Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP01681676,8930T.57.8% inf / inf 1957intergenic (‑142/+43)JCVSYN2_00300/JCVSYN2_00305UTP‑‑glucose‑1‑phosphate uridylyltransferase/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (408/311);  new base . (557/426);  total (968/989)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.23e-01

Only 100 of 2397 total aligned reads displayed.

AAATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTT‑AAATTCAAATAACATTATATAAAGA‑TAAATTTTTTAAAGAAAAATATT‑ACAAC‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTAAATCAGTGATCTTT  >  CP016816/76765‑77020
                                                                                                                                     |                                                                                                                               
 aaTTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTT‑AAATTCAAATAACATTATATAAAGA‑TAAATTTTTTAAAGAAAAATATT‑ACAAC‑‑t                                                                                                                                 >  2:1167862/1‑128 (MQ=255)
   tttATATATATTAGTTAACTTAAGGATGTATAATACAAATTAATAATAACTTTACAAACCAAATTCCCCTTT‑AAATTAAAATAACATTATATAAAGA‑TAAATTTTTTAAAGAAAAATATT‑ACAAC‑‑ttt                                                                                                                               <  1:2141248/128‑1 (MQ=255)
    ttATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTT‑AAATTCAAATAACATTATATAAAGA‑TAAATTTTTTAAAGAAAAATATT‑ACAAC‑‑tttt                                                                                                                              >  1:4660918/1‑128 (MQ=255)
    ttATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTT‑AAATTCAAATAACATTATATAAAGA‑TAAATTATTTAAAGAAAAATATT‑ACAAC‑‑tttt                                                                                                                              >  1:2817137/1‑128 (MQ=255)
      atatatatTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTT‑AAATTCAAATAACATTATATAAAGA‑TAAATTTTTTAAAGAAAAATATT‑ACAAC‑‑tttttt                                                                                                                            >  1:3040623/1‑128 (MQ=255)
       tatatatTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTT‑AAATTCAAATAACATTATATAAAGA‑TAAATTTTTTAAAGAAAAATATT‑ACAAC‑‑ttttttt                                                                                                                           >  1:1189445/1‑128 (MQ=255)
        atatatTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTT‑AAATTCAAATAACATTATATAAAGA‑TAAATTTTTTAAAGAAAAATATT‑ACAAC‑‑tttttttt                                                                                                                          <  2:885910/128‑1 (MQ=255)
         tatatTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTT‑AAATTCAAATAACATTATATAAAGA‑TAAATTTTTTAAAGAAAAATATT‑ACAAC‑‑ttttttttt                                                                                                                         >  2:1474531/1‑128 (MQ=255)
         tataaTATTTAACATAAGGATGTATAAAACAAATTAATAAAAACTGTACAACCCAAATTCCCCTTT‑AAATTCAAATAACATTAAAAAAATA‑TAAATTTTTTAAAGAAAAATATT‑ACAAC‑‑ttttttttt                                                                                                                         <  2:5494409/128‑1 (MQ=255)
          atatTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTT‑AAATTCAAATAACATTATATAAAGA‑TAAATTTTTTAAAGAAAAATATT‑ACAAC‑‑tttttttttt                                                                                                                        >  2:4892175/1‑128 (MQ=255)
          atatTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTT‑AAATTCAAATAACATTATATAAAGA‑TAAATTTTTTAAAGAAAAATATT‑ACAAC‑‑tttttttttt                                                                                                                        >  1:5072105/1‑128 (MQ=255)
          atatTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTT‑AAATTCAAATAACATTATATAAAGA‑TAAAGTTTTTAAAGAAAAATATT‑ACAAC‑‑tttttttttt                                                                                                                        >  2:1000274/1‑128 (MQ=255)
          atatTAGTGAAATTAATGATTTATAAAAAAAAATAAAAAAAAATTTACAACCCAAAATCCCCTTT‑AAATTCAAATAACATTATATAAATA‑TAAATTTTTTAAACAAAAATATT‑ACAAC‑‑tttttttttt                                                                                                                        <  2:5125463/128‑1 (MQ=255)
           tatTAGTCAACTTAAGGATGTATAATACAAATTAAAAATAACTGTACAACCCAAATTCCCCTTT‑AAATTCAAATAACATTATATAAAGA‑TAAATTTTTTAAAGAAAAATATT‑ACAAC‑‑ttttttttttt                                                                                                                       <  1:2603775/128‑1 (MQ=255)
                ttgaaaatAATGATGTATAAAAAAAATTAATAATAAATTTAAAACACAAATTACCCTTT‑AAATTCAAATAAAATTATATAAATA‑TAAATTTTTTAAATAAAAATATT‑AAAAA‑‑tttttttttttttttg                                                                                                                  <  2:3804708/121‑2 (MQ=255)
                 tGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTT‑AAATTCAAATAACATTATATAAAGA‑TAAATTTTTTAAAGAAAAATATT‑ACAAC‑‑ttttttttttttttttt                                                                                                                 >  2:4044660/1‑127 (MQ=255)
                  taaattAAGGATGTATAAAACAAATTAATAATAAATGTAAAAACCAAATTCCCCTTT‑AAATTCAAATAAAATTATATAAATA‑TAAATTTTTTAAAGAAAAATATT‑ACAAC‑‑tttttttttttttggaac                                                                                                                <  1:2512375/124‑6 (MQ=255)
                    aCTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTT‑AAATTAAAATAACATTATATAAATA‑TAAATTTATTAAAGAAAAATATT‑ACAAC‑‑atttttttttttttttataa                                                                                                              >  2:2301561/1‑124 (MQ=255)
                    aCTTAAGGATGTATAATACAAATTAAAAAAAACTGTACAAACCAAATTCCACTTT‑AAATTCAAATAACATTATATAAATA‑TAAATTTTTTAAAGAAAAATATT‑ACAAC‑‑ttttttttttttttggaact                                                                                                              <  1:3662644/128‑7 (MQ=255)
                     cTTAAGGATTTATAATAAAAATTAATAAAAAATTTACAAACCAAATTACCCTTT‑AAATTCAAATAACATTATAAAAATA‑AAAATTTTTTAAAGAAAAATATT‑AAAAA‑‑TTTTTTTTTTTTTTTTGGAAc                                                                                                             <  2:2558081/128‑1 (MQ=255)
                       tAATGATTTATAAAAAAAATTAAAAATAACTTTAAAAACCAAATTACCCTTT‑AAATTAAAAAAAAATTAAATAAAAA‑TAAATTTTTTAAATAAAAAAATTAAAAAA‑‑TTTTTTTTTTTTTTTTGGAACt                                                                                                            <  1:4838710/128‑1 (MQ=255)
                        aatgATGTATAATAAAAAATAATAAAAAATTTAAAACCCAAATTCACATTT‑AAATTCAAAAAAAATTATATAAATA‑TAAATTTTTTAAAGAAAAATAAT‑ACAAC‑‑‑TTTTTTTTTTTTTTTGGAACTAAc                                                                                                         <  1:3908007/125‑1 (MQ=255)
                         aGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTT‑AAATTCAAATAACATTATATAAAGA‑TAAATTTTTTAAAGAAAAATATT‑ACAAC‑‑ttttttttttttttttaaataacat                                                                                                         >  2:4477351/1‑119 (MQ=255)
                         aGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTT‑AAATTCAAATAACATTATATAAAGA‑TAAATTTTTTAAAGAAAAATATT‑ACAAC‑‑ttcttttttttttttttttttttaa                                                                                                         >  1:3182286/1‑119 (MQ=255)
                            aTGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTT‑AAATTCAAATAACATTATATAAAGA‑TAAATTTTTTAAAGAAAAATATT‑ACAAC‑‑‑TTTTTATTTTTTTTTGTAAATAACataa                                                                                                     >  1:1264952/1‑127 (MQ=255)
                             tGTATAAAAAAAATTAAAAATAAATTTAAAAACCAAATTACCCATT‑AAAATTAAATAAAATTATAAAAATT‑TAAATTTTTTAAATAAAAATATT‑ACAA‑‑‑‑ATTTTTTTTTTTTTTGGAACTAACATATaa                                                                                                   <  2:3218424/128‑1 (MQ=255)
                              gTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTT‑AAATTCAAATAACATTATATAAAGA‑TAAATTTTTTAAAGAAAAATATT‑ACAAC‑‑TTTTTTTTTTTTTTTTTAAAAAAACAtata                                                                                                    >  2:1578337/1‑128 (MQ=255)
                              gTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTT‑AAATTCAAATAACATTATATAAAGA‑TAAATTTTTTAAAGAAAAATATT‑ACAAC‑‑‑TTTTTTTTTTTTTTTGTAACTAACATATaa                                                                                                   >  1:326893/1‑128 (MQ=255)
                               tataATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTT‑AAATTCAAATAACATTATATAAAGA‑TAAATTTTTTAAAGAAAAATATT‑ACAAC‑‑‑‑TTTTTTTTTTTTTTGGAACTAAAAAAAAAtt                                                                                                 >  1:5249599/1‑128 (MQ=255)
                               caaaaaaaaaaTTAATATTAAAAGTAACACCCATATTTAACTTT‑AAAATAAATTAAAAATTAATAAATA‑TAATTTTTTTAAAAATAAAAATT‑ACAA‑‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAAt                                                                                                  <  2:1088538/120‑1 (MQ=255)
                                ataataCAAATTAATAATAACTGTACAACCCAAATTCCCCTTT‑AAATTCAAATAACATTATATAAAGA‑TAAATTTTTTAAAGAAAAATATT‑ACAAC‑‑‑‑‑TTTTTTTTTTTTTGGAACTAACATATAAtttt                                                                                               >  2:4304108/1‑128 (MQ=255)
                                ataataCAAATTAATAATAAATGTAAAACCAAAATTCCCCTTT‑AAATTAAAATAAAATTATATAAATA‑TAAATTTTTTAAATAAAAATATT‑ACAAA‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAAt                                                                                                  <  2:616390/128‑1 (MQ=255)
                                  aataCAAATTAATAATAACTGTACAACCCAAATTCCCCTTT‑AAATTCAAATAACATTATATAAAGA‑TAAATTTTTTAAAGAAAAATATT‑ACAAC‑‑TTTTTTTTTATTTTTT‑TAACAAACAAATAAttta                                                                                               >  1:2260676/1‑127 (MQ=255)
                                  aataCAAATTAATAAAAAATGTAAAACCAAAATTCCCCTTT‑AAATTCAAATAAAATTATATAAAGA‑TAAATTTTTTAAAGAAAAATATT‑ACAAC‑‑‑‑TTTTTTTTTTTTTTGGAACTAACATATAATTTTa                                                                                              <  2:343925/128‑1 (MQ=255)
                                   ataCAAATTAATAATAACTGTACAACCCAAATTCCCCTTT‑AAATTCAAATAACATTATATAAAGA‑TAAATTTTTTAAAGAAAAATATT‑ACAAC‑‑TTTTTTTTTTTTTTTTTAAAAAAAAAAATAAttta                                                                                               >  1:1003459/1‑127 (MQ=255)
                                       aaaTTAATAAAAACTGTAAAAACCAATATCAACTTT‑AAAATAAAATAACATTATTATAATA‑AAAATTTTTTTAATAAAAATATT‑AAAACT‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTAcc                                                                                            <  1:4560258/128‑1 (MQ=255)
                                       aaaTTAATAAAAACAGTACAACCCAAATTACCCTTT‑AAATTCAAATTACATTATATAAAGA‑TAAATTTATTAAATAAAAAAATT‑ACAAC‑‑‑‑TTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAat                                                                                         <  1:416997/128‑1 (MQ=255)
                                       aaaTTAAAAAAAACTTTAAAAACCAAATTACCCATT‑AAAATAAAATAAAATTTTATAAATA‑AAAATTTTTTAAATAAAAAAATT‑ACAA‑‑‑ATTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCaa                                                                                          <  1:437419/128‑1 (MQ=255)
                                        aaTTAATAATAACTTTAAAACCCAAATTCCCCTTTAAAATACTAATAA‑ATTATTTAAATA‑TTAAATTTTTTAATTAAAATATT‑TCAA‑‑‑‑ATTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAatt                                                                                        <  2:3669054/128‑1 (MQ=255)
                                         aTTAATAATAACTGTACAACCCAAATTCCCCTTT‑AAATTCAAATAACATTATATAAAGA‑TAAATTTTTTAAAGAAAAATATT‑ACAAC‑‑TTTTTTTTTTTTTTTTTGAACTAAAATATAATTTTACCAat                                                                                         >  2:4727983/1‑128 (MQ=255)
                                              taataaATGTACAAACCAAAATCCCCTTT‑AAATTAAAAAAACATTATATAAATA‑TAAATTTTTTAAATAAAAATAAT‑AAAAC‑‑‑‑TTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGa                                                                                  <  2:3577622/128‑1 (MQ=255)
                                               aataaCTGTACAACCCAAATTCCCCTTT‑AAATTCAAATAACATTATATAAAGA‑TAAATTTTTTAAAGAAAAATATT‑ACAAC‑‑‑TTTTTTTTTTTTTTGGGAAGTAAAATATAA‑TTTACCAatttttttga                                                                                 >  2:69100/1‑124 (MQ=255)
                                               aataaCTGTACAAACCAAAATACCCTTT‑AAATTCAAATAACATTATATAAATA‑TAAATTTTTTAAATAAAAATATT‑ACAACT‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAAttatta                                                                                    <  1:73162/128‑1 (MQ=255)
                                                  aaCTGTACAACCCAAATTCCCCTTT‑AAATTCAAATAACATTATATAAAGA‑TAAATTTTTTAAAGAAAAATATT‑ACAAC‑‑‑‑TTTTTTTTTTTTTTGGAAATAACATAAAATTTTAAAAATT‑TTTGaatttt                                                                             >  2:1966256/1‑127 (MQ=255)
                                                     tGTACAACCCAAATTCCCCTTT‑AAATTCAAATAACATTATATAAAGA‑TAAATTTTTTAAAGAAAAATATT‑ACAAC‑‑‑‑TTTTTTTTTTTTTTGGAACTAACATATAATTTTACAAATTATTAGaatttaaa                                                                           >  1:5165301/1‑128 (MQ=255)
                                                     tGTACAACCCAAATTCCCCTTT‑AAATTCAAATAACATTATATAAAGA‑TAAATTTTTTAAAGAAAAATATT‑ACAAC‑‑‑‑TTTTTTTTTTTTTTGGAACTAACAAATAATTTTTCCAATTATTAGaatttcaa                                                                           >  2:2430096/1‑128 (MQ=255)
                                                       tACAACCCAAATTCCCCTTT‑AAATTCAAATAACATTATATAAAGA‑TAAATTTTTTAAAGAAAAATATT‑ACAAC‑‑‑‑TTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGaatttcaatt                                                                         >  1:1536579/1‑128 (MQ=255)
                                                       tACAAACCAAATTACCATTT‑AAATTAAAATAAAAATATAAAAATA‑TAAATTTTTTAAATAAAAATATT‑ACAA‑‑‑ATTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGaatttcaat                                                                          <  1:1621713/128‑1 (MQ=255)
                                                        acaaaacAAATTTCCCTTT‑AAATTAAAATTAAATTATATAAATA‑TAAATTTTTTATATAAAAATATT‑AAAAC‑‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGaatttcaatt                                                                         <  1:3756086/122‑1 (MQ=255)
                                                         cAACCCAAATTCCCCTTT‑AAATTCAAATAACATTATATAAAGA‑TAAATTTTTTAAAGAAAAATATT‑ACAAC‑‑TTTTTTTTTTTTTTTT‑GAAATAAAATAAAATTTTACCAATTATTAGaatttaaattt                                                                        >  2:3345069/1‑128 (MQ=255)
                                                          aaaccAAAATTCCATTT‑AAAATAAAATAAAATTATATAAATA‑TAAAATTTTTAAATAAAAATATT‑A‑AAA‑‑ATTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGaatttcaatttc                                                                       <  1:293811/125‑1 (MQ=255)
                                                           aCCCAAATTCCCCTTT‑AAATTCAAATAACATTATATAAAGA‑TAAATTTTTTAAAGAAAAATATT‑ACAAC‑‑TTTTTTTTTTTTTTTT‑‑AAATAAAATATAATTTTACAAATTATTAGaatttaaatttaaa                                                                     >  1:2702673/1‑125 (MQ=255)
                                                              cAAATTCCCCTTT‑AAATTCAAATAACATTATATAAAGA‑TAAATTTTTTAAAGAAAAATATT‑ACAAC‑‑‑TTTTTTTTTTTTTTTGGAACTAACTTATAATTTTACCAATTATTAGAATTTCAATTTAACAg                                                                   >  2:1789605/1‑128 (MQ=255)
                                                                aaTTCCCCTTT‑AAATTCAAATAACATTATATAAAGA‑TAAATTTTTTAAAGAAAAATATT‑ACAAC‑‑TTTTTTTTTTTTTTTTGGAAATAAAATATAATTTTACAAATTTATATaatttaaatttaaaata                                                                  >  2:421839/1‑122 (MQ=255)
                                                                 attaaacTTT‑AAATTTAAAAAAAATTATATAAATT‑TAAATTTTTTAAATAAAAATATT‑AAAAA‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGAt                                                                 <  2:2206661/122‑1 (MQ=255)
                                                                   tacacTTT‑AAAATAAAAAAAAATTTTATAAATA‑TAAATTTTTTTAATAAAAAATAT‑ACAA‑‑‑ATTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGaa                                                              <  1:4456986/124‑1 (MQ=255)
                                                                   tCCCCTTT‑AAATTCAAATAACATTATATAAAGA‑TAAATTTTTTAAAGAAAAATATT‑ACAAC‑‑‑TTTTTTTTTTTTTTTGGAAATAACATATAATATTACCAATAATTAGCATTTCAATTTCACAGATCaa                                                              >  1:4038689/1‑128 (MQ=255)
                                                                     ccattt‑AAAATAAAATAAAATTATATAAATA‑AAAAATTTTTAAATTAAAATATT‑TCAAA‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAAt                                                             <  1:1953663/125‑1 (MQ=255)
                                                                      cattt‑AAATTAAAATAAAATTTAATAAATA‑TAAATTTTTTAAATAAAAATATT‑TAAA‑‑‑‑ATTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGa                                                          <  2:207715/126‑1 (MQ=255)
                                                                        att‑AAAATAAAAAAACATTTTATAAATA‑AAAATTTTTTAAATAAAAATATT‑AAAAC‑‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGAt                                                         <  1:657412/127‑1 (MQ=255)
                                                                         tt‑AAATTCAAATAACATTATATAAAGA‑TAAATTTTTTAAAGAAAAATATT‑ACAAC‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTgtt                                                         >  2:3101940/1‑126 (MQ=255)
                                                                          t‑AAATTCAAATAACATTATATAAAGA‑TAAATTTTTTAAAGAAAAATATT‑ACAAC‑‑TTTTTTTTTTTTTTTTGGAAAAAAAATATAATTTTAACAATAATTATAATTAAAATTAAACAGATAAATTTAtt                                                        >  2:5012694/1‑128 (MQ=255)
                                                                            aaaTTCAAATAACATTATATAAAGA‑TAAATTTTTTAAAGAAAAATATT‑ACAAC‑‑TTTTTATTTTTTTTTT‑TAAATAACATATAATATAACCAATTAATAAAATTAAAATTTAAAAAATAAATTGAatta                                                      >  2:4140446/1‑127 (MQ=255)
                                                                            aaaTTCAAAATACAATATATTAATA‑TAAATTTTTTAAAGAAAAATATT‑ACAA‑‑‑ATTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATttc                                                      <  2:2999506/128‑1 (MQ=255)
                                                                            aaaTTAAAATAAAATTTTATAAATA‑TAAATTTTTTAAATTAAAATATT‑ACAA‑‑‑ATTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATttc                                                      <  2:2650322/128‑1 (MQ=255)
                                                                              ataaaaaTAAAATTATTTAATTA‑TAATTTTTTAAATTAAAAATTTT‑AAAAA‑‑‑‑‑‑TTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCta                                                 <  2:3915234/124‑1 (MQ=255)
                                                                              aataaaaTAAAAATATTTTAATA‑AAAATTTTTTTAAAAAAAATAAT‑A‑AAA‑‑ATTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATttctt                                                    <  1:1786999/124‑1 (MQ=255)
                                                                              aTTAAAATAAAATTATATAAATA‑TAAATTTTTTAAATAAAAATATT‑AAAAC‑‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATttctt                                                    <  2:4408988/128‑1 (MQ=255)
                                                                                taaaaTAAAATTATATAAATA‑TAAATTTTTTAAATAAAAATATT‑AAAA‑‑‑‑ATTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCta                                                 <  2:1679520/126‑1 (MQ=255)
                                                                                  aaaTAAAATTATATAAAGA‑TAAATTTTTTAAATAAAAAAATT‑AAAAA‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCta                                                 <  2:1364666/128‑1 (MQ=255)
                                                                                   aaTAAAATTATATAAATA‑TAAATTTTTTAAATAAAAATATT‑AAAAC‑‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCtaat                                               <  1:4755464/128‑1 (MQ=255)
                                                                                    aTAAAATTATATTTATATTAATTTTTTTAATTAAAAATTTT‑ATAA‑‑‑TTTTTTTTTTTTTTTT‑GTACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCtaata                                              <  1:2050592/128‑1 (MQ=255)
                                                                                     tatcATTAAATAAATT‑AAAATTTTTTAAATAAAAATTTT‑ACAAA‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCtaata                                              <  2:4565983/125‑1 (MQ=255)
                                                                                       aaaTTTTATTAATA‑TTAATTTTTTTAATTAAAATTTT‑AAAA‑‑‑‑ATTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAAttt                                          <  1:817328/126‑1 (MQ=255)
                                                                                        cATTATATAAAGA‑TAAATTTTTTAAAGAAAAATATT‑ACAAC‑‑TTTTTTTTTTTTTTTT‑GAAATAAAATATAATTTAACAAATTATTAAAATTTCAATTTAACATATAATTTTATTTATTATAATAtttt                                          >  1:1856351/1‑128 (MQ=255)
                                                                                            taataaata‑aAAATTTTTTTAAAAAAAAAATT‑AAAAC‑‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCt                                      <  1:3554231/126‑1 (MQ=255)
                                                                                            atataAAGA‑TAAATTTTTTAAAGAAAAATATT‑ACAAC‑‑‑‑TTTTTTTTTTTTTTGGAACTAACATATAATTTTACAAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTTTAATAATTTGtatt                                     >  1:1345059/1‑125 (MQ=255)
                                                                                             tataAAGA‑TAAATTTTTTAAAGAAAAATATT‑ACAAC‑‑‑TTTTTTTTTTTTTTTGGAAATAAAATATAATTTTACCAATTATTAAAATTTAAATTTAACATATGAATTGATTTCTTCTAATAATTTGTCta                                     >  2:4652843/1‑128 (MQ=255)
                                                                                               taAATA‑TAAATTTTTTAAATAAAAATATT‑AAAAC‑‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCtata                                   <  1:1103516/128‑1 (MQ=255)
                                                                                                aaaGA‑TAAATTTTTTAAAGAAAAATATT‑ACAAC‑‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTAAATTTCAAATATTAATTGATTTCTAATAATAAttttgatatat                                  >  1:2344861/1‑120 (MQ=255)
                                                                                                 aaGA‑TAAATTTTTTAAAGAAAAATATT‑ACAACTTTTTTTTTTTTTTTTTTGGAACTAAAATATAATTTTACAAATTTTTAGAATTTAAATTTAACAGATGAATTGATTTTTTATAATAATTTTTatat                                    >  1:5355273/1‑128 (MQ=255)
                                                                                                    a‑TAAATTTTTTAAAGAAAAATATT‑ACAAC‑‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTATAATTTCAATTTCACAGATGAATTGATTTCTTCTAATTATTTGTCTATATAGaa                              >  2:5313355/1‑127 (MQ=255)
                                                                                                     aaaaaaTTTTTTAAGAAAAATATT‑AAAAC‑‑‑‑TTATTTATTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATg                             <  2:5220566/126‑1 (MQ=255)
                                                                                                        ttttttttAAAGATAAATATT‑‑TAAA‑‑ATTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGtt                           <  2:1285526/126‑1 (MQ=255)
                                                                                                         aTTTTTTAAAGAAAAATATT‑ACAAC‑‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTATAATTTCAATTTCACAGATGAATTGTTTTCTTCTAATAATTTTTCtatattgtttttt                          >  1:569579/1‑120 (MQ=255)
                                                                                                         aTTTTTTAAAGAAAAATATT‑ACAAC‑‑‑‑‑‑TTTTTTTTTTTTGGAACTAACATATATATTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGAAGtttttt                       >  2:2735938/1‑128 (MQ=255)
                                                                                                            ttttAAATTAAAATAAT‑A‑AAT‑‑CTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGtttttt                       <  1:333011/128‑1 (MQ=255)
                                                                                                              ttAAATAAAAATAAT‑AAAAA‑‑‑‑TTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTtata                    <  1:1445128/128‑1 (MQ=255)
                                                                                                                 aataaaaaTATT‑TAAAA‑‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATc                  <  2:480910/125‑1 (MQ=255)
                                                                                                                   gAAAAATATT‑ACAAC‑‑TTTTTTTTTTTTTTTTTGAAAAAAAAAATAATTTTAAAAATTATTAAAATTTAAATTTAAAAAATTAATTTATTTATTAAAAAAAATTTTGTAAATATATTTTTTTtttaaaa                 >  2:1869259/1‑125 (MQ=255)
                                                                                                                     aaaaTATT‑ACAAC‑‑‑TTTTTTTTTTTTTTTGGAAATAAAATATAATTTTACCAATTATTAGAATTTAAATTTAAAATATTAATTTATTTATTATAATAATTTTTATATATAGATTTTTTTTAtaaataaa              >  1:5458504/1‑128 (MQ=255)
                                                                                                                      aaaTATT‑ACAAC‑‑‑TTTTTTTTTTTTTTTGGAAATAACATATAATTTTACCAATTATTAGAATTTAAATTTCAAATATGAATTGATTTATTATAATAATTTGTATATATATATGTTTTTTATATATAAAt             >  1:87072/1‑128 (MQ=255)
                                                                                                                      aaaTATT‑AAAAA‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTaaa              <  1:2425293/128‑1 (MQ=255)
                                                                                                                       aaTATT‑ACAAC‑‑‑‑‑TTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATATATGTTTTTTATATCTAAATCAg          >  1:4293899/1‑128 (MQ=255)
                                                                                                                        atatT‑TCATC‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTAAATc            <  2:5388382/128‑1 (MQ=255)
                                                                                                                        atatT‑ACAAC‑‑‑‑TTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATTAATTGATTTATTCTAATAATTTGTCAATATATATGTTTTTTATATATaataaat          >  2:802907/1‑123 (MQ=255)
                                                                                                                         taataatattttttttttttttttttttGGAAATATCATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATTAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTaaa              <  1:4954195/116‑1 (MQ=255)
                                                                                                                           attaaaacatttttttttttttttttGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTAAATc            <  2:2885968/118‑1 (MQ=255)
                                                                                                                                aaC‑‑ATTTTTTTTTTTTTTTGGAACTAACATATAATTTTAACAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTAAATCAGTGATc     <  1:1705891/128‑1 (MQ=255)
                                                                                                                                     ttttttttttttttttGGAAATAACATATAATTTTATCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTAAATCAGTGATcttt  <  1:3431911/128‑1 (MQ=255)
                                                                                                                                     |                                                                                                                               
AAATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTT‑AAATTCAAATAACATTATATAAAGA‑TAAATTTTTTAAAGAAAAATATT‑ACAAC‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTAAATCAGTGATCTTT  >  CP016816/76765‑77020

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑