Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816202,4940AT54.9% 40.0 / inf 517intergenic (+272/‑403)JCVSYN2_00840/JCVSYN2_00845hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand):  ref base A (73/160);  new base T (101/183);  total (174/343)
Fisher's exact test for biased strand distribution p-value = 3.50e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.76e-02

Only 100 of 618 total aligned reads displayed.

ATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATCCCCTTTTAAAA‑AAT‑AAAAAAAAAAAAAAAAAAAAACTA‑AAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATA‑TTGACATAATATATATCTAATATATATAATACTATATTGCT  >  CP016816/202370‑202621
                                                                                                                               |                                                                                                                                  
ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAC‑AAAT‑AAAAAAAAAAAAATCCAC‑‑Ttaaaa‑att‑aaaa                                                                                                                              >  2:2399330/1‑128 (MQ=255)
ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAC‑AAAT‑AAAAAAAAAAAAATCACC‑‑Ttaaaa‑att‑aaaa                                                                                                                              >  1:6245480/1‑128 (MQ=255)
  aataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTCTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AAA‑AAT‑aaaaaaa                                                                                                                           >  2:4461690/1‑128 (MQ=255)
     agagTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATCCCAAT‑‑‑AAA‑AAT‑aaaaaaaaaa                                                                                                                        >  2:6470038/1‑128 (MQ=255)
      gagTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAC‑CAAT‑AAAAAAAAAACACACCCC‑‑TTAAAA‑ATT‑aaaaaaaaaa                                                                                                                        >  2:6011816/1‑128 (MQ=255)
       agTTAAGGTTAATTAAAATACAATAAACTTAATAATTCTTATAATGTAGATCATCTTGATCTATTTTTTTATTTGTTTATCTTCAC‑AAAT‑‑AAAAAAAAACAATCCAC‑‑TTAAAA‑ATT‑aaaaaaaaaaaa                                                                                                                      >  1:5018339/1‑128 (MQ=255)
         ttAAGGTTAATTAAAATACCATAAACTTAATAAATCATATAATGTATATCATCTAAATCTATAATAATATAAATTAATCTTCAC‑AAAT‑AAAAAAAAAAAAAACC‑‑‑AAAAAAA‑AAT‑aaaaaaaaaaaaaa                                                                                                                    >  2:1349530/1‑128 (MQ=255)
         ttAAGGTTAATTAAAATACCATAAACTTAATAAATCATATAATGTAGATCCTCGTGATCTAATATTTTATTTGTTTATCTTCAC‑AAAT‑AAAAAAAAAAAAATCCC‑‑‑ATAAAA‑AAT‑aaaaaaaaaaaaaa                                                                                                                    >  2:488228/1‑128 (MQ=255)
          tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATATTTTTATCTTAAC‑AAAT‑AAAAAAAAAAAAAT‑‑‑AAAATAAAA‑AAT‑aaaaaaaaaaaaaaa                                                                                                                   >  1:4332343/1‑128 (MQ=255)
          tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAA‑ATT‑aaaaaaaaaaaaaa                                                                                                                    >  2:5663310/1‑128 (MQ=255)
          tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTAATCAATTTTTTTATTTTTATATCTACAC‑AAAT‑AAAAAAAAAAAAATAAAC‑‑‑AAAAA‑AAT‑aaaaaaaaaaaaaaa                                                                                                                   >  2:83051/1‑128 (MQ=255)
          tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATAAAGATAATCGTTATATATTTATTTATTTATATATATAAAA‑AAAT‑AAAAAAAAAAAAAAAAC‑‑ATAAAAA‑AAT‑aaaaaaaaaaaaaa                                                                                                                    >  1:5685778/1‑128 (MQ=255)
           aatgTTAATTAAAATAACATAAAATAAATAATTATAATAATTTAAATAATATTTAATTATTTTTTTATTTTTTTATCATAAC‑AAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAA‑ATT‑aaaaaaaaaaaaaaa                                                                                                                   <  1:993742/125‑1 (MQ=255)
           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATAATCGTGATCTATTTTTTTATTTTTTTATCTTAAA‑AAAT‑AAAAAAAAAAAAAT‑‑‑AAAATAAAA‑AAT‑taaaaaaaaaaaaaaa                                                                                                                  >  1:4827751/1‑128 (MQ=255)
           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATCCCC‑‑ATAAAA‑ATT‑aaaaaaaaaaaaaaa                                                                                                                   >  1:3526138/1‑128 (MQ=255)
           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATCAACTT‑‑‑AAA‑AAT‑aaaaaaaaaaaaaaaa                                                                                                                  >  1:2754513/1‑128 (MQ=255)
            aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAA‑ATT‑aaaaaaaaaaaaaaaa                                                                                                                  >  1:5252771/1‑128 (MQ=255)
            aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAAACACC‑‑‑TAAAA‑AAT‑taaaaaaaaaaaaaaaa                                                                                                                 >  2:3921465/1‑128 (MQ=255)
             ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATTTATATCCTCGTGATCTATAAATATATATTTTTATCTACAA‑AAAT‑AAAAAAAAAACAAACACAAT‑‑‑AAA‑AAT‑aaaaaaaaaaaaaaaaaa                                                                                                                >  2:3140249/1‑128 (MQ=255)
             ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATTTAGATCCTCTTTATCTATTTATTTAATTATTTATCTTCAC‑AAAT‑AAAAAAAAAACAAAAAACTAaaaaaa‑aaa‑aaaaaaaaaaaaaaa                                                                                                                   >  2:4204104/1‑128 (MQ=255)
             ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATCACC‑‑TTAAAA‑ATT‑aaaaaaaaaaaaaaaaa                                                                                                                 >  2:5605569/1‑128 (MQ=255)
             ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATACAC‑‑TTAAAA‑ATT‑aaaaaaaaaaaaaaaaa                                                                                                                 >  1:6532827/1‑128 (MQ=255)
             ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAAACCCC‑‑‑TAAAA‑AAT‑taaaaaaaaaaaaaaaaa                                                                                                                >  2:6572077/1‑128 (MQ=255)
             ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAAACC‑‑‑AATAAAA‑AAT‑taaaaaaaaaaaaaaaaa                                                                                                                >  1:555458/1‑128 (MQ=255)
             ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAC‑AAAT‑‑AAAAAAAAACAAACCCC‑‑ATAAAA‑ATT‑aaaaaaaaaaaaaaaaaa                                                                                                                >  2:2059072/1‑128 (MQ=255)
               ttaattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATATGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATCACATT‑‑‑AAA‑AAT‑aaaaaaaaaaaaaaaaaaaa                                                                                                              >  1:5862033/1‑128 (MQ=255)
               ttaattaaAATACCATAAACTTAATAATTATTATAATGTAGATCCTCGTTATCTAATTTTTTATTTTTTTATCTTCAC‑AAAT‑AAAAAAAAAAAAAACAAC‑‑‑TAAAA‑AAT‑aaaaaaaaaaaaaaaaaaaa                                                                                                              >  1:6764707/1‑128 (MQ=255)
                taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCAATTTTTTTATTTTTTTATCTACAC‑AAAT‑AAAAAAAAAACAAACCCC‑‑‑AAAAA‑AAT‑aaaaaaaaaaaaaaaaaaaaa                                                                                                             >  2:3401187/1‑128 (MQ=255)
                  attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTATATTTTTTTATCTTCAC‑AAAT‑AAAAAAAAAACAAACCCC‑‑AAAAAA‑AAT‑aaaaaaaaaaaaaaaaaaaaaa                                                                                                            >  2:1816373/1‑127 (MQ=255)
                   ttaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAC‑AAAT‑‑AAAAAAAAACAATCCCC‑‑TTAAAA‑ATT‑aaaaaaaaaaaaaaaaaaaaaaaa                                                                                                          >  2:6673186/1‑125 (MQ=255)
                    taaAAAACAAAAAAATTAAAAAATATTAAAATTTATATCCTCGTTATATTTTTTTTTTTTTGTTTATCTTCAA‑AAAA‑AAAAAAAAAAAAATACCC‑‑TTAAAA‑ATT‑AAAAAAAAAAAAAAAAAAAAACTa                                                                                                          <  2:5950397/128‑1 (MQ=255)
                     aaaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTATATATGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATCCC‑‑ATTAAAA‑ATT‑aaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                         >  2:6317797/1‑124 (MQ=255)
                        aTACCATAAACTTGATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAA‑ATT‑AAAAAAAAAAAAAAAAAAACACaa‑aaaa                                                                                                     >  2:681201/1‑128 (MQ=255)
                          tactaataattAATAATTTTTATAATTTTTATCATCGTTTTAATTTTTTTTTTTTTTTTATATTAAA‑AAAT‑TAAAAAAAAAAAATCCCC‑‑TTAAAA‑ATT‑AAAAAAAAAAAAAAAAAAAAACTA‑Aaaaca                                                                                                   <  2:1499612/119‑1 (MQ=255)
                          taaaTAAAATTATAAATTTTTATAAATTATAACCTCGTTTTATATTTTTTTATTTTTTTAAATTAAC‑AAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAAA‑ATT‑AAAAAAAAAAAAAAAAAAAAACTA‑Aaaaca                                                                                                   <  1:2134414/125‑1 (MQ=255)
                           aaaTAAAATTAATAATTATTATAATTTATATACTAGTTATCTATTTTTTTATTTTTTTATTTTAAA‑AAAT‑AAAAAAAAAACAATCCCC‑TTAAAAA‑TTA‑AAAAAAAAAAAAAAAAAAAAACTA‑Aaaaca                                                                                                   <  1:5295600/126‑1 (MQ=255)
                             aTAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATCCAC‑TTAAAAA‑TTA‑AAAAAAAAAAAAAAAAAAAAAATA‑aaaaaaaa                                                                                                 >  1:1362468/1‑128 (MQ=255)
                             aTAAAATTTATAATATTTATAAATTATAACATCTTTATCTATTTTTTTATTTTTTTATATTCAA‑AAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAAA‑ATT‑AAAAAAAAAAAAAAAAAAAAACTA‑Aaaacaaac                                                                                                <  1:5964496/128‑1 (MQ=255)
                              tAAACTTAATAATTCTTAATATGTAGAACGTTGTGATATATTTTTTTATTTTTTTAACTTAAA‑AAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAAA‑ATT‑AAAAAAATAAAAAAAAAAAAACTA‑AAAACAAAct                                                                                               <  2:6746771/128‑1 (MQ=255)
                                 aattAATAATTATTTTAATTTATATACTATTTATATATATTTTTATTTTTTTATAATAAA‑AAAA‑AAAAAAAAAAAAAAACCC‑‑TTAAAA‑ATT‑AAAAAAAAAAAAAAAAAAAAACTA‑AAAACAAACTCTa                                                                                            <  1:2209449/126‑1 (MQ=255)
                                 aattAAAAAATATTTTAATTTATATACTCGTTATATATTTTTTTTTTTTTTTATATTCAA‑AAAA‑AAAAAAAAAAAAATCCCC‑TTAAAAA‑TTA‑AAAAAAAAAAAAAAAAAAAAACTA‑AAAACAAActct                                                                                             <  1:823374/126‑1 (MQ=255)
                                   ataataaATATTAAAAATTATATACTAGTGATCTATTTTTTTATTTTTTTATATTAACAAAAA‑AAAAAAAAAACAATCCCC‑TTAAAAA‑TTA‑AAAAAAAAAAAAAAAAAAAAACTA‑AAAACAAACTCTa                                                                                            <  1:2307743/127‑1 (MQ=255)
                                    taataaTTTTTATAATTTTTATACTTGTTTTATTTTTTTTTTTTTTTTTTAATTAAA‑AAAA‑AAAAAAAAAAAAATCCC‑‑‑ATAAAA‑AAT‑‑TAAAAAAAAAAAAAAAAAAACTA‑AAAACAAACTCTATTTCt                                                                                       <  2:4634806/128‑1 (MQ=255)
                                    taataaTTCTTATAATGTAGATCAACGTGATCTAATTATATATAAAAAAATATTCAC‑AAATAAAAAAAAAAACAATCACCTTAAAAAT‑TAA‑AAAAAAAAAAAAAAAAAaaaacaa‑aaaacaacaataa                                                                                            >  2:6202592/1‑122 (MQ=255)
                                    taaaaaTTATTATAATTGATATCATCTTGATCTATTTTTTTATTTTTTTATCTTAAA‑AAAA‑AAAAAAAAAACAAAACCCTT‑‑‑AAA‑AAT‑‑‑TAAAAAAAAAAAAAAAAAACTA‑AAAACAAACTCTATTTCtt                                                                                      <  1:5487365/128‑1 (MQ=255)
                                     aataatTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAA‑ATT‑AAAAAAAAAAAAAAAAAAAAACAATAAAAACAACTCTAttg                                                                                         >  2:3601842/1‑127 (MQ=255)
                                                  aTGTAGAACCTCTTTATATATTTTTTTATTTTTTTATCTTAAA‑AAAT‑AAAAAAAAAAAAAACCCCTT‑‑‑AAA‑AAT‑‑‑‑TAAAAAAAAAAAAAAAAACTA‑AAAACAAACTCTATTTCTTAAAATTCCCtattat                                                                       <  1:1499750/128‑1 (MQ=255)
                                                   tGTATATCCTAGTTTTATATTTTTTTATTTGTTTATCTTCAA‑AAAA‑AAAAAAAAAAAAATCCCCAT‑‑‑AAA‑AAT‑TAAAAAAAAAAAAAAAAAAAACTA‑AAAACAAACTCTATTTCTTAAAATTCCCtatt                                                                         <  1:6470038/128‑1 (MQ=255)
                                                     tttatatagctGATTTATTTTTTTATTTTTTTTTTTTAAA‑AAAA‑AAAAAAAAAAAAATACCC‑‑TTAAAA‑ATT‑AAAAAAAAAAAAAAAAAAAAACTA‑AAAACAAACTCTATTTCTTAAAATTCCCtatta                                                                        <  2:5778969/118‑1 (MQ=255)
                                                     tttatagtctttaTCTATTTTTTTATTTTTTTATATTAAA‑AAAA‑AAAAAAAAAAAAAATACCCTTAAAAA‑ATA‑AAAAAAAAAAAAAAAAAAAAACTA‑AAAACAAACTCTATTTCTTAAAATTCCCtat                                                                          <  1:1620542/116‑1 (MQ=255)
                                                       ttaacTCGTTATATATTTTTTTTTTTTTTTAAATTAAA‑AAAA‑AAAAAAAAAAAAATACCCATAAAAAATAAA‑AAAAAAAAAAAAAAAAAAAAACTA‑AAAACAAACTCTATTTCTTAAAATTCCCtatt                                                                         <  1:6131983/124‑1 (MQ=255)
                                                        taagatcttatatatttttttattttttTATATTAAA‑AAAA‑AAAAAAAAAAAAAAACCATAAAAAAA‑TAA‑AAAAAAAAAAAAAAAAAAAAACTA‑AAAACAAACTCTATTTCTTAAAATTCCCtattat                                                                       <  1:5387854/116‑1 (MQ=255)
                                                         tcatttttttCTATTTTTTTTTTTTTTTATTTTAAA‑AAAT‑AAAAAAAAAAAAAAACCC‑‑TTAAAA‑AAT‑AAAAAAAAAAAAAAAAAAAAACTA‑AAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                                    <  1:5821854/119‑1 (MQ=255)
                                                         aatattttatatATTTTTTTATTTTTATAATTAAAA‑AAAA‑TAAAAAAAAAAAATACCATTT‑‑AAA‑ATT‑AAAAAAAAAAAAAAAAAAAAACTA‑AAAACAATCTCTATTTCTTAAAATTCCCTATTATAcc                                                                    <  1:1728174/117‑1 (MQ=255)
                                                          catCGTTATTTATTTTTTTTTTTTTTTATATTAAA‑AAAT‑AAAAAAAAAAAAATCACC‑‑TTAAAA‑AAT‑‑AAAAAAAAAAAAAAAAAAAACTA‑AAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                                                  <  2:5877260/126‑1 (MQ=255)
                                                          actctttttatatttttttattttttTATATTAAA‑AAAA‑AAAAAAAAAAAAATACCCTTTAAAAT‑TAA‑AAAAAAAAAAAAAAAAAAAAACTA‑AAAACAAACTCTATTTCTTAAAATTCCCTATTATAc                                                                     <  1:2369581/118‑1 (MQ=255)
                                                               ttatatatttttttattttttAATATTAAA‑AAAT‑AAAAAAAAAAAAATCACC‑‑TTAAAA‑AAT‑AAAAAAAAAAAAAAAAAAAAACTA‑AAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                              <  1:311333/123‑1 (MQ=255)
                                                                 aTCTATTTTTTTATTTTTTTAAATTAAA‑AAAA‑AAAAAAAAAAAAAAACCC‑‑TTAAAA‑ATT‑AAAAAAAAAAAAAAAAAAAAACTA‑AAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                                            <  1:5732900/128‑1 (MQ=255)
                                                                  tatatttttttattttttTATATTAAC‑AAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AAA‑AAT‑‑‑‑‑TAAAAAAAAAAAAAAAACTA‑AAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                                      <  1:4477703/126‑1 (MQ=255)
                                                                     aTTTTTTTTTTTTTTTTTATTAAA‑AAAA‑AAAAAAAAAAAAATCCCC‑‑ATAAAA‑ATA‑AAAAAAAAAAAAAAAAAAAAACTA‑AAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                                        <  2:5712441/128‑1 (MQ=255)
                                                                      ttttttttttttttTATATTTAA‑AAAA‑AAAAAAAAAAAAATCACAATT‑‑AAA‑ATT‑TAAAAAAAAAAAAAAAAAAAACTA‑AAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                                       <  1:6209226/128‑1 (MQ=255)
                                                                      tttttttattttttttatATAAA‑AAAA‑AAAAAAAAAAAAATACC‑‑AATAAAA‑ATT‑AAAAAAAAAAAAAAAAAAAAACTA‑AAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                                       <  1:3065034/128‑1 (MQ=255)
                                                                      tttttttATTT‑TTTATAATAAA‑AAAA‑AAAAAAAAAAAAAAAACC‑‑TTAAAA‑ATT‑AAAAAAAAAAAAAAAAAAAAACTA‑AAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                                      <  2:165665/128‑1 (MQ=255)
                                                                      ttattttttttttttATAATAAA‑AAAA‑AAAAAAAAAAAAATAACCTT‑‑‑AAA‑AAT‑‑TAAAAAAAAAAAAAAAAAAACTA‑AAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                                     <  1:3216145/125‑1 (MQ=255)
                                                                       ttttttATTTTTTTAAATTAAC‑AAAT‑AAAAAAAAAAAAATACCC‑‑TTAAAA‑AAT‑‑‑AAAAAAAAAAAAAAAAAAACTA‑AAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                                                    <  2:5194082/128‑1 (MQ=255)
                                                                       ttttttATTTTTTTAAAATAAC‑AAAT‑AAAAAAAAAAAAATACAC‑TTAAAAA‑TTA‑AAAAAAAAAAAAAAAAAAAAACTA‑AAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                                       <  1:1053686/128‑1 (MQ=255)
                                                                        ttttttttttttTATTTTAAA‑AAAT‑AAAAAAAAAAAAATACCCATT‑‑AAA‑ATT‑AAAAAAAAAAAAAAAAAAAAACTA‑AAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                                     <  1:2512056/128‑1 (MQ=255)
                                                                          tttatttttttattttAAA‑AAAT‑AAAAAAAAAAAAAAAACC‑ATTAAAA‑TTA‑AAAAAAAAAAAAAAAAAAAAACTA‑AAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                                                    <  2:6238517/128‑1 (MQ=255)
                                                                           ttATTTTTTTTTATTTAA‑AAAT‑AAAAAAAAAA‑AAT‑‑TCAATTAAAA‑ATT‑AAAAAAAAAAAAAAAAAAAAACTA‑AAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                                                 <  1:4600463/128‑1 (MQ=255)
                                                                            ttttttttTATCATCAC‑AAAA‑TAAAAAAAAAAAATACCC‑‑TTAAAA‑ATT‑AAAAAAAAAAAAAAAAAAAAACTA‑AAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                                                 <  1:374226/126‑1 (MQ=255)
                                                                            tATTTTTTAATATTCAC‑AAA‑‑AAAAAAAAAAAAATACAC‑‑TTAAAA‑ATT‑AAAAAAAAAAAAAAAAAAAAACTA‑AAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                                                <  1:1780943/128‑1 (MQ=255)
                                                                              ttttttTATATTAAA‑AAAA‑AAAAAAAAAAAAAAAACCA‑‑TAAAA‑AAT‑AAAAAAAAAAAAAAAAAAAAACTA‑AAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAg                                               <  1:3625839/128‑1 (MQ=255)
                                                                                  tttATATTAAA‑AAAA‑AAAAAAAAAAAAAAACCC‑‑TTAAAA‑AAT‑AAAAAAAAAAAAAAAAAAAAACTA‑AAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata‑t                                          <  1:1918938/128‑1 (MQ=255)
                                                                                   tttttttttaaaaaa‑aaaaaaaaaaCAATACCCTT‑‑‑AAA‑AAT‑TAAAAAAAAAAAAAAAAAAAACTA‑AAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATA‑tt                                         <  1:4061998/117‑1 (MQ=255)
                                                                                         tcttaaaaa‑aaaaaaaaaaaaaaACCCCTTAAAAA‑ATA‑AAAAAAAAAAAAAAAAAAAAACTA‑AAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATA‑TTGAc                                      <  1:5640815/123‑1 (MQ=255)
                                                                                         attaaaaaT‑AAAAAAAAAAAAAT‑‑TCTATTTAAA‑ATT‑AAAAAAAAAAAAAAAAAAAAACTA‑ACAACAAACTCTATTTCTTAAAATTCCCTATTATAACACATTTTATTTTTAAAATAAGATA‑TTGACat                                    <  2:6142834/123‑1 (MQ=255)
                                                                                           aaaaaaa‑aaaaaaaaaaaaATCCCC‑‑TTAAAA‑AAT‑‑AAAAAAAAAAAAAAAAAAAACTA‑AAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATA‑TTGACataat                                 <  1:6011816/125‑1 (MQ=255)
                                                                                           aaaaaaa‑aaaaaaaaaaaaATAAAC‑TTTAAAA‑ATA‑AAAAAAAAAAAAAAAAAAAAACTA‑AAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATA‑TTGACata                                   <  1:3367219/125‑1 (MQ=255)
                                                                                            aaaaaT‑AAAAAAAAAAAAAAACCC‑TTAAAAA‑TTA‑AAAAAAAAAAAAAAAAAAAAACTA‑AAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATA‑TTGACataa                                  <  1:5908006/126‑1 (MQ=255)
                                                                                             aaaaT‑AAAAAAAAAAAAATCACATT‑‑‑AAA‑AAT‑TAAAAAAAAAAAAAAAAAAAACTA‑AAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATA‑TTGACATAatat                               <  2:2557572/127‑1 (MQ=255)
                                                                                              aaaa‑aaaaaaaaaaaaaaaaCCACATAAAA‑AAT‑‑AAAAAAAAAAAAAAAAAAAACTA‑AAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATA‑TTGACataata                                <  1:662748/128‑1 (MQ=255)
                                                                                                ataaaaaaaaaaaCAATCCCCTT‑‑‑AAA‑AAT‑TAAAAAAAAAAAAAAAAAAAACAA‑AAAACAAACAAAATGAATTAAAATTCCCAAATAAACAAAATTTTATTTTAAAAAAAAAAAA‑TTAACaaataaaat                             >  2:5296926/4‑120 (MQ=255)
                                                                                                 t‑AAAAAAAAAACAATCCCC‑‑TTAAAA‑ATT‑AAAAAAAAAAAAAAAAAAAAAATA‑AAAACAAACTATATTTATTAAAATTCCCTATTATAAAACATTTTAATTTTAAAATAATATT‑TTTACATAatatata                            >  1:5331354/1‑128 (MQ=255)
                                                                                                 t‑AAAAAAAAAACAATCCCC‑‑TTAAAA‑ATT‑AAAAAAAAAAAAAAAAAAAAA‑TA‑AAAACAAACAATATTTATTAAAATTCCCTATTTAACCACAATTTATTTTTAAAAAAATATA‑TTGaaaaaaataaaat                           >  2:787384/1‑116 (MQ=255)
                                                                                                  aaaaaaaaaaaaaATCCCC‑‑TTAAAA‑AAT‑TAAAAAAAAAAAAAAAAAAAACTA‑AAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATA‑TTGACATAatatata                            <  1:1264875/127‑1 (MQ=255)
                                                                                                   aaaaaaaaaaaaATCCCC‑‑ATAAAA‑AAT‑‑AAAAAAAAAAAAAAAAAAAACTA‑AAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATA‑TTGACATAATATATATc                          <  2:5384041/128‑1 (MQ=255)
                                                                                                       aaaaaaaaATCCCC‑TTAAAAA‑TTA‑AAAAAAAAAAAAAAAAAAAAACTA‑AAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATA‑TTGACATAATATATATCTa                        <  1:744454/128‑1 (MQ=255)
                                                                                                          aaaCAATCCCC‑‑TTAAAA‑ATT‑AAAAAAAAAAAAAAAAAAAAA‑AA‑AAAACAAAATCAATTACTTAAAATACCATATTATAACAAAATTATATTTTAAAATAATATA‑TTAAAATAATATATATAAAatata                   >  1:6345556/1‑128 (MQ=255)
                                                                                                              aaaaataccattaaa‑aat‑taaaaaAAAAAAAAAAAAAAACTA‑AAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATA‑TTGACATAATATATATCTAatatat                  <  1:2397723/116‑1 (MQ=255)
                                                                                                               aaatacacttAAAA‑AAT‑‑AAAAAAAAAAAAAAAAAAAACTA‑AAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATA‑TTGACATAATATATATCTAatatatat                <  1:2855443/120‑1 (MQ=255)
                                                                                                                 atacacataaaa‑attaaaaaaAAAAAAAAAAAAAAAACTA‑AAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATA‑TTGACATAATATATATCTAatatatat                <  1:298247/121‑1 (MQ=255)
                                                                                                                  tacacttAAAA‑ATT‑TAAAAAAAATAAAAAAAAAAACTA‑AAAAAAAACTCTATTTCTTAAAATTACCTATTATACCACATTTTATTTTTAAAATAAGATA‑TTGACATAATATATATCTAATATATataa              <  1:3475330/123‑1 (MQ=255)
                                                                                                                  taaccataaaa‑attaaaaaaAAAAAAAAAAAAAAAACTA‑AAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATA‑TTGACATAATATATATCTAAtatatata               <  1:5134298/122‑1 (MQ=255)
                                                                                                                   aaccataaaa‑attaaaaaaAAAAAAAAAAAAAAAACTA‑AAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATA‑TTGACATAATATATATCTAATATATataa              <  2:5252771/123‑1 (MQ=255)
                                                                                                                     taaaaaaa‑taa‑aaaaaaAAAAAAAAAAAAAAACTA‑AAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATA‑TTGACATAATATATATCTAATATATATAATAc           <  2:5517764/124‑1 (MQ=255)
                                                                                                                     ccttaaaa‑att‑aaaaaAAAAAAAAAAAAAAAACAA‑AAACCAAAAACATATTCTTAAAAAGCCATATTATACCAAAATAAATATTAAAAAAAATATA‑TTGACAAAATATAAAACTAatataaaaaaata           >  1:3908550/3‑120 (MQ=255)
                                                                                                                     cattAAAA‑AAT‑AAAAAAAAAAAAAAAAAAAAACTA‑AAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATA‑TTGACATAATATATATCTAATATATATAATAc           <  1:1979437/126‑1 (MQ=255)
                                                                                                                      cttaaaa‑att‑aaaaaAAAAAAAAAAAAAAAACTA‑AAAAAAAACGATTTTTATTTTAATTGAGTAATATGAATCTTTTATTTTTTAAAATAATATATTTGAAAT‑ATTTATATCTAATTTATataataat          >  2:1909519/2‑126 (MQ=255)
                                                                                                                        taaaa‑att‑aaaaaaAAAAAAAAAAAAAAACTA‑AAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATA‑TTGACATAATATATATTAGATATAtattatgtcaa        <  1:6076345/128‑6 (MQ=255)
                                                                                                                          aaa‑aat‑taaaaaAAAAAAAAAAAAAAAATA‑AAAACAAACTCTATTTATTAAAATTCCCTATTATACAACATTTTATTTTTAAAATAAGATA‑TTGAAATAATATATTTCTAATATATATAAAAatatat      >  1:687430/1‑128 (MQ=255)
                                                                                                                               |                                                                                                                                  
ATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATCCCCTTTTAAAA‑AAT‑AAAAAAAAAAAAAAAAAAAAACTA‑AAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATA‑TTGACATAATATATATCTAATATATATAATACTATATTGCT  >  CP016816/202370‑202621

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑