Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP01681634,9451.A40.9% 830.7 / inf 2071intergenic (+49/+117)JCVSYN2_00105/JCVSYN2_00110ABC transporter permease/cell division protein FtsH
Reads supporting (aligned to +/- strand):  ref base . (463/758);  new base A (788/58);  total (1251/820)
Fisher's exact test for biased strand distribution p-value = 0.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.99e-23

Only 100 of 2350 total aligned reads displayed.

CTTTACTTCTTTATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTG‑TTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑G‑‑‑AA‑A‑AAAAAA‑AAAAAAT‑AAT‑ATAA‑‑TTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTATATTATTATTTGTCTT  >  CP016816/34818‑35072
                                                                                                                                      |                                                                                                                                        
cTTTACTTCTTTATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTG‑TTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑g                                                                                                                                           >  2:4719055/1‑128 (MQ=255)
       tcttTATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTG‑TTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑G‑‑‑aa‑a‑aaaa                                                                                                                               >  1:3202720/1‑128 (MQ=255)
       tcttTATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTG‑TTTGGTTTATTTATTT‑A‑CTA‑TT‑‑G‑‑‑aa‑a‑aaaa                                                                                                                               >  1:418808/1‑128 (MQ=255)
            aTGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTG‑TTTGGTTTTTTTATTT‑A‑CAA‑TT‑‑G‑‑‑aa‑a‑aaaaaa‑aaa                                                                                                                         >  2:3605108/1‑128 (MQ=255)
              taGTTTAAACAAAAATATTAATAAATGCTGAACCAAGTAAAATGCTAATTTATTTTTATTAATAATAAAATATAAAACCAAATACATTGTG‑TTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑T‑‑‑aa‑a‑aaaaaa‑aaaaa                                                                                                                       <  1:4761810/127‑1 (MQ=255)
               aGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTG‑ATTGGTTTTTTTATTT‑A‑CTA‑TT‑‑G‑‑‑aa‑a‑aaaaaa‑aaaaaa                                                                                                                      >  2:5286583/1‑128 (MQ=255)
                    caacaaAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTG‑TATGGTTTTTTTATTT‑A‑CTA‑TT‑‑A‑‑‑aa‑a‑aaaaaa‑aaaaaaa‑aaaa                                                                                                                >  1:1888579/1‑126 (MQ=255)
                       caaAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTG‑TTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑G‑‑‑AA‑A‑AAAAAA‑AAAAAaa‑aaa‑attt                                                                                                            >  1:614672/1‑126 (MQ=255)
                        aaaaaGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTTAATTTTATGAATAATAAAATATTAAACCAAATACATTTTG‑TTTTGTTATTTTATTT‑A‑ATA‑TT‑‑GA‑‑AA‑A‑AAAAAA‑AAAAAat‑aat‑ataa                                                                                                            >  1:796535/1‑128 (MQ=255)
                           aaGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTG‑TTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑GA‑‑AA‑A‑AAAAAA‑AAAAAAT‑AAT‑ATAA‑‑ttt                                                                                                       >  1:4142153/1‑128 (MQ=255)
                            agagTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTG‑TTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑GA‑‑AA‑A‑AAAAAA‑AAAAAAT‑AAT‑ATAA‑‑TTTg                                                                                                      >  2:4424107/1‑128 (MQ=255)
                               gTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTG‑TTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑G‑‑‑AACA‑AAAAAA‑AAAAAat‑aat‑ataa‑‑tataaaa                                                                                                   >  2:2418148/1‑122 (MQ=255)
                                tAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTG‑TTTGGTTTTTTTATTT‑A‑CTATTT‑‑A‑‑‑AA‑A‑AAAAAA‑AAAAAAA‑AAT‑ATAA‑‑ttaaaata                                                                                                  >  1:247327/1‑122 (MQ=255)
                                  aGAAATGCTGCACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTG‑TTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑GA‑‑AA‑A‑AAAAAA‑AAAAAAA‑AAT‑ATAA‑‑TTTGCATACt                                                                                                >  1:2925309/1‑128 (MQ=255)
                                   gAAATTCTTAACAAATTACAATGCTAATTGATTTTGATTAAAAATAAAATATTAAACAAAATAAATTGGT‑TTTGGTTTTTTTATTT‑A‑ATATTT‑‑A‑‑‑AA‑A‑AAAAAA‑AAAAAAT‑AAT‑ATAA‑‑TTTGCATACta                                                                                               <  2:409265/128‑1 (MQ=255)
                                   gAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTG‑TTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑GA‑‑AA‑A‑AAAAAA‑AAAAAAA‑AAT‑ATAA‑‑ttttaataatt                                                                                               >  1:3448215/1‑120 (MQ=255)
                                     attcgttaaCCAATTTAAATGCTAAGTTAAGTTTATTAATAATAAAATTATAAACAAAATACTTTTTT‑TTTGGTTTTTTTTTTT‑A‑TTATTT‑‑A‑‑‑AA‑A‑AAAAAA‑AAAAAAT‑AAT‑ATAA‑‑TTTGCATACtata                                                                                             <  2:614037/121‑1 (MQ=255)
                                     aattctttaCCAATTACAATTTTAATGTAAGTTTTTTAAAAATAAAATATTAAAACAAATAAATTGTG‑TTTGGTTTTTTTATTA‑A‑CTATTT‑‑A‑‑‑AA‑A‑AAAAAA‑AAAAAAT‑AAT‑ATAA‑‑TTTGCATACtata                                                                                             <  1:5072144/120‑1 (MQ=255)
                                     aaTGCTTAACAAAGTACAATGCTAAGTGAATTTTATTAATAAAAAAATATTAAACCAAATAAATTGTG‑TTTGTTTTTTTTATTT‑A‑ATATTT‑‑A‑‑‑AA‑A‑AAAAAA‑AAAAAAT‑AAT‑ATAA‑‑TTTGCATACtata                                                                                             <  1:379083/128‑1 (MQ=255)
                                     aaTGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTG‑TTTGGTTTTTTTTTTT‑A‑CTA‑TT‑‑G‑‑‑AA‑A‑AAAAAA‑AAAAAAA‑AAT‑ATAA‑‑TTAGAATACTaaaa                                                                                            >  2:504992/1‑128 (MQ=255)
                                      aTGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTG‑TTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑G‑‑‑AA‑A‑AAAAAA‑AAAAAATAAAT‑ATAA‑‑TTTGCATAATATaa                                                                                            >  1:4902563/1‑128 (MQ=255)
                                      aTGCTGAACCAAGTACAATGCTAAGTGAAGTGGATGAATAATAAAAGATTAAACCAAATACATTGTG‑TTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑GA‑‑AA‑A‑AAAAAA‑AAAAAAA‑AAT‑ATAA‑‑TTTGCATACTaaaa                                                                                            >  2:2948084/1‑128 (MQ=255)
                                         cttaaCCAATTAAAATTCTAAGTGAATTTGATTAATAAAAAAATATTAAACCAAATACATTTTG‑TTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑T‑‑‑AA‑A‑AAAAAA‑AAAAAAT‑AAT‑ATAA‑‑TTTGCATACTATaaaaaa                                                                                        <  1:2770160/125‑1 (MQ=255)
                                         cTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTG‑TTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑GA‑‑AA‑A‑AAAAAA‑AAAAAAT‑AAT‑ATAA‑‑TTTGCATAATATaaaaa                                                                                         >  1:5232867/1‑128 (MQ=255)
                                            aaCCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTG‑TTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑G‑‑‑AA‑A‑AAAAAA‑AAAAAAT‑AAT‑ATAA‑‑TTTGCATACTATAAAAAAttt                                                                                     >  1:1707509/1‑127 (MQ=255)
                                             aCCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTG‑TTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑GAA‑AA‑A‑AAAAAA‑AAAAAAT‑AAA‑ATAA‑‑TTTTCATAAATTAAAAAAtt                                                                                      >  1:714890/1‑128 (MQ=255)
                                               cAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTG‑TTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑GA‑‑AA‑A‑AAAAAA‑AAAAAAT‑AAT‑ATAA‑‑TTTTCATAATAAAAAAAATtttt                                                                                   >  1:1626628/1‑128 (MQ=255)
                                                aaGTACAATGCTAAGTGATGTTTTTTAATAATAAAAGATTAAACAAAAAACATTGTG‑TTTGGTTTTTTTATTT‑A‑ATA‑TT‑‑‑‑‑‑TA‑A‑AAAAAA‑AAAAAAT‑AAT‑ATAA‑‑TTTGCATACTATAAAAAATTGttttt                                                                                <  1:3110555/128‑1 (MQ=255)
                                                aaGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTG‑TTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑GA‑‑AA‑A‑AAAAAA‑AAAAAAT‑AAT‑ATAA‑‑TTTGCATACTATAAAAAATTGttt                                                                                  >  1:4462247/1‑128 (MQ=255)
                                                aaGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTG‑TTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑GA‑‑AA‑A‑AAAAAA‑AAAAAAA‑AAA‑ATAA‑‑TTTAAAAACTATAAAAAAtatatt                                                                                  >  1:2160258/1‑123 (MQ=255)
                                                  gTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTG‑TTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑GA‑‑AA‑A‑AAAAAA‑AAAAAAT‑AAT‑AAAA‑‑TTTAAATAAAAAAAAAAAtttttttt                                                                                >  2:5192742/1‑128 (MQ=255)
                                                  gTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTG‑TTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑GA‑‑AA‑A‑AAAAAA‑AAAAAAA‑AAT‑ATAA‑‑TTTGAAAACTATAAAAAAATGtatta                                                                                >  2:3391780/1‑127 (MQ=255)
                                                  gTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTG‑TTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑G‑‑‑‑A‑A‑AAAAAA‑AAAAAAT‑AAT‑ATAA‑‑TTTGCATAATATAAAAAAttttttttaa                                                                              >  2:1085669/1‑126 (MQ=255)
                                                   taaaaTGTTAAGTTTATTTTATTAAAAATAAAATATTAAAACAAATAAATTGTG‑TTTGTTTTTTTTATTT‑A‑ATT‑TTTAA‑‑‑AA‑A‑AAAAAA‑AAAAAAT‑AAT‑ATAA‑‑TTTGCATACTATAAAAAATTGttttt                                                                                <  2:4541557/125‑1 (MQ=255)
                                                      aaTGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTG‑TTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑GAA‑AA‑A‑AAAAAA‑AAAAAAT‑AAA‑AAAA‑‑TATAAATAATATAAAAAATTGTTTTTCaa                                                                             >  1:4265203/1‑128 (MQ=255)
                                                       aTGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTG‑TTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑GA‑‑AA‑A‑AAAAAA‑AAAAAAA‑AAT‑AAAA‑‑TTTAAAAAAAAAAAAAAATTTTTTTTaaaaa                                                                           >  1:2642862/1‑127 (MQ=255)
                                                       aTGCTAAGTCAATTTGATTAATAATAAAATATTAAACCAAATAAATTGTG‑TTTGGTTTTTTTTTTT‑A‑ATATTT‑‑A‑‑‑AA‑A‑AAAAAA‑AAAAAAT‑AAT‑ATAA‑‑TTTGCATACTATAAAAAATTGTTTTTCAAAt                                                                           <  1:2996952/128‑1 (MQ=255)
                                                        tGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTG‑TTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑G‑‑‑AA‑A‑AAAAAA‑AAAAAAA‑AAT‑ATAA‑‑TTTGAATAATATAAAAAAATTTTTTTAAAATaa                                                                         >  1:460760/1‑128 (MQ=255)
                                                          ctttgTGAAGTTGTTTAATAATATATTATTAAAATAATTAAATTTTG‑TTTTGTTTTTTTATTTAA‑TTT‑TT‑‑A‑‑‑AA‑A‑AAAAAA‑AAAAAAT‑AAT‑ATAA‑‑TTTGCATACTATAAAAAATTGTTTTTCAAATAAg                                                                        <  2:418808/124‑1 (MQ=255)
                                                          cTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTG‑TTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑GA‑‑AA‑A‑AAAAAA‑AAAAAAT‑AAT‑ATAA‑‑TTTGAATAATATAAAAAATTTTTTTTAAATTaat                                                                        >  2:4855906/1‑127 (MQ=255)
                                                               ttttttttattaataatAAAATTTTAAAAAAATTATTTTTTT‑TTTGTTTTTTTTATTT‑ATTTT‑TT‑‑A‑‑‑AA‑A‑AAAAAA‑AAAAAAT‑AAT‑ATAA‑‑TTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTc                                                                   <  2:2503924/117‑1 (MQ=255)
                                                               tGAATTTGATTAATAATAAAAGAATAAACAAAAAACATTGTG‑TTTGTTTTTTTTATTT‑A‑TAATTT‑‑A‑‑‑AA‑A‑AAAAAA‑AAAAAAT‑AAT‑ATAA‑‑TTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTc                                                                   <  1:1817196/128‑1 (MQ=255)
                                                                   gTTGATGAATAATAAAAGATTAAACCAAATACATTGTG‑TTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑GA‑‑AA‑A‑AAAAAA‑AAAAAAA‑AAT‑ATAA‑‑TTTCCATACTAAAAAAAATTTTTTTACAAATAAGTACTCAgaa                                                               >  2:4970663/1‑126 (MQ=255)
                                                                    ttGATGAATAATAAAAGATTAAACCAAATACATTGTG‑TTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑GA‑‑AA‑A‑AAAAAA‑AAAAAAT‑AAT‑ATAA‑‑TTTTAAAAAAATAAAAAATTTTTTTTAAATTAattattaattat                                                              >  2:4300600/1‑122 (MQ=255)
                                                                    ttGATGAATAATAAAAGATTAAACCAAATACATTGTG‑TTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑G‑‑‑AA‑A‑AAAAAA‑AAAAAAT‑AAT‑ATAA‑‑TTTTCATAATATAAAAAATTGTTTTTAAAATAATTATTAAgtatt                                                             >  1:120139/1‑124 (MQ=255)
                                                                      ttttaataaaAAAATATTAAACCAAATA‑ATTTTGTTTTTGTTTTTTTTTTT‑A‑AAT‑TT‑‑T‑‑‑AA‑A‑AAAAAA‑AAAAAAT‑AAT‑ATAA‑‑TTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTaa                                                           <  2:2859132/124‑1 (MQ=255)
                                                                      gatgaATAATAAAAGATTAAACCAAATACATTGTG‑TTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑GA‑‑AA‑A‑AAAAAA‑AAAAAAT‑AAT‑ATAA‑‑TTTTAATAATATAAAAAATTGTTTTTCAAATAATTATTAAgtatta                                                            >  1:4407597/1‑123 (MQ=255)
                                                                       atgaATAATAAAAGATTAAACCAAATACATTGTG‑TTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑GAA‑AA‑A‑AAAAAA‑AAAAAAA‑AAA‑AAAA‑‑TTTAAATAATAAAAAAAATTTTTTTTAAAAAAATTAtaaagaaata                                                            >  2:2133969/1‑119 (MQ=255)
                                                                        tgaATAATAAAAGATTAAACCAAATACATTGTG‑TTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑GA‑‑AA‑A‑AAAAAA‑AAAAAAT‑AAT‑ATAA‑‑TTTGCATACTATAAAAAATTGTTTTTCAAATAATTATTAATGAGTaaa                                                          >  1:1954105/1‑128 (MQ=255)
                                                                        tgaATAATAAAAGATTAAACCAAATACATTGTG‑TTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑G‑‑‑AA‑A‑AAAAAA‑AAAAAAT‑AAT‑ATAA‑‑TTTACATAATATAAAAAATTTTATTTAAAAAAAGTATTAAGTA‑TAAAtt                                                        >  2:2782322/1‑128 (MQ=255)
                                                                          aataatAAAAGATTAAACCAAATACATTGTG‑TTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑G‑‑‑AA‑A‑AAAAAA‑AAAAAAT‑ATT‑ATAA‑‑TTTGATAACTATAAAAAATAGTTTTAAAAATAAGTATTCAGGAgatatttt                                                       >  1:3865984/1‑121 (MQ=255)
                                                                                  aaGATTAAACCAAATACATTGTG‑TTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑GAA‑AA‑A‑AAAAAA‑AAAAAAT‑AAT‑ATAA‑‑TTTCAATAATATAAAAAATTATTATAAAAATAATAATAAAGAATAAAATTTaaaaaa                                                 >  1:5366286/1‑128 (MQ=255)
                                                                                   aGATTAAACCAAATACATTGTG‑TTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑GA‑‑AA‑A‑AAAAAA‑AAAAAAT‑AAT‑ATAA‑‑TTTTAATAATATAAAAAATTTTTTTTAAAATAATTATTAATGATTAAATTTAAAAAAca                                               >  1:3337697/1‑127 (MQ=255)
                                                                                     aTTAAATAAAATTTATTTTT‑TTTGGTTTTTTTATTT‑A‑ATATTT‑‑A‑‑‑AA‑A‑AAAAAA‑AAAAAAT‑AAT‑ATAA‑‑TTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCaa                                             <  1:3992709/128‑1 (MQ=255)
                                                                                     aTTAAACCAAATACATTGTG‑TTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑GA‑‑AA‑A‑AAAAAA‑AAAAAAA‑AAA‑AAAA‑‑TTTAAAAAAAAAAAAAAATTTTTTTTAAAATAATTATTAATAAAAAAATTAAAAAAACaaa                                             >  2:3719766/1‑128 (MQ=255)
                                                                                      ttAAACCAAATACATTGTG‑TTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑GA‑‑AA‑A‑AAAAAA‑AAAAAAT‑AAT‑ATAT‑‑TTTGAATAATATAAAAAATTTTTTTTAAAAAATTTATTCAGTAGTAAATTTAAAAAACaaaa                                            >  1:1523950/1‑127 (MQ=255)
                                                                                      ttAAACCAAATAAATTTTG‑TTTGGTTTTTTTATTT‑A‑ATA‑TT‑‑T‑‑‑AA‑A‑AAAAAA‑AAAAAAT‑AAT‑ATAA‑‑TTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAaga                                           <  1:2241351/128‑1 (MQ=255)
                                                                                        aaaaaaaaTATATTGTT‑TTTGTTTTTTTTTTTT‑A‑ATA‑TT‑‑T‑‑‑AA‑A‑AAAAAA‑AAAAAAT‑AAT‑ATAA‑‑TTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGt                                         <  2:1465961/123‑1 (MQ=255)
                                                                                         aaCCAAATACATTGTG‑TTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑GA‑‑AA‑A‑AAAAAA‑AAAAAAT‑AAT‑AAAA‑‑TTTGAATAATATAAAAAATTTTTTTTAAAATAATTATAAATGATTAAATTTAAAAAACaaataat                                         >  2:4768587/1‑124 (MQ=255)
                                                                                         aaCAAAAAAAATTTTA‑TTTGGTTTTTTTATTT‑A‑ATT‑TTTAA‑‑‑AA‑A‑AAAAAA‑AAAAAAT‑AAT‑ATAA‑‑TTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAagag                                          <  2:5409682/128‑1 (MQ=255)
                                                                                           ccAAATACATTGTG‑TTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑G‑‑‑AA‑A‑AAAAAA‑AAAAAAT‑AAT‑ATAA‑‑TTTGAATACTATAAAAAATTTTTTTTAAAATAATTATTAATTATTAAATTTAAAAAACaaatatatat                                      >  1:97114/1‑121 (MQ=255)
                                                                                            cAATTACATTTTG‑TTTTGTTTTTTTATTT‑A‑ATA‑AT‑‑T‑‑‑AA‑A‑AAAAAA‑AAAAAAT‑AAT‑ATAA‑‑TTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTtata                                     <  2:199563/128‑1 (MQ=255)
                                                                                            cAAATAATTTTTT‑TTTGGTTTTTTTATTT‑A‑ATA‑TT‑‑GA‑‑AA‑A‑AAAAAA‑AAAAAAT‑AAT‑ATAA‑‑TTTGCATACTATAAAAAATTGTTTTTCTAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGATTtat                                      <  1:128629/128‑1 (MQ=255)
                                                                                            cAAAAAAATTGTG‑TTTGGTTTTTTTTTTT‑A‑ATT‑AT‑‑T‑‑‑AA‑A‑AAAAAA‑AAAAAAT‑AAT‑ATAA‑‑TTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTtata                                     <  2:1187845/128‑1 (MQ=255)
                                                                                             aattACTTTTTG‑TTTTGTTTTTTTAATT‑A‑ATATTT‑‑A‑‑‑AA‑A‑AAAAAA‑AAAAAAT‑AAT‑ATAA‑‑TTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTtata                                     <  2:1856423/125‑1 (MQ=255)
                                                                                             aaaTACATTTTT‑TTTGTTTTTTTTTTTTAA‑ATT‑TT‑‑A‑‑‑AA‑A‑AAAAAA‑AAAAAAT‑AAT‑ATAA‑‑TTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTtata                                     <  2:1330166/128‑1 (MQ=255)
                                                                                             aaaTACATTGTT‑TTTGTTTTTTTTATTT‑A‑ATATTT‑‑A‑‑‑AA‑A‑AAAAAA‑AAAAAAT‑AAT‑ATAA‑‑TATGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGATTtata                                     <  1:256076/128‑1 (MQ=255)
                                                                                             aaaTACATTGTG‑TTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑GA‑‑AA‑A‑AAAAAA‑AAAAAAT‑AAT‑ATAA‑‑TTTGCATACAATAAAAAATTGTTTTTAAAAAAAGTATTAAGGATTAAATTTAAAAAAACAagctgtata                                     >  2:3063333/1‑121 (MQ=255)
                                                                                             aaaTACATTGTG‑TTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑GA‑‑AA‑A‑AAAAAA‑AAAAAAT‑AAT‑ATAA‑‑TTTGAATAATATAAAAAATTTTTTTTAAAATAATTATTCAGTATTAAATTTAAAAAACAAATAGTaata                                     >  1:5447582/1‑128 (MQ=255)
                                                                                             aaaTACATTGTG‑TTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑G‑‑‑AA‑A‑AAAAAA‑AAAAAAT‑AAT‑ATAA‑‑TTTGAAAAATATAAAAAATTGTTTTTAAAATAATTATTAATTATTAAATTAAAAAAACCaaagaacgtaa                                    >  1:2834624/1‑119 (MQ=255)
                                                                                               aTACATTGTG‑TTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑G‑‑‑AA‑A‑AAAAAA‑AAAAAAT‑AAA‑ATAA‑‑TTTGCAAAATATAAAAAATTTTTTTTAAAATAATTATTAATAATTAAATTTAAAAAAACAAAAGTTATAAAt                                  >  2:1653179/1‑128 (MQ=255)
                                                                                               aTACATTGTG‑TTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑G‑‑‑AA‑A‑AAAAAA‑AAAAAAA‑AATAATAAATTTTGAATAATATAAAAAATTTTTTTAAAAATAATTATTAAGTATTAAATTTAAAAAACAAATAGTtata                                     >  1:1122785/1‑128 (MQ=255)
                                                                                                taaaTTGTT‑TTTGTTTTTTTTATTT‑A‑AAATTT‑‑A‑‑‑AA‑A‑AAAAAA‑AAAAAAT‑AAT‑ATAA‑‑TTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAAt                                  <  2:2618015/125‑1 (MQ=255)
                                                                                                tACATTGTG‑TTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑G‑‑‑AA‑A‑AAAAAA‑AAAAAAA‑AAT‑ATAT‑‑TTGGAATAATTTAAAAAATTTTTTTAAAAAAAATTATTATTAATAAAATTAAAAAAACAAATATTTATaataa                                 >  1:896725/1‑125 (MQ=255)
                                                                                                caCAATGTA‑TTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑GAAAAA‑A‑AAAAAA‑AAAAAAT‑AAA‑ATAA‑‑TTTGAATAATATAAAAAATTTTTTTTAAAATAATTAATAATAATTAAATTTAAAAAACAAATATTTATaa                                    >  1:1000173/2‑128 (MQ=255)
                                                                                                aaaaatttgttttGGTTTTTTTATTT‑A‑AAATTT‑‑A‑‑‑AA‑A‑AAAAAA‑AAAAAAT‑AAT‑ATAA‑‑TTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATaaa                                   <  2:4012811/118‑1 (MQ=255)
                                                                                                  taattttttttGTTTTTTTTATTT‑A‑ATA‑TT‑‑T‑‑‑AA‑A‑AAATAA‑AAAAAAT‑AAT‑ATAA‑‑TTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCt                                <  2:856355/120‑1 (MQ=255)
                                                                                                   tttgtt‑tttgtttTTTTTATTT‑A‑ATATTT‑‑A‑‑‑AA‑A‑AAAAAA‑AAAAAAT‑AAT‑ATAA‑‑TTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCtt                               <  2:178073/127‑1 (MQ=255)
                                                                                                   aatgta‑TTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑GAA‑AA‑A‑AAAAAA‑AAAAAAT‑AAT‑ATAA‑‑TTTGAATACTATAAAAAATTGTTTTTAAAATAATTATTAAGGAGTAAATTTAAAAAACAAATAGTTATaaaaat                                >  2:693515/3‑125 (MQ=255)
                                                                                                   aTTGTG‑TTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑GAA‑AA‑A‑AAAAAA‑AAAAAAT‑AAT‑ATAA‑‑TTTGCAAACTATAAAAAATTTTTTTTAAATTAATTATTAATTAGTAAATTTAAAAAAAAAATATTTATAAATCt                                >  1:3671574/1‑128 (MQ=255)
                                                                                                    ttGTG‑TTTTGTTTTTTAATTT‑A‑CTA‑TT‑‑GA‑‑AA‑A‑AAAAAA‑AAAAAAT‑AAT‑ATAA‑‑TTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTg                              <  2:3836868/128‑1 (MQ=255)
                                                                                                       tg‑tTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑G‑‑‑‑A‑A‑AAAAAA‑AAAAAAT‑AAT‑ATAA‑‑TTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTTGtttt                         >  1:5163264/1‑128 (MQ=255)
                                                                                                          tttGTTTTTTTTATTT‑A‑CTATTT‑‑A‑‑‑AA‑A‑AAAAAA‑AAAAAAT‑AAT‑ATAA‑‑TTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGtttt                         <  1:2356229/128‑1 (MQ=255)
                                                                                                            tGGTTTTTTTATTT‑A‑CTA‑TT‑‑G‑‑‑AA‑A‑AAAAAA‑AAAAAAT‑AAT‑ATAA‑‑TTTGAATACTATAAAAAATTTTTTTTCAAATAATTATTAATTATTAAATTTAAAAAACAAAAATTTAAAATACTTGGttttatt                      >  2:3494385/1‑125 (MQ=255)
                                                                                                               tttttttATTT‑A‑CTA‑TT‑‑G‑‑‑AA‑A‑AAAAAT‑ATAAAAT‑AAT‑ATAA‑‑TTTGTATACTATAAAAAATTGTTTTTCAAATAAGTATTGAGGAGTATATTTAATTAACCAAGAGTTATAAATCTTGGTTTTTTGttt                   <  2:5502533/128‑1 (MQ=255)
                                                                                                               tttttttA‑TT‑A‑TTA‑TT‑‑G‑‑‑AA‑ATAAAAAA‑AAAAAAT‑AAT‑ATAA‑‑TTTGCATACTATTAAAAATTGTTTTTCAAATAAGTATTCTGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGttt                   <  1:3573388/128‑1 (MQ=255)
                                                                                                                  ttttATTT‑A‑CTA‑TT‑‑GA‑‑AA‑A‑AAAAAA‑AAAAAAT‑AAT‑ATAA‑‑TTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGATTAATTTTAAAAAACAAAGATTTATAAATATTGGTTTTTTGTTtat                 >  1:4710784/1‑128 (MQ=255)
                                                                                                                  ttttATTT‑A‑CTA‑TT‑‑G‑‑‑AA‑A‑AAAAAA‑AAAAAAT‑AAT‑ATAT‑‑TTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTAAGGAGTAAATTTAAAAAACCAAGAGTTATAAAAATTGGTTTTTTGTTtatt                >  1:4953782/1‑127 (MQ=255)
                                                                                                                  ttttATTT‑A‑ATATTT‑‑A‑‑‑AA‑A‑AAAAAA‑AAAAAAT‑AAT‑ATAA‑‑TTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTtat                 <  1:4333183/128‑1 (MQ=255)
                                                                                                                  ttttATTT‑A‑ATA‑TT‑‑T‑‑‑AA‑A‑AAAAAA‑AAAAAAT‑AAT‑ATAA‑‑TTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTtata                <  1:2060153/128‑1 (MQ=255)
                                                                                                                   tttattt‑a‑TTT‑TT‑‑G‑‑‑AA‑A‑AAAAAATAAAAAAT‑AAT‑ATAA‑‑TTTGAATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTtata                <  2:2329344/128‑1 (MQ=255)
                                                                                                                   tttattt‑a‑TTA‑TT‑‑T‑‑‑AA‑A‑AAAAAA‑AAAAAAT‑AAT‑ATAA‑‑TTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTatat               <  2:3196658/128‑1 (MQ=255)
                                                                                                                   tttattt‑a‑CTA‑TT‑‑GAAAAA‑A‑AAAAAA‑AAAAAAA‑AAT‑ATAA‑‑TTTGAATAATTTAAAAATTTTTTTTTAAAAAAATTATTAAGGAGTAATTTTAAAAAACAAAGATTTTTAAATATTGG‑TTTTTGTTtat                 >  1:405990/1‑128 (MQ=255)
                                                                                                                    ttattt‑a‑CTA‑TT‑‑GAA‑AA‑A‑AAAAAA‑AAAAAAA‑AAT‑ATAT‑‑TTTGAATAATATAAAAATTTTTTTTTAAAAAAATTATAAAGTTTAAAATTTAAAAAACAAATATTTAAAAAATTTGTTTTTTTTTTtatt                >  1:4843686/1‑127 (MQ=255)
                                                                                                                    ttattt‑a‑CTA‑TT‑‑G‑‑‑AA‑A‑AAAAAA‑AAAAAAT‑AAA‑AAAA‑‑TTTAAAAAATATAAAAAATTTTTTTTAAAAAAATAATTAAATATTAAATTAAAAAAAAAAAAATATATAAATATTTTTTTTTTTTTTAtttt              >  2:2229860/1‑128 (MQ=255)
                                                                                                                    ttattt‑a‑ATA‑TT‑‑T‑‑‑AA‑ATAAAAAA‑AAAAAAT‑AAT‑ATAA‑‑TTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTCGTTTTTTGTTTatat               <  2:1536850/128‑1 (MQ=255)
                                                                                                                        tt‑a‑CTA‑TT‑‑G‑‑‑AA‑A‑AAAAAA‑AAAAAAT‑AAT‑ATAT‑‑TTTGCATAATATAAAAAATTGTTTTTAAAATAATTATTCATGATTAAATTTAAAAAACAAAGATTTATAAATATTGGTTTTTTTTTTAtattatta          >  1:5532267/1‑128 (MQ=255)
                                                                                                                              aa‑TT‑‑A‑‑‑AA‑A‑AATAAA‑AAAAAAT‑AAT‑ATTA‑‑TTTGAATACTTTAATAAATTGTTTTTCATATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTATATTATTATTTg      <  1:14182/127‑1 (MQ=255)
                                                                                                                               a‑TT‑‑G‑‑‑AA‑A‑AAAAAA‑AAAAAAT‑AAT‑ATAA‑‑TTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGATTAAATTTAAAAAACCAAGATTTATAAATATTGTTTTTTTTTTTATATTTTTAttttt     >  2:4622417/1‑126 (MQ=255)
                                                                                                                                  t‑‑G‑‑‑AA‑A‑AAAAAA‑AAAAAAA‑AAT‑ATAA‑‑TTTGCATACTTTAAAAAATTGTTTTTAAAATAATTATTCAGGATTAAATTAAAAAAACCAAGATTTAAAAAAATTGTTTTTTTTTTTTTATTATTATTTGtgt   >  1:4542520/1‑126 (MQ=255)
                                                                                                                                      |                                                                                                                                        
CTTTACTTCTTTATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTG‑TTTGGTTTTTTTATTT‑A‑CTA‑TT‑‑G‑‑‑AA‑A‑AAAAAA‑AAAAAAT‑AAT‑ATAA‑‑TTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTATATTATTATTTGTCTT  >  CP016816/34818‑35072

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑