New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP016816 = 203895576 (0.260)331 (0.130)
+TTT		 96/214 17.8 34.4% intergenic (+279/+179) JCVSYN2_00845/JCVSYN2_00850 lipoprotein/inorganic diphosphatase
?CP016816 203896 = 633 (0.250)intergenic (+280/+178) JCVSYN2_00845/JCVSYN2_00850 lipoprotein/inorganic diphosphatase
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 1042 total aligned reads displayed.

TTAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑T‑TG‑‑‑‑TTTTTTTTTTT‑TT‑TTT‑GT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGA  >  CP016816/203769‑204023
                                                                                                                                     |                                                                                                                                   
ttAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTTTACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑T‑TG‑‑‑‑t                                                                                                                                     >  2:4981730/1‑128 (MQ=255)
 tAATTTTTTTTATAAAAAAAAATAAAAATTTTTAATTTAAATCAATTTTTAAAAAATTTTATTTTTTTTGTTTTTTTTTTTAATTTTAAAAATTTAAAATCTTTTAAATTGTTTTTTTTTTGC‑T‑tt‑‑‑‑tt                                                                                                                                    <  2:822003/128‑1 (MQ=255)
   aatttttttATAAAAAAAAAAAAAAATTTTTAATTTAAATTCTTTTTTAAAAAATCCTTTTTTTTTTGTTTTTTTTTATAATTATAAAAATTAAAACGCTTTAAAATTGTTTTTTTTTGGG‑T‑tt‑‑‑‑tttt                                                                                                                                  <  2:374784/126‑1 (MQ=255)
      ttttttATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑T‑TG‑‑‑‑ttttttt                                                                                                                               >  1:4504725/1‑128 (MQ=255)
      ttttttATAAAAAAAAATAAAAATTTTTCATTTAAAGCAATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑T‑AG‑‑‑‑ttttttt                                                                                                                               >  2:1062159/1‑128 (MQ=255)
       tatttATAAAAAAAAAAAAAATTTTTTAATTAAAAGCCATTTCTAAAAAACCCTAGGTTCTAGGCTTTTTATTAATATTATCAAAATTACACCGCTTTCAAAGTGTATTTTTTAGGC‑T‑TG‑‑‑‑tttttttt                                                                                                                              <  2:2287721/126‑1 (MQ=255)
        ttttATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACACTTTCAAAGTGTATTTTTTAGTC‑T‑TG‑‑‑‑ttttttttt                                                                                                                             >  1:4360014/1‑128 (MQ=255)
         ttataaaaaaaaaaTAAAAATTTTTAATTAAAAGCACTTTGTAAAAATCCCTATTTTAAATGATTTTTATTAAAATTTTCAAAATTACAACGCTTTAAAATTTTTTTTTTTTGGC‑T‑TG‑‑‑‑tttttttttt                                                                                                                            <  2:1927751/123‑1 (MQ=255)
           tataAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATGACAACGCTTTCAAAGTGTATTTTTTAGGC‑T‑TG‑‑‑‑tttttttttat‑t                                                                                                                         >  2:3570606/1‑128 (MQ=255)
             taAAAAAAAATAAAAATTTTTAATTTAAACCCCTATTTAAAAAATCCTATGTTCTAGGCTTTTTATTATAATTATCAACATTACAACGCTTTCAAATTGTATTTTTTAGGC‑T‑TG‑‑‑‑ttttttttttt‑tt‑t                                                                                                                      <  1:5279683/128‑1 (MQ=255)
              aaaaaaaaaTAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATTCTTATCAACAGTACAAAGCTTTCAAAGTGTATTTATTAGGC‑t‑tg‑‑‑‑ttttttttgtt‑tt‑tt                                                                                                                     >  1:821649/1‑128 (MQ=255)
              aaaaaaaaaTAAAAATTTTTAATTTAAATCCATTTTTAAAAAACCATATTTTCTAGGCTTTTTATTATACTTATCAAAAATACAACGCTTTTAAATTTTATTTTTTATGG‑T‑TG‑‑‑‑ttttttttttt‑tt‑tt                                                                                                                     <  2:4369423/128‑1 (MQ=255)
               aaaaaaaaaaaaaaTTTTTTATTTAAATCCATTTTTAAAAAATCCAATGTTGAATTCTTTTTATTTTAATTATAAAAATTAAAACGCTTTAAAAGTTTATTTTTTTGGG‑T‑tt‑‑‑‑ttttttttttt‑tt‑ttt                                                                                                                    <  2:4705139/128‑1 (MQ=255)
                 aaaaaaTAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑T‑TG‑‑‑‑tttttttattt‑tt‑ttttt                                                                                                                  >  2:2639004/1‑126 (MQ=255)
                 aaaaaaTAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑T‑TG‑‑‑‑ctttttttttt‑tt‑ttttt                                                                                                                  >  1:4436819/1‑126 (MQ=255)
                  aaaaataaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑T‑TG‑‑‑‑ttttttttttt‑tt‑tttttt                                                                                                                 >  2:1448121/1‑125 (MQ=255)
                  aaaaataaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑T‑TG‑‑‑‑ttttttttttt‑tt‑ttttgt                                                                                                                 >  1:3072583/1‑125 (MQ=255)
                    aaataaaaatTTTTTTTTTAATTCAATTTGTAAAAAATCCTATTTTTTAGGTTTTTTTTTATACTTATAAAATTTACAACGCTTTAAAATTGTATTTTTTAGGC‑T‑TG‑‑‑‑ttttttttttt‑tt‑ttttgtaa                                                                                                               <  2:246134/128‑6 (MQ=255)
                    aaataaaaatTTTTAAATTAAACACATTTTTAAAAAACCATTTTTTTTTTGCTTTTTATTTTAATTATCAAAATTACAACGCTTTAAAATTGTATTTTTTAGGC‑T‑tt‑‑‑‑ttttttttttt‑tt‑ttttgtaa                                                                                                               <  1:3325789/128‑6 (MQ=255)
                     aataaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑T‑TG‑‑‑‑TTTTTTTTTTT‑TT‑TTT‑TT‑aaaa                                                                                                            >  1:3413739/1‑128 (MQ=255)
                        aaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑T‑TG‑‑‑‑ttttttttttt‑tt‑tttttttaaaat                                                                                                           >  1:4145683/1‑119 (MQ=255)
                         aaaatTTTTTATTTAAATCCATTTGTAAAAAATCCTATGTTTAATGCTTTTTATTATAATTATAAACATTACAACGCTTTCAAATTTTTTTTTTTTGGCTT‑TT‑‑‑‑TTTTTTTTTTT‑TT‑TTT‑GT‑AAAAATa                                                                                                         <  2:3141403/128‑1 (MQ=255)
                         aaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTAAAACGCTTTCAAAGTGTATTTTTTAGGC‑T‑TG‑‑‑‑ttttttttttt‑tt‑ttttttataaata                                                                                                          >  2:5289991/1‑118 (MQ=255)
                         aaaatTTTTAATTTTAATACATTTGTAAAAAATTCTATTTTTTAGTGTTTTTATTTTAATTATAAACAATACAACGCTTTAAAAGTGTTTTTTTTTTGC‑T‑TGT‑‑‑TTTTTTTTTTT‑TT‑TTT‑GT‑AAAAATa                                                                                                         <  2:559969/128‑1 (MQ=255)
                         aaaatTTTTAAATTTAACCCATTTGATAAAAAGCATATTTTCTAGGGTTTTTATTATTATTATAAACAATACAACGCTTTTAAAGTGTTTTTTTTTGGC‑T‑TGTT‑‑TTTTTTTTTTT‑TT‑TTT‑GT‑AAAAAt                                                                                                          <  1:4901671/128‑1 (MQ=255)
                           aatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑T‑TGT‑‑‑TTTTTTTTTTT‑TT‑TTT‑GT‑AAAAATaaa                                                                                                       >  1:4218469/1‑128 (MQ=255)
                             tttttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑T‑TG‑‑‑‑TTTTTTTTTTT‑TT‑TTT‑‑T‑AAAAAAAAAATTa                                                                                                   >  1:1674811/1‑128 (MQ=255)
                              ttttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑T‑TG‑‑‑‑TTTTTTTTTTT‑TT‑TTT‑TT‑TAAAATtaaaatt                                                                                                   >  2:4779911/1‑125 (MQ=255)
                              ttttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑T‑TG‑‑‑‑TTTTTTTTTTT‑TT‑TTT‑TA‑AAAAATAAAAGTa                                                                                                   >  1:1109290/1‑128 (MQ=255)
                               ttttATTTAAATAAATTTGTAAAAAATGTTATGTTCTATTCTTTTTATTATACTTATAAACATAACAACTCTTTCAAATTGTATTTTTTATGCTT‑TT‑‑‑‑TTTTTTTTTTT‑TT‑TTT‑GT‑AAAAATAAAAGTa                                                                                                   <  1:2647773/128‑1 (MQ=255)
                               tttCATTTATATCCATTTTTAAAAAAGCGTTTGTTCTAGTGTTTTTATTTTACTTTTCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑T‑TGT‑‑‑TTTTTTTTTTT‑TT‑TTT‑GT‑AAAAATAAAAGTa                                                                                                   <  1:5040340/128‑1 (MQ=255)
                               attaaTTTAAATCCATTTGTAAAAAAGCCTATGTTCTAGTCTTTTTATTATAATTATCAACATTACAACGCTTTAAAATTGTATTTTTTAGGC‑T‑TGT‑‑‑TTTTTTTTTTT‑TT‑TTT‑GT‑AAAAATAAAAGTa                                                                                                   <  1:658037/124‑1 (MQ=255)
                                  taTTTAAATCCATTTTTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑T‑TG‑‑‑‑TTTTTTTTTTT‑TT‑TTT‑GT‑AAAAATAAAAGTAAGAt                                                                                               <  2:4427142/127‑1 (MQ=255)
                                   aTTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑T‑TG‑‑‑‑TTTTTTTTTTT‑TT‑TTT‑‑T‑TATAATAAATGTAAAAttt                                                                                             >  2:1589612/1‑128 (MQ=255)
                                    tttAAATACATTTTTAAAAAATCATATTTTTTATTTTTTTTATTATAATTATAAAAATTAAAAAGCTTTCAAATTTTATTTTTTTGGC‑T‑TGT‑‑‑TTTTTTTTTTT‑TT‑TTT‑GT‑AAAAATAAAAGTAAGAtt                                                                                              <  1:5186771/128‑1 (MQ=255)
                                     ttAAATTCATTTTTAAAAAATTATATTTTTTATTATTTTTATTATAATTATCAAAATTAAAAAGATTTAAAAGTTTTTTTTTTAGGC‑T‑TGTT‑‑TTTTTTTTTTT‑TT‑TTT‑GT‑AAAAATAAAAGTAAGAtt                                                                                              <  1:1785063/128‑1 (MQ=255)
                                      tAAATCCATATTTAAAAAATCCTATGTTCTATGTTTTTTATTATACTTATAAAAATTACAACGCTTTCAAAGTGTATTTTTTTGGC‑T‑TGT‑‑‑TTTTTTTTTTT‑TT‑TTT‑GT‑AAAAATAAAAGTAAGATTTg                                                                                            <  2:4537869/128‑1 (MQ=255)
                                      tAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑T‑TG‑‑‑‑TTTTTTTTTTT‑TT‑TTT‑GT‑AAAAATAAAATTTATATTTgg                                                                                           >  1:1883312/1‑128 (MQ=255)
                                        aaGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑T‑TG‑‑‑‑TTTTTTTTTTT‑TT‑TTT‑GT‑AAAAATAAAATTAATATTTTGAt                                                                                         >  1:2861709/1‑128 (MQ=255)
                                           acATTTTTTAAAAATCATATTTTTAATGTTTTTTATTAAAATTATAAAAATTTAAACCCTTTAAAATTTTTTTTTTTTTGC‑T‑TGT‑‑‑TTTTTTTTTTT‑TT‑TTT‑GT‑AAAAATAAAAGTAAGATTTGGATCa                                                                                       <  2:522292/127‑1 (MQ=255)
                                             aTTTTTTAAAAACCATATTTTTTATGTTTTTTTTTTTTATTATAAACTTTAAAACGTTTTTAAATGTTTTTTTTTTTGA‑T‑TT‑‑‑‑TTTTTTTTTTT‑TT‑TTT‑GT‑AAAAATAAAAGTAAGATTTGGATCAAcc                                                                                    <  1:1294563/128‑1 (MQ=255)
                                                tttAAAAAAGCCTATTTTATTTGTTTTTTATTATACTTATAAACATTAAAATTCTTTCAAATTGTTTTTTTTTGGC‑T‑TG‑‑‑‑TTTTTTTTTTT‑TT‑TTT‑GT‑AAAAATAAAAGTAAGATTTGGATCAACCaaa                                                                                 <  2:2713973/126‑1 (MQ=255)
                                                 gTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑T‑TG‑‑‑‑‑TTTTTTTTTT‑TT‑TTT‑GT‑AAAAATAAAAGGAAGATTTGGTTCAACCaaata                                                                               >  1:1190257/1‑126 (MQ=255)
                                                   aaaaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑T‑TGTT‑‑TTTTTTTTTTT‑TT‑TTT‑TT‑AAAAATAAAATTAATATTTGGAACAAACaaaa                                                                                >  2:2005389/1‑128 (MQ=255)
                                                     aaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑T‑TGT‑‑‑TTTTTTTTTTT‑TT‑TTT‑GT‑AAAATTAAAAGTAAGATTTGGAAAAAACaaaaaat                                                                             >  1:5225661/1‑125 (MQ=255)
                                                       aaGCCTATGTTTTAGGCTTTTTTTTATAATTATAAAAATTACAACGCTTTAAAATTTTATTTTTTAGGT‑T‑TGT‑‑‑TTTTTTTTTTT‑TT‑TTT‑GT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACtata                                                                           <  2:5447827/128‑1 (MQ=255)
                                                         gCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑T‑TGT‑‑‑TTTTTTTTTTT‑TT‑TTT‑GT‑AAAAATAAAAATAAGATTTTGATAAACCaaaaatttttc                                                                         >  1:353167/1‑121 (MQ=255)
                                                            atttttttagttttttttttATAATTATAAACATTAAAAAGTTTTTAAATTGTATTTTTTTGGG‑T‑TGT‑‑‑TTTTTTTTTTT‑TT‑TTT‑GT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCaaa                                                                      <  2:3393109/116‑1 (MQ=255)
                                                              tGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑T‑TG‑‑‑‑TTTTTTTTTTT‑TT‑TTT‑TT‑AAAAATAAAATTAAATTTTTGAAAAAACAAAAATATATAaaaaaa                                                                   >  1:5332028/1‑128 (MQ=255)
                                                                ttCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑T‑TGTTT‑TTTTTTTTTTT‑TT‑TTT‑TT‑TTAAATAAAAGTAATATTTGGAACAACAAAAAATATAACaaaaa                                                                    >  1:5406323/1‑128 (MQ=255)
                                                                ttCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑T‑TGTT‑‑TTTTTTTTTTT‑TT‑TTT‑TT‑AATAATAAAATTAATATTTTGAATAAACAAAAATATATCaaaaaa                                                                   >  2:1296390/1‑128 (MQ=255)
                                                                acatAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑T‑TGT‑‑‑TTTTTTTTTTT‑TT‑TTT‑TT‑AAAAATAAAATTAAGATTTGGTTCAACCAAAACTATataaaataaa                                                                  >  1:4634988/4‑128 (MQ=255)
                                                                 tCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑T‑TGT‑‑‑TTTTTTTTTTT‑TT‑TTT‑TT‑AAAAATAAAATTAAGATTTGTATCAACAAAAAatattaaaaataaat                                                                 >  1:3873994/1‑117 (MQ=255)
                                                                  atAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑T‑TG‑‑‑‑TTTTTTTTTTT‑TTATTT‑TT‑AAAAAAAAAATATATATTTTGATAAAAAAAAAAATTATAAAAAAAAtt                                                                >  1:4042672/2‑128 (MQ=255)
                                                                   tAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑T‑TG‑‑‑‑TTTTTTTTTTT‑TT‑TTT‑TT‑AAAAAAAAAAGTAATATTTGGATAAACAAAAAGTAATTAAAAAAAATTaa                                                              >  1:2434320/1‑128 (MQ=255)
                                                                    tttattatttttatAATTATCATAATTACTAAGTTTTATAATTTTATTTTTTTGGT‑T‑TG‑‑‑‑‑TTTTTTTTTT‑TT‑TTT‑GT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTaaaa                                                            <  2:2158208/118‑1 (MQ=255)
                                                                    aGGATTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGTC‑TATT‑‑‑‑ATTTTTTATTT‑TT‑TTT‑AT‑AAAAATAAAATTAAAAATTGTAAAAACAAAAACTAAATAAAAAAAATaaa                                                              >  1:2393571/1‑128 (MQ=255)
                                                                     ggCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑T‑TGT‑‑‑TTTTTTTTTTT‑TT‑TTT‑TT‑AAAAATAAAATTAAAAATTGGAAAAACaaaaaaattaaaaaaaaaattaaa                                                             >  1:754177/1‑128 (MQ=255)
                                                                           ttattaAACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑T‑TG‑‑‑‑TTTTTTTTTTT‑TT‑TTT‑TTAAAAAATAAAATTAAGATTTTGAAAAACTAAAAATATATAAAAAAATATaaaaaaaaa                                                       >  1:5532058/1‑127 (MQ=255)
                                                                              ttatACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑T‑TG‑‑‑‑TTTTTTTTTTTATT‑TTT‑TT‑AAAAAAAAAAATAA‑ATATGTATCAAAAAATCATAAATAACAAAAATTaaaaaaaaataat                                                   >  2:5089632/1‑123 (MQ=255)
                                                                                ttaCTTATTAAAATTAAAATGGTTTTAATTTGTTTTTTTTTGGT‑T‑TGT‑‑‑TTTTTTTTTTT‑TT‑TTT‑GT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAAtagttt                                                  <  1:5464896/127‑1 (MQ=255)
                                                                                ataCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑T‑TGTTT‑TTTTTTTTTTT‑TT‑TTT‑TT‑AAAAATAAAATTAATATTTTGATAAACAAAAAGTATTAaaaaaaaataaaaaaaaatatt                                                    >  1:3176297/1‑126 (MQ=255)
                                                                                ataCTTATCAACATTACAACGCTTTCAAAGTGTAGTTTTTAGGC‑T‑TGT‑‑‑TTTTTTTTTTT‑TT‑TTT‑TT‑AAAAAAAAAAGTAACATTTGTATCAAACCAAACATTAAAAAAAAAATTAAAAAAATaagttt                                                  >  1:3751080/1‑128 (MQ=255)
                                                                                  aCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑T‑TGTTT‑TTTTTTTTTTT‑TT‑TTT‑TT‑AAAAATAAAATTAAAATTTTGATCAACAAAAAAAATATAAAAAAAATTAAAAAAAAtattta                                                  >  1:1580541/1‑127 (MQ=255)
                                                                                    ttATAAACATTAAAACTTTTTCAATGTTTTTTTTTTATGT‑T‑TGTT‑‑TTTTTTTTTTT‑TT‑TTT‑GT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAAtagtttagt                                               <  1:4561526/128‑1 (MQ=255)
                                                                                     tATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑T‑TG‑‑‑‑TTTTTTTTTTT‑TT‑TTT‑TT‑AAAATTAAAATTAATATTTTTTACAAACAAAAAAATATCAATAAAATTAAAAAAAAttttttatttat                                            >  2:3868211/1‑126 (MQ=255)
                                                                                      aTCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑T‑TGT‑‑‑TTTTTTTTTTT‑TT‑TTT‑TT‑AAAAAAAAAAAAAATATTTGAAAAAACCAAAAAAAAATAAAAAAAATAAAAAAAAAaatttttattta                                            >  2:1351548/1‑122 (MQ=255)
                                                                                       tCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑T‑TGT‑‑‑TTTTTTTTTTT‑TT‑TTT‑TT‑AAAAATAAAATTAATATTTTTAAAAACAAAAAATATATAAAAAAAATTTAAAAAAATATTTTAATTTAg                                           >  1:902318/1‑128 (MQ=255)
                                                                                       tCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑T‑TG‑‑‑‑TTTTTTTTTTT‑TT‑TTT‑TT‑AAAAATAAAATTAATATTTTGATAAACCAAAAATATTTAAAAAAATTTTAAATAAAatgtttattttatt                                          >  1:3640902/1‑124 (MQ=255)
                                                                                        cAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑T‑TGT‑‑‑TTTTTTTTTTT‑TT‑TTT‑TT‑AAAAATAAAAATAATATTTGGATAAAACAAAACTATATAAAAAAAATTAAAAAAAAtattttatttttat                                          >  1:581477/1‑124 (MQ=255)
                                                                                           cATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑T‑TGTTTTTTTTTTTTTTT‑TT‑TTT‑TT‑AAAAATAAAATTAA‑ATTTTTATAAACCAAAAAAATAAAAAAAAAATAAAAAAAAAaattttttttttttt                                         >  2:4626127/1‑119 (MQ=255)
                                                                                           aaTTACAACGATTTAAAAGTGTATTTTTTAGGC‑T‑TG‑‑‑‑TTTTTTTTTTT‑TT‑TTT‑GT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCa                                      <  2:4190903/127‑1 (MQ=255)
                                                                                             ttACAACGCTTTCAAAGTGTATTTTTTAGGC‑T‑TGT‑‑‑TTTTTTTTTTT‑TT‑TTT‑TT‑AAAAAAAAAATTAAGATTTTGATCAACCAAAACTATATAAAAAAAAATAAAAAAAATAGTTTATTTGTATTTCaa                                     >  1:1006379/1‑128 (MQ=255)
                                                                                              tACAACGCTTTCAAAGTGTATTTTTTAGGC‑T‑TG‑‑‑‑TTTTTTTTTTT‑TT‑TTTAGT‑AAAAAAAAAATAAAGATTTGAATAAACCAAAAATATATAAAAAAATTTAAAAAAAATAATTtagtttagttaaaaa                                    >  1:1438345/1‑123 (MQ=255)
                                                                                                  aCGTTTTAAAAGTGTTTTTTTTAGGC‑T‑TT‑‑‑‑TTTTTTTTTTT‑TT‑TTT‑GT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGc                               <  2:4923391/128‑1 (MQ=255)
                                                                                                  aCGCTTTCAAAGTGTATTTTTTAGGC‑T‑TGT‑‑‑TTTTTTTTTTT‑TT‑TTT‑TT‑AAAAAAAAAAATTAAATTTTGATCAACAAAAAATATATAAAAAAAATTAAAAAAAATATTTTATTTTAGTTTAAAAtatt                                >  1:2956864/1‑125 (MQ=255)
                                                                                                  aCGCTTTCAAAGTGTATTTTTTAGGC‑T‑TG‑‑‑‑TTTTTTTTTTT‑TT‑TTT‑TT‑AAAAAAAAAATTAATATTTGGATAAACCAAAAATATATAAAAAAAATTAAAAAAAAAATTTTATTTTAGTTTCaaaaatga                               >  1:4283769/1‑123 (MQ=255)
                                                                                                    gattttAAATTGTATTTTTTAGGCTT‑TT‑‑‑‑TTTTTTTTTTT‑TT‑TTT‑GT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCa                              <  2:4285798/126‑1 (MQ=255)
                                                                                                       ttCAAAGTGTATTTTTTAGGC‑T‑TGT‑‑‑TTTTTTTTTTT‑TT‑TTT‑TT‑AAAAATAAAATTAAAATTTGGAAACACCCAAACTTTATCAAAAAAATATAAAAAAATAGTTTTATTTTTTTTGAAATGTGCattt                           >  2:349246/1‑126 (MQ=255)
                                                                                                       ttCAAAGTGTATTTTTTAGGC‑T‑TGT‑‑‑TTTTTTTTTTT‑TT‑TTT‑TT‑AAAAAAAAAATTAAATTTTGGATAAACAAAAACTAAAAAAAAAAAATAAAAAAAAAAAGTTTAATTAAATTTaaaaatataaata                           >  2:2936482/1‑119 (MQ=255)
                                                                                                        tCAAAGTGTATTTTTTAGGC‑T‑TGTTT‑TTTTTTTTTTT‑TT‑TTT‑TT‑AAAAAAAAATATAATATTTTGATAAACAAAAAATTTTAAAAAAAAATTAAAAAAATTTTTTTATTTATGTATAAAATATGCaaa                            >  1:2716965/1‑126 (MQ=255)
                                                                                                         cAAAGTGTATTTTTTAGGC‑T‑TGT‑‑‑TTTTTTTTTTT‑TT‑TTT‑TT‑AAAAATAAAATTAATATTTTGATCAACAAAAAATATATTAAAAAAATTAAAAAAAATATTTTATTTTAGTTTAAAAAATGAatatat                         >  1:3978639/1‑128 (MQ=255)
                                                                                                            aGTGTATTTTTTAGGC‑T‑TGTT‑‑TTTTTTTTTTT‑TT‑TTT‑GT‑AAAAATAAAATTATGATTTGGATCAACCAAAACAATTTAAAAAAAATTAAAAAAAATTATTTAGTTGAGTTTAAAAACTTAAtatttat                       >  1:4114600/1‑127 (MQ=255)
                                                                                                             gtgtATTTTTTAGGC‑T‑TGTTTTTTTTTTTTTTT‑TT‑TTT‑TT‑AAAAAAAAAATTTATATTTGGAAAAACCAAAAATATATAAAAAAAATTAAAAAAAATAATTTATTTTATTTTAAAAtaatcaaatata                        >  1:1353435/1‑117 (MQ=255)
                                                                                                                    ttttAGGC‑T‑TGTT‑‑TTTTTTTTTTT‑TT‑TTT‑TT‑AAAAATAAAAGTAAGATTTGGATAAACCAAAAGTATTTAAAAAAAATTAAAAAAAATATTTATTTTTATTTTAAAATCTGCATATATATTAAAAAgg               >  1:2544524/1‑128 (MQ=255)
                                                                                                                         ggC‑T‑TG‑‑‑‑TTTTTTTTTTT‑TT‑TTT‑TT‑AAAAATAAAATTAATATTTGGAAAAACCAAAAATAAATAAAAAAAATTAAAAAAAAAATTTTATTTTTTTTACAAAAATGAATAATTATTAAAAAGTAATTTAt        >  2:4497212/1‑128 (MQ=255)
                                                                                                                          tttttttttttttttttttttt‑tt‑ttt‑GT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGaa             <  1:4827959/117‑1 (MQ=255)
                                                                                                                             ttttttttttttttttttt‑tt‑ttt‑GT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAttt          <  1:204748/120‑1 (MQ=255)
                                                                                                                             ttgtttttttttttttttt‑tt‑ttt‑GT‑TAAAATAATATTAAGATTTGGATCAACAAAAACTATATTAAAAAAATTAAAAAAAATTGTTTAGTTTATTTTCAAATCTTCATATATAGTACAAAGGAAttt          <  1:4724828/120‑1 (MQ=255)
                                                                                                                             ttgtttttttttttttttt‑tt‑ttt‑GT‑TAAAATAAAAGTAAGATTTTGATCAAACAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAttt          <  2:6473/120‑1 (MQ=255)
                                                                                                                             tgttttttttttttttttt‑tt‑ttt‑GT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAttt          <  1:5133680/120‑1 (MQ=255)
                                                                                                                               ttttgtttttttttttt‑tt‑ttt‑GT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTAt        <  1:4985772/122‑1 (MQ=255)
                                                                                                                               gtttttttttttttttt‑tt‑ttt‑GT‑AAATATAAAAGTAAGATTTGGATCAACAAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTAt        <  2:2836838/122‑1 (MQ=255)
                                                                                                                                tttttttttttttttt‑tt‑ttt‑GT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATg       <  2:1685719/123‑1 (MQ=255)
                                                                                                                                 gtttttttttttttt‑tt‑ttt‑tt‑AAAAAAAAAATTAAGATTTTGAAAAACCAAAAAAATAAAAAAAAAATTAAAAAAAATATTTTTGTTTATTTAAAAAAATGCAAATATATTAAAAAGTAAttattaa      >  2:1805993/5‑123 (MQ=255)
                                                                                                                                  tttttttttttttt‑tt‑ttt‑GT‑AAATATAAAAGTTAGATTTTGATAAAAAAAATCTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGAt     <  2:1191230/125‑1 (MQ=255)
                                                                                                                                  tttttttttttttt‑tt‑ttt‑GT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGAt     <  2:5365297/125‑1 (MQ=255)
                                                                                                                                    tttttttttttt‑tt‑ttt‑GT‑TAAAATATAATTTATTTTTTTATGAACATAAAATATATTAAAAAAATTAAAAAAAATATTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAg   <  2:4093433/127‑1 (MQ=255)
                                                                                                                                    tttttttttttt‑tt‑ttt‑GT‑AAAAATAAAAGTAATATTTTGATCAAAAAAAAATATATAAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAg   <  1:2257650/127‑1 (MQ=255)
                                                                                                                                     ttttttttttt‑tt‑ttt‑tt‑AAAAATAAAATTAATATTTGGATCAACCAAAAAAATATAAAAAAAATTAAAAAAAATATTTTATTTGATTTTAAAATAAGAATATTTATTAAAAAAAAATTTTTtataaa  >  2:4851124/1‑126 (MQ=255)
                                                                                                                                     |                                                                                                                                   
TTAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑T‑TG‑‑‑‑TTTTTTTTTTT‑TT‑TTT‑GT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGA  >  CP016816/203769‑204023

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.