACAAACCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                           <  2:3737121/125‑1 (MQ=255)
                                                    aaCATAATAATTATTATAATTTATATCCTCTTTATC‑TATTTTTTTATTTTTTTATATTAAAAAAA‑AAAAAAAAAAAAATCCCCAT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                           <  1:1464328/128‑1 (MQ=255)
                                                     acataataaTTCTTATAATTGTTCTCCTCGTGATCATATTTTTTT‑TTTTTTTTTTTTACCAAAA‑AAAATAAAAAACATGCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                           <  2:6797993/125‑1 (MQ=255)
                                                     aatttataatTATTATAATTTATATTCTATTTTTT‑TATTTTTTTATTTTTTTAAATTAAAAAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                           <  1:5625146/123‑1 (MQ=255)
                                                        taataaTTAATATAATTTATATAATTTTTATA‑TTTTTTTTTTTTTTTTTATATTAAAAAAA‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTc                                                                       <  1:134580/128‑1 (MQ=255)
                                                          attatTCTTATAATTGAGATCCTTGTGATC‑ATATTTTTTATTTTTTTATATTAAAAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCt                                                                      <  1:4017406/125‑1 (MQ=255)
                                                                attATAATTTATATCCTATTTATA‑TATTTTTTTATTTTTTTAAATTTAAAAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAAt                                                                <  1:5675835/127‑1 (MQ=255)
                                                                             tttatttttttatatttttttattttttTATATTAAAAAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAc                                                    <  2:5767536/116‑1 (MQ=255)
                                                                              aatattttatatATTTTTTTATTTTTATAATTAAAAAAAA‑TAAAAAAAAAAAATACCATTT‑‑AAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAATCTCTATTTCTTAAAATTCCCTATTATAcc                                                   <  1:1728174/117‑1 (MQ=255)
                                                                               cTCGTGATA‑AATTTTTTTATTTTTTTATATTAAAAAAT‑AAAAAAAAAAAAATCCCC‑TAAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                  <  1:4958143/128‑1 (MQ=255)
                                                                                tttttttttttttttttttttttttttAATTAAAAATT‑ATAAAAAAAATAATTTCATTTT‑‑AAATTTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                                 <  2:4083587/117‑1 (MQ=255)
                                                                                atctttatatatttttttattttttTTATATAACAAAA‑AAAAAAAAAAAAATCCC‑‑ATAAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                                 <  1:3494286/119‑1 (MQ=255)
                                                                                 ctttaTC‑TATTTTATTATTTTTTTATATTAAAAAAT‑TAAAAAAAAAAAATAACCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                             <  1:3092052/124‑1 (MQ=255)
                                                                                   tttttatatttttttattttttTATATTAAAAAAA‑AAAAAAAAAAAAATACCC‑‑TTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                              <  1:919291/122‑1 (MQ=255)
                                                                                    ttactatttttttttttttttTATATTAAAAAAA‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                             <  1:3617947/121‑1 (MQ=255)
                                                                                    gtaaatATTTTTTTTTTTTTTTAACTTCAAAAAA‑AAAAAAAAAACAATCCCC‑‑TAAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                             <  1:6353932/123‑1 (MQ=255)
                                                                                     ttttataatttttAATTTTTTATTATTAAAAAA‑AAAAAAAAAAAAAAACCCATT‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                            <  1:1910723/120‑1 (MQ=255)
                                                                                     aTC‑TATTTTTTTATTTTTTTAAATTAAAAAAA‑AAAAAAAAAAAAAAACCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                           <  1:5732900/128‑1 (MQ=255)
                                                                                      ttttatttttttattttttTATATTAAAAAAT‑AAAAAAAAAAAAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttaa                                          <  2:6106888/125‑2 (MQ=255)
                                                                                           tttttttatttttttaTTTTAAAAAAA‑AAAAAAAAAAAAATCCCATT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                     <  1:4204104/128‑1 (MQ=255)
                                                                                           tttttttatttttttaT‑TTAAAAAAA‑AAAAAAAAAAAAATCCCC‑ATAAAAAATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                      <  2:5245815/128‑1 (MQ=255)
                                                                                            ttttttttttttttATATTTAAAAAA‑AAAAAAAAAAAAAT‑‑ACAATTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                     <  2:1221390/128‑1 (MQ=255)
                                                                                            ttttttttttGTTTAATTTAAAAAAT‑AAAAAAAAAAAAATACCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                     <  1:6205550/128‑1 (MQ=255)
                                                                                            ttttttATTTTTTTAAAATAACAAAT‑AAAAAAAAAAAAATACAC‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                      <  1:1053686/128‑1 (MQ=255)
                                                                                                ttATTTTTTTAAATTAAAAAAA‑AAAAAAAAAAAAAAAACCCTTAAAAAATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                                   <  1:762688/128‑1 (MQ=255)
                                                                                                 tATTTTTTAATATTCACAAA‑‑AAAAAAAAAAAAATACAC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                               <  1:1780943/128‑1 (MQ=255)
                                                                                                    ttttttATCATAAAAAAT‑AAAAAAAAAAAAAT‑CCCTTTT‑‑AAAAT‑TAAAAAAAAAAAAAAAAAAACTTAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                           <  2:798671/125‑1 (MQ=255)
                                                                                                      ttttataataaaaaaa‑aaaaaaaaaaaaaaACCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                           <  1:1965319/116‑1 (MQ=255)
                                                                                                      ttttATATTTAAAAAA‑AAAAAAAAAAAAATAACC‑‑TTAAAAAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGatat                          <  1:6520537/127‑1 (MQ=255)
                                                                                                       tttttttttaaaaaT‑AAAAAAAAAATATTTCCC‑TTTAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                           <  1:5340534/117‑1 (MQ=255)
                                                                                                         tttttataaaaaa‑aaaaaaaaaaaaaaaaCCATATAAAAAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                         <  1:1617914/119‑1 (MQ=255)
                                                                                                          tattaaaaaaaa‑aaaaaaaaaaaaATACCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGa                       <  1:2128563/120‑1 (MQ=255)
                                                                                                          atataaaaaaaT‑AAAAAAAAAAAAATACC‑‑ATTAAAAAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGAc                      <  1:1212318/120‑1 (MQ=255)
                                                                                                             ttCAAAAAT‑AAAAAAAAAAAAATAAC‑‑ATTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACat                    <  1:3232493/128‑1 (MQ=255)
                                                                                                              attaaaaa‑aaaaaaaaaaaaaaaaCCCTTAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                     <  1:4743352/124‑1 (MQ=255)
                                                                                                               aaaaaaa‑aaaaaaaaaaaaATCCCC‑‑TTAAAAAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataat                 <  1:6011816/125‑1 (MQ=255)
                                                                                                                aaaaaT‑AAAAAAAAAAAAAAACCC‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataa                  <  1:5908006/126‑1 (MQ=255)
                                                                                                                            aaaaaCAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAata     <  1:2234500/128‑1 (MQ=255)
                                                                                                                                 |                                                                                                                                
AAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTTTTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATAT  >  CP016816/202350‑202605

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑