BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP016816	420,253	0	C	A	48.9%	935.1 / inf	1676	intergenic (‑536/+307)	JCVSYN2_01895/JCVSYN2_01900	30S ribosomal protein S10/tRNA‑Thr
Reads supporting (aligned to +/- strand): ref base C (244/563); new base A (656/117); total (920/756)
Fisher's exact test for biased strand distribution p-value = 0.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 1709 total aligned reads displayed.

AAAACTACTAGCACTTTTTTAAAAAATTTAAAATTAAAATAACTGAATTATTTTTCAAATTGTTAAATTATTTT‑CAAATCATTATCTATT‑AAT‑CAA‑TTTTA‑‑TGCT‑C‑G‑‑TT‑TTTTTTTTTTTTTT‑T‑ACAAAAA‑TA‑TA‑ATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTA  >  CP016816/420128‑420380

aaaaATACTATCAATTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAAATGTTAAATTATTTT‑CAAATAATTATCTATT‑AAT‑CAA‑TTTTA‑‑TTCT‑C‑G‑‑‑T‑TTTTTTTTTTTTTT‑T‑ACaaa                                                                                                                                 <  1:941506/128‑1 (MQ=255)

 aaaCTAATATCAATTTTTTAAAAAATTTTTAATTTTAAAAACTTTATTATTTTTAAAATTTTTAAATTATTTT‑TAAATCATTATATATT‑AAT‑CAA‑TTTTA‑‑TGCT‑C‑G‑‑TT‑TTTTTTTTTTTTTT‑T‑ACaaa                                                                                                                                 <  2:5527490/128‑1 (MQ=255)

   actactAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTT‑CAAATCATTATCTATT‑AAT‑CAA‑TTTTA‑‑TGCT‑C‑T‑‑TT‑TTTTTTTTTTTTTT‑T‑Taaaaaa                                                                                                                               >  2:2571648/1‑128 (MQ=255)

   actactAGCACTTTTTAAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATAATTTT‑CAAATCATTATCTATT‑AAT‑CAA‑TTATA‑‑TGAT‑C‑G‑‑TT‑TTTTTTTTTTTTTT‑a‑aaaaaaa                                                                                                                               >  2:1475620/1‑128 (MQ=255)

    atattatatattttttTAAAAATTTTTAATTTTAATAAATTAATTTTTTTTAAAATTTTTAAATTTTTTT‑TAAATAATTTTATATT‑AAT‑AAT‑TTTTT‑‑TTTT‑G‑GT‑TT‑TTTTTTTTTTTTTT‑T‑ACaaaaa                                                                                                                               <  2:3076731/118‑1 (MQ=255)

     ttatatatattttttAAAAAATTTTTTATTTTAAAAAATTTTTTATTTTTCAAATTTTTAAATTATTTT‑AAAATCATTATATATT‑AAT‑CAA‑TTTTA‑‑TTGT‑CTT‑‑TT‑TTTTTTTTTTTTTT‑T‑ACAAAAa‑t                                                                                                                             <  2:4479208/119‑1 (MQ=255)

     tactaGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTT‑CAAATCATTATCTATT‑AAT‑CAA‑TTTTA‑‑TGCT‑C‑G‑‑TT‑TTTTTTTTTTTTTT‑T‑Aaaaaaaaa                                                                                                                             >  1:3723041/1‑126 (MQ=255)

       atatatattttttTAAAAATTTTTAATTTTAATAAATTTATTTTTTTTAAAATTTTTAAATTTTTTT‑AAAATAATTATTTTTT‑AAT‑AAA‑TTTTA‑‑TTTT‑T‑GT‑TT‑TTTTTTTTTTTTTT‑T‑ACAAAAa‑ta‑t                                                                                                                          <  2:3165521/121‑1 (MQ=255)

         tttaattttttTAAAAATTTTTTATTTTTATAAATTTATTATTTTTTAAATTTTTTAATTTTTTT‑TAAATAATTATAAATT‑TAT‑AAA‑TTTTT‑‑TTCT‑T‑G‑‑TT‑TTTTTTTTTTTTTT‑T‑ACAAAAA‑TA‑TA‑at                                                                                                                      <  1:1002565/123‑1 (MQ=255)

         ttaaCTTTTATAAAAAATTTTTTATTTTAAAAACTGAATTATTTTTAAAATTTTTAAATTATTAT‑AAAATAATTATCAATT‑AAT‑AAA‑TTTTT‑‑TGCT‑CGG‑‑TT‑TTTTTTTTTTTTTT‑T‑ACAAAAA‑TA‑Ta‑a                                                                                                                       <  2:3633862/125‑1 (MQ=255)

         attaattttttAAAAAATTTTTTATTTTAATAAATTATTTTTTTTTTAAATTTTTAAATTATTTT‑AAAATAATTATATATT‑TAT‑AAATTTTTT‑‑TTTT‑T‑T‑‑TT‑TTTTTTTTTTTTTT‑T‑ACAAAAA‑TA‑Ta‑a                                                                                                                       <  2:229590/123‑1 (MQ=255)

         ataaattttttTAAAAATTTTTTATTTTAATAAATTATTTATTTTTATAATTGTTTAATTTTTTT‑AAAATAATTATATATT‑AAA‑AAA‑TTTTA‑‑TTCT‑C‑GT‑TT‑TTTTTTTTTTTTTT‑T‑ACAAAAA‑TA‑Ta‑a                                                                                                                       <  1:2448525/123‑1 (MQ=255)

         agaaCTTTTTTAAAAAATTTTTAATTTTAATAACTTAATTATTTTTAAAATTTTTAAATTATTTT‑CAAATCATTATATATT‑AAT‑AAA‑TTTTA‑‑TGCT‑C‑G‑‑TT‑TTTTTTTTTTTTTT‑T‑ACAAAAA‑TA‑TA‑at                                                                                                                      <  1:4850983/125‑1 (MQ=255)

           aatttttttAATAATTTTTAAATTTAATAAATTTAATT‑TTTTTTAAATTTTTTAATTTTTTT‑AAAAATAATATTTATTAAAT‑AAT‑TTTTT‑‑TTTT‑T‑T‑‑TT‑TTTTTTTTTTTTTT‑T‑ACAAAAA‑TA‑TA‑attt                                                                                                                    <  2:1112675/125‑1 (MQ=255)

              ttttttAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTT‑CAAATCATTATCTATT‑AAT‑CAA‑TTTTA‑‑TGCT‑C‑GT‑TT‑TTTTTTTTTTTTTT‑T‑ACAAAAA‑TA‑ta‑attaat                                                                                                                  >  2:1203877/1‑128 (MQ=255)

              ttttttAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTT‑CAAATCATTATCTATT‑AAT‑CAA‑TTTTA‑‑TGCT‑C‑G‑‑‑T‑TTTTTTTTTTTTTT‑T‑AAAAAAA‑TA‑TA‑atttattt                                                                                                                >  1:4480005/1‑128 (MQ=255)

              ttttttAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTT‑CAAATCATTATCTATT‑AAT‑CAA‑TTTTA‑‑TGCT‑C‑G‑‑‑T‑TTTTTTTTTTTTTT‑T‑AAAAAAA‑TA‑TA‑atttattt                                                                                                                >  1:1085341/1‑128 (MQ=255)

              ttttttAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTT‑CAAATCATTATCTATT‑AAT‑CAA‑TTTTA‑‑TGCT‑C‑G‑‑‑‑‑TTTTTTTTTTTTTT‑T‑ACAAAAA‑TA‑TA‑ATTTATTTg                                                                                                               >  1:3050656/1‑128 (MQ=255)

              ttttttAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTT‑CAAATCATTATCTATT‑AAT‑CAA‑TTTTA‑‑TGCT‑C‑G‑‑‑‑‑TTTTTTTTTTTTTT‑T‑AAAAAAA‑TA‑TA‑atttatttt                                                                                                               >  2:4151350/1‑127 (MQ=255)

               tttttAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTT‑CAAATCATTATCTATT‑AAT‑CAA‑TTTTA‑‑TGCT‑C‑G‑‑TTATTTTTTTATTTATA‑T‑AAAAAAA‑AA‑AA‑aattatt                                                                                                                 >  2:5323887/1‑128 (MQ=255)

                ttttAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTT‑CAAATCATTATCTATT‑AAT‑CAA‑TTTTA‑‑TGCT‑C‑GTTTT‑TTTTTTTTTTTTTT‑T‑ACAAAAA‑TA‑TA‑atttatt                                                                                                                 >  1:5041986/1‑128 (MQ=255)

                  ttAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTT‑CAAATCATTATCTATT‑AAT‑CAA‑TTTTA‑‑TGCT‑C‑GT‑TT‑TTTTTTTTTTTTTT‑T‑ACAAAAA‑TA‑AA‑atttatttta                                                                                                              >  1:4599977/1‑126 (MQ=255)

                   tAAAAAATTTTTAATTTTTATAAATTATATATTTTTTAAATTTTTATATTAATTT‑AAAATAATTATATATT‑AAA‑AAA‑TTTTA‑‑TTAT‑CTT‑‑TT‑TTTTTTTTTTTTTT‑T‑ACAAAAA‑TA‑TA‑ATTTATTTGAt                                                                                                             <  1:2031786/128‑1 (MQ=255)

                   tAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTT‑CAAATCATTATCTATT‑AAT‑CAA‑TTTTA‑‑TGCT‑C‑G‑‑TT‑TTTTTTTTTTTTTTAT‑AAAAAAA‑aa‑ta‑ataaaatttat                                                                                                             >  1:1664030/1‑119 (MQ=255)

                    aaaaaaTTTTTAATTTTAATAACTTAATTATTTTTAAAATTTTTTAATTTTTTT‑CAAATCATTTTCTATT‑AAT‑AAA‑TTTTT‑‑TGCT‑C‑GT‑TT‑TTTTTTTTTTTTTT‑T‑ACAAAAA‑TA‑TA‑ATTTATTTGAtt                                                                                                            <  2:4702270/128‑1 (MQ=255)

                     aaaaaTTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTT‑CAAATCATTATCTATT‑AAT‑CAA‑TTTTA‑‑TGCT‑C‑G‑‑TT‑TTTTTTTTTTTTTT‑T‑TAAAAAA‑TATTA‑ATTTATTttatta                                                                                                           >  2:4422323/1‑128 (MQ=255)

                        aaTTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTT‑CAAATCATTATCTATT‑AAT‑CAA‑TTTTA‑‑TGCT‑C‑GT‑TT‑TTTTTTTTTTTTTT‑T‑AAAAAAA‑TA‑TA‑ATTTTTTTTATTAAAc                                                                                                        >  2:4756451/1‑128 (MQ=255)

                        aaTTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTT‑CAAATCATTATCTATT‑AAT‑CAA‑TTTTA‑‑TGCT‑C‑G‑‑TT‑TTTTTTTTTTTTTT‑T‑TAAAAAA‑AA‑TT‑atttttttttattaaag                                                                                                       >  2:3750677/1‑119 (MQ=255)

                         tttttaatttttaataatTTAATTTTTTTTTAATTTTTTAATTTTTTTT‑AAAATAATTTATTTTT‑AAT‑‑AA‑ATTTA‑‑TTCT‑C‑T‑‑TT‑TTTTTTTTTTTTTT‑T‑ACAAAAA‑TA‑TA‑ATTTATTTGATTAAACGta                                                                                                     <  1:3540817/116‑1 (MQ=255)

                         atttttaattttaatAAATTAATTATTTTTAAAATTTTTTAATTTTTTT‑TAAATAATTATATATT‑AAT‑AAA‑TTTTATTTTAT‑T‑T‑‑TT‑TTTTTTTTTTTTTT‑T‑ACAAAAA‑TA‑TA‑ATTTATTTGATTAAAc                                                                                                        <  1:4898971/116‑1 (MQ=255)

                           ttttaattttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTT‑CAAATCATTATCTATT‑AAT‑CAA‑TTTTA‑‑TGCT‑C‑GTTTT‑TTTTTTTTTTTTTT‑T‑AAAAAAA‑TA‑TA‑ATTTATTTTATAAAActt                                                                                                      >  1:5317847/11‑126 (MQ=255)

                           ttttaattttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTT‑CAAATCATTATCTATT‑AAT‑CAA‑TTTTA‑‑TGCT‑C‑GT‑TT‑TTTTTTTTTTTTTT‑T‑AAAAAAA‑TA‑TA‑ATTTATTTTTTTAAAAGta                                                                                                     >  2:817497/11‑128 (MQ=255)

                            tttaattttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTT‑CAAATCATTATCTATT‑AAT‑CAA‑TTTTA‑‑TGCT‑C‑GT‑TT‑TTTTTTTTTTTTTT‑T‑AAAAAAATTA‑AA‑ATTTATTT‑ATTTAACatat                                                                                                    >  1:4749711/10‑128 (MQ=255)

                                tttttaataatTTAATTATTTTTTAAATTTTTTAATTTTTTT‑ATAATAATTATATATT‑AAT‑AAA‑TTTTA‑‑TTCT‑C‑T‑‑TT‑TTTTTTTTTTTTTT‑T‑ACAAAAA‑TA‑TA‑ATTTATTTGATTAAACGTATATTTa                                                                                               <  1:5517037/123‑1 (MQ=255)

                                 ttttaatAAATTAATTATTTTTAAAATTTTTATATTATTTT‑TAAATAAATATATATT‑AAT‑TAA‑TTTTA‑‑TTTT‑CTT‑‑TT‑TTTTTTTTTTTTTT‑T‑ACAAAAA‑TA‑TA‑ATTTATTTGATTAAACGTATATTTa                                                                                               <  1:4425886/124‑1 (MQ=255)

                                    ttatAACTGAATTATTTTTCAAATTGTTAAATTATTTT‑CAAATCATTATCTATT‑AAT‑CAA‑TTTTA‑‑TGCT‑C‑GT‑TT‑TTTTTTTTTTTTTT‑T‑AAAAAAA‑TA‑TA‑ATTTTTTTTATTAAACTTATtttttttt                                                                                            >  2:5051405/3‑124 (MQ=255)

                                      tataattatttattTTTTAAATTTTTTTATTTTTTT‑AAAATTATTATATATT‑AAT‑TAA‑TTTTT‑‑TTTC‑T‑T‑‑TT‑TTTTTTTTTTTTTT‑T‑ACAAAAA‑TA‑TA‑ATTTATTTGATTAAACGTATATTTATGTTta                                                                                         <  1:4668197/119‑1 (MQ=255)

                                      ataaatttatttttTTTTAAATTTTTAAATTATTTT‑AAAATAATTATATATT‑AAT‑AAA‑TTTTA‑‑TTTT‑T‑G‑‑TT‑TTTTTTTTTTTTTT‑T‑ACAAAAA‑TA‑TA‑ATTTATTTGATTAAACGTATATTTATGTTta                                                                                         <  2:4321060/120‑1 (MQ=255)

                                      ataaatttattattTTTTAAATTTTTTAAATTTTTT‑AAAATAATTTAATATT‑AAT‑AAA‑TTTTA‑‑TTCT‑G‑GTTTT‑TTTTTTTTTTTTTT‑T‑ACAAAAA‑TA‑TA‑ATTTATTTGATTAAACGTATATTTATGtt                                                                                           <  1:4329169/120‑1 (MQ=255)

                                         tattatttttttttAAAAAAGTTAAATTATTTT‑GAAAACTATATATATA‑AAT‑AAA‑TTTTA‑‑TGCT‑‑‑T‑‑TT‑TTTTTTTTTTTTTT‑T‑ACAAAAA‑TA‑TA‑ATTTATTTGATTAAACGTATATTTATGTTtaataa                                                                                     <  1:1198144/119‑1 (MQ=255)

                                          cTGAATTATTTTTCAAATTGTTAAATTATTTT‑CAAATCATTATCTATT‑AAT‑CAA‑TTTTA‑‑TGCT‑C‑GT‑TT‑TTTTTTTTTTTTTT‑T‑ACAAAAA‑TA‑TA‑ATTTATTTTATTAAAAGTATATTTATTTTtaata                                                                                      >  1:2550384/1‑128 (MQ=255)

                                           tttattattTTTAAAATTTTTAAATTATTTT‑TAAATTATTATTTTTT‑TAT‑TAT‑TTTTA‑‑TTATAT‑T‑‑TT‑TTTTTTTTTTTTTT‑T‑ACAAAAA‑TA‑TA‑ATTTTTTTGATTAAACGTATATTTATGTTtaataa                                                                                     <  1:4264973/125‑1 (MQ=255)

                                           tGAATTATTTTTCAAATTGTTAAATTATTTT‑CAAATCATTATCTATT‑AAT‑CAA‑TTTTA‑‑TGCT‑C‑GT‑TT‑TTTTTTTTTTTTTT‑T‑ACAAAAA‑TA‑TA‑ATTTATTTAATTAAACGTATATTTATTTTtaaaaa                                                                                     >  2:4206233/1‑128 (MQ=255)

                                            ttattattTTTATAATTTTTAAATTTTTTT‑TAAATTATTTTTTATT‑AAT‑AAA‑TTTTT‑‑TTCT‑T‑G‑‑TT‑TTTTTTTTTTTTTT‑T‑ACAAAAA‑TA‑TA‑ATTTATTTGATTAAACGTATATTTATGTTTAATaaaa                                                                                   <  2:341596/126‑1 (MQ=255)

                                               tttttttttAAATTTTTAAATTTTTTTAAAAATATTTTTTTATT‑AAT‑AAT‑TTTTT‑‑TTTT‑T‑T‑‑TT‑TTTTTTTTTTTTTT‑T‑ACAAAAA‑TA‑TA‑ATTTATTTGATTAAACATAAATATACGTTTAATcaaata                                                                                 <  2:4543902/125‑3 (MQ=12)

                                                tattTTTCAAATTGTTAAATTATTTT‑CAAATCATTATCTATT‑AAT‑CAA‑TTTTA‑‑TGCT‑C‑GTTTT‑TTTTTTTTTTTTTT‑T‑AAAAAAA‑TA‑TA‑ATTTATTTTATTAAAATTATATTTTTTTTTAATAAAAAt                                                                                 >  1:5112980/1‑128 (MQ=255)

                                                tattTTTCAAATTGTTAAATTATTTT‑CAAATCATTATCTATT‑AAT‑CAA‑TTTTA‑‑TGCT‑C‑GT‑TT‑TTTTTTTTTTTTTT‑T‑AAAAAAA‑TA‑AA‑ATTAATTTTATTAAACTTATTTTTATTTTTAATAAAAAtt                                                                                >  1:2766251/1‑127 (MQ=255)

                                                 attTTTCAAATTGTTAAATTATTTT‑CAAATCATTATCTATT‑AAT‑CAA‑TTTTA‑‑TGCT‑C‑GTTTT‑TTTTTTTTTTTTTT‑T‑AAAAAAA‑TA‑TA‑ATTTTTTTTTTTAAAATTATTTTTATTTTTAATAAAAATg                                                                                >  1:5236864/1‑128 (MQ=255)

                                                 attTTTCAAATTGTTAAATTATTTT‑CAAATCATTATCTATT‑AAT‑CAA‑TTTTA‑‑TGCT‑C‑G‑‑TT‑TTTTTTTTTTTTTT‑T‑AAAAAAA‑TA‑TA‑ATTTATTTTATTAAACTTATATTTATTTTTAATAAAAATgta                                                                              >  2:4939657/1‑126 (MQ=255)

                                                  tttttCAAATTGTTAAATTATTTT‑CAAATCATTATCTATT‑AAT‑CAA‑TTTTA‑‑TGCT‑C‑G‑‑TT‑TTTTTTTTTTTTTT‑T‑TAAAAAA‑AA‑TATATTTAATTTAATAAAAATATAATTATTTTTAATaaaaaataa                                                                              >  2:3948811/1‑124 (MQ=255)

                                                     ttCAAATTTTTAAATTTTTTT‑AAAATAATTTTATAAT‑AATAAAA‑TTTTT‑‑TCTT‑T‑T‑‑TT‑TTTTTTTTTTTTTT‑T‑ACAAAAA‑TA‑TA‑ATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGaaaa                                                                           <  2:632865/128‑1 (MQ=255)

                                                       cAAATTGTTAATTTATTTT‑CAAATCATTATCTATT‑AAT‑CAA‑TTTTA‑‑TGCT‑C‑GTTTT‑TTTTTTTTTTTTTT‑T‑AAAAAAA‑TA‑AT‑ATTTATTTGATTAAACGTATATTTATTTTTAATAAAAATGGaaaaa                                                                          >  2:2929254/1‑127 (MQ=255)

                                                       cAAATTGTTAAATTATTTT‑CAAATCATTATCTATT‑AAT‑CAA‑TTTTA‑‑TGCT‑C‑GTTTT‑TTTTTTTTTTTTTT‑T‑ACAAAAA‑AA‑TA‑ATTTATGTTATTAAACTTTTTTTTATGTTTAATAAAAATGGAaaag                                                                          >  2:1269786/1‑128 (MQ=255)

                                                         aaTTGTTAAATTATTTT‑CAAATCATTATCTATT‑AAT‑CAA‑TTTTA‑‑TGCT‑C‑GTTTT‑TTTTTTTTTTTTTT‑T‑AAAAAAA‑TA‑TA‑ATTTTTTTTATAAAACTTATATTTATTTTTAATAAAAATTTAaaaaaa                                                                        >  1:1487778/1‑128 (MQ=255)

                                                          aTTGTTAAATTATTTT‑CAAATCATTATCTATT‑AAT‑CAA‑TTTTA‑‑TGCT‑C‑GTTTT‑TTTTTTTTTTTTTT‑T‑AAAAAAT‑TT‑TA‑ATTTTTTTTATTAAAATTATTTTTTTTTATAAAAAAATTGTAaaataaa                                                                       >  2:5226602/1‑128 (MQ=255)

                                                             gTTAAATTATTTT‑CAAATCATTATCTATT‑AAT‑CAA‑TTTTA‑‑TGCT‑C‑GTTTT‑TTTTTTTTTTTTTT‑T‑AAAAAAA‑TA‑TA‑TTTTATTTTATTAAACTTATTTTTATGTTTAATAAAAATGGaaaaaaaattt                                                                    >  1:664591/1‑125 (MQ=255)

                                                                aaaTTATTTT‑CAAATCATTATCTATT‑AAT‑CAA‑TTTTA‑‑TGCT‑C‑G‑‑TT‑TTTTTTTTTTTTTT‑TAAAAAAAA‑TA‑TA‑ATTTATTTTATTAAAATTTATTTTATTTTTAATAAAATTGAAAAAAaaattaaatt                                                                >  2:5142243/1‑128 (MQ=255)

                                                                 aaTTATTTT‑CAAATCATTATCTATT‑AAT‑CAA‑TTTTA‑‑TGCT‑C‑G‑‑TT‑TTTTTTTTTTTTTT‑T‑ACAAAAA‑AA‑AA‑ATTTATTTTATTAAACTTATATTTATTTTTAATAAAAATTGAAAAAAAaattaatttt                                                              >  2:4263198/1‑126 (MQ=255)

                                                                   ttattTT‑CAAATCATTATCTATT‑AAT‑CAA‑TTTTA‑‑TGCT‑C‑GT‑TT‑TTTTTTTTTTTTTT‑T‑AAAAAAA‑TA‑TA‑TTTTTTTTTTTTAAACGTTTATTTTTTTTTAATAAAAATGGAAAATAAATTTAATTGta                                                             >  2:1684900/1‑127 (MQ=255)

                                                                   ttattTT‑CAAATCATTATCTATT‑AAT‑CAA‑TTTTA‑‑TGCT‑C‑G‑‑‑‑‑‑TTTTTTTTTTTTT‑T‑ACAAAAA‑TA‑TA‑ATTTATTTTATTAAACGTATATTTATTTTTAATAAAAATGGAAAATAAATTGAATTGTCataa                                                         >  1:4117257/1‑128 (MQ=255)

                                                                      tttt‑CAAATCATTATCTATT‑AAT‑CAA‑TTTTA‑‑TGCT‑C‑GT‑TT‑TTTTTTTTTTTTTT‑T‑AAAAAAA‑TA‑TA‑ATTTATTTTATTAAACTAATATTTTTGTTTAATAAAAATTTAAAAAAAAGTTAATTTTAata                                                          >  1:1572230/1‑128 (MQ=255)

                                                                      tttt‑CAAATCATTATCTATT‑AAT‑CAA‑TTTTA‑‑TGCT‑C‑GT‑TT‑TTTTTTTTTTTTTT‑T‑AAAAAAA‑TA‑TA‑ATTTATTTTATTAAAAATATATTTATTTTTAATAAAAATGTAAAATAAATTGAATTTTAata                                                          >  1:2673018/1‑128 (MQ=255)

                                                                            aaaTCATTATCTATT‑AAT‑CAA‑TTTTA‑‑TGCT‑C‑G‑‑‑‑‑‑TTTTTTTTTTTTT‑T‑ACAAAAA‑TA‑TA‑ATTTATTTGATTAAACGTATATTTATTTTTAATAAAAATGTAAAAGAAAGTGAATTGTAATAAtaatttaa                                                 >  1:1391198/1‑128 (MQ=255)

                                                                             aaTCATTATCTATT‑AAT‑CAA‑TTTTA‑‑TGCT‑C‑GT‑TT‑TTTTTTTTTTTTTT‑T‑AAAAAAA‑TA‑TA‑ATTTATTTGATTAAAAGTATATTTTTGTTTAATAAAAATGTAAAATAAAGTAAATTTTAATAAtaatt                                                    >  1:4200994/1‑128 (MQ=255)

                                                                             aaTCATTATCTATT‑AAT‑CAA‑TTTTA‑‑TGCT‑C‑G‑‑TT‑TTTTTTTTTTTTTT‑A‑AAAAAAA‑TA‑AA‑ATTTATTTTATTAAAATTATATTTTTTTTAAATAAAAATTTAAAAAAAATTTATTTTTAATAAaaatta                                                   >  1:1263476/1‑127 (MQ=255)

                                                                              aTCATTATCTATT‑AAT‑CAA‑TTTTA‑‑TGCT‑C‑G‑‑TT‑TTTTTTTTTTTTTT‑TAACAAAAA‑TT‑TA‑ATTTATTTGATTAAACGTATATTTTTGTTTAATAAAAATGGAAAAGAAATTTAATTGTAATAAatattt                                                   >  1:293009/1‑128 (MQ=255)

                                                                                 tttatttatT‑AAT‑TAA‑TTTTT‑‑TTAT‑T‑TT‑TT‑TTTTTTTTTTTTTT‑T‑ACAAAAA‑TA‑TA‑ATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAAtaatttagt                                                <  1:1326297/127‑3 (MQ=255)

                                                                                 aTTATCTATT‑AAT‑CAA‑TTTTA‑‑TGCT‑C‑G‑‑TT‑TTTTTTTTTTTTTT‑TAAAAAAAA‑AA‑TA‑TTTAATTTTTTTAAACGTATATTTATTTTTAATAAAAAAGTAAAAAAAATTGTATT‑TTATAAtaaatttata                                               >  1:3830452/1‑127 (MQ=255)

                                                                                     tttttt‑aat‑taa‑TTTTT‑‑TTTT‑T‑T‑‑TT‑TTTTTTTTTTTTTT‑T‑ACAAAAA‑TA‑TA‑ATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAat                                           <  1:4953217/124‑1 (MQ=255)

                                                                                     tCTATT‑AAT‑CAA‑TTTTA‑‑TGCT‑C‑GT‑TT‑TTTTTTTTTTTTTT‑T‑ACAAAAA‑TA‑TA‑ATTTTTTTGATAAAAAGTATATTTATTTTTAAAAAAAATTTAAAAAAAATTTAATTTAAATAATAAttaaattaaa                                            >  2:4620522/1‑128 (MQ=255)

                                                                                      cTATT‑AAT‑CAA‑TTTTA‑‑TGCT‑C‑G‑‑‑‑‑‑‑TTTTTTTTTTTT‑T‑ACAAAAA‑TA‑TA‑ATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAAtatata                                      <  1:596655/128‑1 (MQ=255)

                                                                                       tATT‑AAT‑CAA‑TTTTA‑‑TGCT‑C‑GT‑TT‑TTTTTTTTTTTTTT‑T‑ACAAAAA‑TT‑TA‑ATTTTTTTGATTAAACGAATATTTATTTTTAATAAAAATGGAAAAGAAAGTGAATTGAGCTAAtaatttatataatta                                          >  2:2748394/1‑120 (MQ=255)

                                                                                          t‑AAT‑CAA‑TTTTA‑‑TGCT‑C‑GT‑TT‑TTTTTTTTTTTTTT‑T‑TAAAAAA‑TA‑TT‑ATTTATTTTATTAAAAGTTTATTTATTTTTAATAAAAATTTAAAATAAATTGAATTTTAAAAAATATTTAATTAAatatat                                       >  1:721038/1‑128 (MQ=255)

                                                                                          t‑AAT‑CAA‑TTTTA‑‑TGCT‑C‑GT‑TT‑TTTTTTTTTTTTTT‑T‑AAAAAAA‑AA‑AA‑ATTTTTTTTAATAAAAGTTATTTTTTTTTTTATAAAAATTTTAAATAAATTTAATTTTAAAAAATATTTATTTAAa‑atata                                      >  1:2166521/1‑128 (MQ=255)

                                                                                            aaT‑CAA‑TTTTA‑‑TGCT‑C‑G‑‑‑T‑TTTTTTTTTTTTTT‑T‑AAAAAAA‑TA‑TA‑ATTTATTTTATTAAACTTATATTTATTTTTAATAAAAATGTAAAATAAATTTAATTTTCAAAATAATTAAATTAAATATATaaa                                    >  1:2267630/1‑127 (MQ=255)

                                                                                                  a‑TTTTA‑‑TGCT‑C‑GTTTT‑TTTTTTTTTTTTTT‑T‑AAAAAAA‑TA‑TA‑ATTTATTTTATTAAACTTATTTTTATTTTTATAAAAAATGAAAAAAAAATTTAATTGAAAAAATAATTTAATTAATTAAAAAACaa                                  >  1:2851838/1‑128 (MQ=255)

                                                                                                    ttttA‑‑TGCT‑C‑GT‑TT‑TTTTTTTTTTTTTT‑T‑ACAAAAA‑TA‑TA‑ATTTATTTTATTAAACGTATATTTTTTTTTAATAAAAATTTAAAAGAAAGTGAATTTTCATAATAATTTAATTAAAATTATAACAAtt                                >  2:4859592/1‑127 (MQ=255)

                                                                                                      ttA‑‑TGCT‑C‑GTTTT‑TTTTTTTTTTTTTT‑T‑AAAAAAA‑TA‑TA‑ATTTATTTTATTAAACTTATTTTTTTTTTTAATAAAAATTTAAAAAAAATTGAATTTTAATAATAATTTAATTAAATATAAAAAAAtta                               >  1:4524613/1‑126 (MQ=255)

                                                                                                       tA‑‑TGCT‑C‑G‑‑TT‑TTTTTTTTTTTTTT‑T‑ACAAAAA‑TT‑TA‑ATTTTTTTTATTAAACGTTTATTTTTTTTTAATAAAATTTTAAAATAAATTTAATTTTAATAATATTTTAATTTAATATATAACAATTTaat                            >  1:3985963/1‑127 (MQ=255)

                                                                                                        a‑‑TGCT‑C‑GT‑TT‑TTTTTTTTTTTTTT‑T‑ACAAAAA‑TA‑TA‑ATTTATTTTATTAAACTTATATTTATTTTTAATAAAAATTTAAAATAAATTTAATTTTAATAATAATTTAATTAAATATATAACAATTTAAg                            >  1:1933956/1‑128 (MQ=255)

                                                                                                        a‑‑TGCT‑C‑GT‑TT‑TTTTTTTTTTTTTT‑T‑AAAAAAA‑TA‑TA‑ATTTATTTGATTAAACGTATATTTATGTTTAATAAAATTGTAAAATAAATTGAATTTAAATAATAATTTAATTAAATTTATAACAATTTaat                            >  1:3263077/1‑127 (MQ=255)

                                                                                                           tttttttttttt‑tttttttttttttt‑t‑ACAAAAA‑TA‑TA‑ATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTa                              <  1:5401854/118‑1 (MQ=255)

                                                                                                            ttttttttttt‑tttttttttttttt‑t‑AAAAAAA‑TA‑TA‑ATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTaa                             <  2:1813670/119‑1 (MQ=255)

                                                                                                                ttttttt‑tttttttttttttt‑t‑ATATATA‑TA‑TA‑TTTTATTTGATTAAAAGTATTTTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGttt                         <  2:2454815/123‑1 (MQ=255)

                                                                                                                 tttttt‑tttttttttttttt‑t‑ACAAAAA‑TA‑TA‑ATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGtttt                        <  2:2833210/124‑1 (MQ=255)

                                                                                                                 tcgttt‑tttttttttttttt‑t‑ACAAAAA‑TA‑AA‑ATTTATTTGATTAAACGTATATTTATTTTTAATAAAAATTTAAAAGAAATTTAATTGTAAAAATAATTTAATTAAATATATAAAAATTTAATtttt                        >  1:840012/5‑128 (MQ=255)

                                                                                                                  ttttt‑tttttttttttttt‑t‑ATATAAA‑TA‑TA‑ATTTATTTGATTAAAAGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTa                       <  1:3161282/125‑1 (MQ=255)

                                                                                                                  ttttt‑tttttttttttttt‑t‑ATAAATA‑TA‑TA‑ATTTATTTGATTAAAAGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTa                       <  2:1938730/125‑1 (MQ=255)

                                                                                                                  ttttt‑tttttttttttttt‑t‑AAAAATA‑TA‑TA‑TTTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTa                       <  2:1566223/125‑1 (MQ=255)

                                                                                                                  gtttt‑tttttttttttttt‑t‑AAAAAAA‑TA‑TA‑ATTTATTTGATTAAAAGTATATTTTTGTTTATTAAAAATGTAAAAAAAATATAATTTTAATAATAATTTAATTTAATTTATAAAATTTTAATTTTTa                       >  1:1899066/4‑128 (MQ=255)

                                                                                                                  atttt‑tttttttttttttt‑t‑ACAAAAA‑TA‑TA‑ATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTa                       <  1:518160/125‑1 (MQ=255)

                                                                                                                     tt‑tttttttttttttt‑t‑AATATAT‑TA‑TA‑ATTTTTTTGTTTAAAATTATATTTATGTTTAATAATAATTGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTaaaa                    <  2:3534662/128‑1 (MQ=255)

                                                                                                                         ttttttttttttt‑t‑ACAAAAA‑TA‑TT‑ATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAactt                 <  2:1370231/128‑1 (MQ=255)

                                                                                                                             ttttttttt‑t‑ACAAAAA‑TA‑TA‑ATTTATTTGATTAAACGTATATTTATTTTTAATAAAAATGGAAAAGAAATTTAATTTTCATAATAATTTAATTAAATATATAAAAATTTAATTTTTAAAaattaatt             >  1:342133/1‑128 (MQ=255)

                                                                                                                              tttttttt‑t‑ACATAAA‑TA‑TA‑ATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACttt            <  2:5437194/128‑1 (MQ=255)

                                                                                                                               ttttttt‑t‑ACAAAAA‑TA‑AA‑TTTTATTTTATTAAACTTATATTTTTTTTTAAAAAAAATGTAAAAGAAATTTATTTGTAATAATAATTTAATTAAATATTTAAAAATTTAATTTTAAAAAATTAAtttt           >  1:3643946/1‑128 (MQ=255)

                                                                                                                                 ttttt‑t‑ATATATA‑TT‑TA‑ATTTATTTGATTAAAAGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTAATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACtttttt         <  2:2077821/128‑1 (MQ=255)

                                                                                                                                  tttt‑t‑ACAAAAA‑TA‑TA‑ATTTATTTTATTAAACGTATATTTATGTTTAATAAAAATGTAAAATAAATTTAATTGTCATAATAATTTAATTAAATATATAACAATGAAATTTTTAAAAATTAAttttttt        >  1:1798854/1‑127 (MQ=255)

                                                                                                                                    tt‑t‑ACAAAAA‑TA‑TA‑ATTTATTTGATTAAACGTATTTTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTAAATTAAATATATAACAATGTAAGTTTTAAAactt                 >  1:4157019/1‑117 (MQ=255)

                                                                                                                                          cAAAAA‑TA‑TA‑ATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTttta  <  2:681624/128‑1 (MQ=255)

AAAACTACTAGCACTTTTTTAAAAAATTTAAAATTAAAATAACTGAATTATTTTTCAAATTGTTAAATTATTTT‑CAAATCATTATCTATT‑AAT‑CAA‑TTTTA‑‑TGCT‑C‑G‑‑TT‑TTTTTTTTTTTTTT‑T‑ACAAAAA‑TA‑TA‑ATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTA  >  CP016816/420128‑420380

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`