BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP016816	203,912	0	G	T	38.0%	1192.8 / inf	949	intergenic (+296/+162)	JCVSYN2_00845/JCVSYN2_00850	lipoprotein/inorganic diphosphatase
Reads supporting (aligned to +/- strand): ref base G (170/399); new base T (347/1); total (549/400)
Fisher's exact test for biased strand distribution p-value = 0.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 1011 total aligned reads displayed.

AAAAAAATAAAAATTTTTCATTTAAAG‑CCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAAC‑GCTTTCAAAGTGTA‑TTTTTTA‑‑G‑G‑‑C‑TTG‑‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTT  >  CP016816/203785‑204039

  aaaaataaaaatTTTTCATTTAAAG‑CCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAAC‑GCTTTCAAAGTGTA‑TTTTTTA‑‑G‑G‑‑C‑TTG‑‑‑‑‑TTTTTTTTTTTTTTTTTTa                                                                                                                                >  2:4835478/1‑128 (MQ=255)

        aaaaatTTTTCATTTAAAT‑ACATTTGTAAAAAATCCTATGTTCTTGGCTTTTTTTTATAATTATCAAAAATAAAAC‑GCTTTCAAATTGTA‑TTTTTTA‑‑T‑G‑‑C‑TTGT‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAAt                                                                                                                           <  1:4124785/128‑1 (MQ=255)

         aaaatTTTTTATTTAAAT‑CCATTTGTAAAAAATCCTATGTTTAATGCTTTTTATTATAATTATAAACATTACAAC‑GCTTTCAAATTTTT‑TTTTTTT‑‑G‑G‑‑CTTTT‑‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAAT‑a                                                                                                                         <  2:3141403/128‑1 (MQ=255)

         aaaatTTTTAATTTAAAT‑CCATTTTTAAAAAATCCTATGTTCTATGCTTTTTATTATAATTAACAAAATTTAAAA‑GCATTAAAAGTTTT‑TTTTTTA‑‑T‑G‑‑C‑ATGT‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAAT‑a                                                                                                                         <  1:4287494/128‑1 (MQ=255)

          aaatTTTTTATTTAAAT‑CAATTTTTTAAAAATTATTTTTTTTTGGCTTTTTTTTATAATTATAAAAATTAAAAT‑GCTTTAAAATTTTA‑TTTTTTA‑‑G‑G‑‑CTTTT‑‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAAT‑aa                                                                                                                        <  2:2237686/128‑1 (MQ=255)

          aaatTTTTCATTTAAAG‑CCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAAC‑GCTTTCAAAGTGTA‑TTTTTTA‑‑G‑G‑‑C‑TTGT‑‑‑‑TTTTTTTTTTTTTTTTTTAAAAAT‑aa                                                                                                                        >  1:4547492/1‑128 (MQ=255)

            atTTTTCATTTAAAG‑CCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAAC‑GCTTTCAAAGTGTA‑TTTTTTA‑‑G‑G‑‑C‑TTGTT‑‑‑TTTTTTTTTTTTTTTTTTAAAAAT‑aaa                                                                                                                       >  1:2721199/1‑128 (MQ=255)

            atTTTTCATTTAAAG‑CCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAAC‑GCTTTCAAAGTGTA‑TTTTTTA‑‑G‑G‑‑C‑TTGTT‑‑‑TTTTTTTTTTTTTTTTGTAAAAAT‑aaa                                                                                                                       >  2:4246826/1‑128 (MQ=255)

            atTTTTCATTTAAAG‑CCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAAC‑GCTTTCAAAGTGTA‑TTTTTTA‑‑G‑G‑‑C‑TTGT‑‑‑‑TTTTTTTTTTTTTTTTTTAAAAAT‑aaaa                                                                                                                      >  1:4171819/1‑128 (MQ=255)

              ttttTATTTAAAT‑CAATTTTTAAAAAATCCTATGTTCTATGGTTTTTTTTATAATTATAAACATTACAAC‑TATTTAAAAGTGTT‑TTTTTTT‑‑G‑G‑‑C‑TTT‑‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAAT‑AAAAGTa                                                                                                                   <  2:641523/128‑1 (MQ=255)

              ttttCTTTTAAAG‑CCATTTTTAAAAAACCCTATGTTCTATGTTTTTTATTATAATTATCAACATTACAAC‑GCTTTCAAAGTGTA‑TTTTTTA‑‑G‑G‑‑CTTTT‑‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAAT‑AAAAGt                                                                                                                    <  1:4693174/128‑1 (MQ=255)

              ttttCATTTATAT‑CCATTTGTAAAAAAGCCTATGTTCTTGGGTTTTTATTATACTTATCAACATTTAAAC‑GCTTTCAACGTGTA‑TTTTTTA‑‑T‑G‑‑G‑TTGT‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAAT‑AAAAGt                                                                                                                    <  1:4509768/128‑1 (MQ=255)

              ttttCATTTAAAG‑CCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAAC‑GCTTTCAAAGTGTA‑TTTTTTA‑‑G‑G‑‑C‑TTGTT‑‑‑TTTTTTTTTTTTTTTTTTAAAAAT‑aaaat                                                                                                                     >  1:1731288/1‑127 (MQ=255)

               ttttATTTAAAT‑AAATTTGTAAAAAATGTTATGTTCTATTCTTTTTATTATACTTATAAACATAACAAC‑TCTTTCAAATTGTA‑TTTTTTA‑‑T‑G‑‑CTTTT‑‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAAT‑AAAAGTa                                                                                                                   <  1:2647773/128‑1 (MQ=255)

               tttCATTTATAT‑CCATTTTTAAAAAAGCGTTTGTTCTAGTGTTTTTATTTTACTTTTCAACATTACAAC‑GCTTTCAAAGTGTA‑TTTTTTA‑‑G‑G‑‑C‑TTGT‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAAT‑AAAAGTa                                                                                                                   <  1:5040340/128‑1 (MQ=255)

               tttCATTTAAAG‑CCATTTGTAAAAAAGCCTATGTTCTAGTCTTTTTATTATAATTATCAACATTACAAC‑GCTTTCAAAGTGTA‑TTTTTTA‑‑G‑T‑‑C‑TTG‑‑‑‑‑TTTTTTTTTTTTTTTTTTAAaaat‑aaaaataa                                                                                                                  >  1:389262/1‑128 (MQ=255)

                tttaTTTAAAGCCCATTTGAAAAAACCCTTATTTTTATTGTTTTTTATT‑TAAATATTAACAATAAAACTCCTTCCAACGGTTA‑TTTTTTG‑‑GCG‑‑T‑TTT‑‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAAT‑AAAAGTa                                                                                                                   <  1:555010/125‑1 (MQ=255)

                  taTTTAAAT‑CCATTTTTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAAC‑GCTTTCAAAGTGTA‑TTTTTTA‑‑G‑G‑‑C‑TTG‑‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAAT‑AAAAGTAAGAt                                                                                                               <  2:4427142/127‑1 (MQ=255)

                         aataatttttTAAAAAAG‑ATATTTTTTATGCTTTTTATTATAATTATTAAAATTTAAAA‑GCTTTTAAATTTTATTTTTTTT‑‑G‑G‑‑T‑TTT‑‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAAT‑AAAAGTAAGATTTGGAt                                                                                                         <  2:352110/122‑1 (MQ=255)

                         aG‑CCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAAC‑GCTTTCAAAGTGTA‑TTTTTTA‑‑G‑G‑‑C‑TTGTT‑‑‑TTTTTTTTTTTTTTTTTTAAAAAT‑AAAATTAAAATTTAGa                                                                                                          >  2:1792989/1‑128 (MQ=255)

                         aG‑CCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAAC‑GCTTTCAAAGTGTA‑TTTTTTA‑‑G‑G‑‑C‑TTG‑‑‑‑‑‑‑TTTTTTTTTTTTTTGTAAAAAT‑AAAAGTAAGATTTGGATCaa                                                                                                      <  1:4990621/128‑1 (MQ=255)

                          atcaaTTTTTAAAAAATACTATTTTTAAGGTTTTTTATTTTAATTATAAAAATTAAAAA‑TATTTAAAATTTTA‑TTTTTTT‑‑T‑G‑‑G‑TTGTT‑‑‑TTTTTTTTTTTTTTTTGTAAAAAT‑AAAAGTAAGATTTGGa                                                                                                          <  2:1969642/124‑1 (MQ=255)

                              aTTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAAC‑GCTTTCAAAGTGTA‑TTTTTTA‑‑G‑G‑‑C‑TTGT‑‑‑‑TTTTTTTTTTTTTTTTTTAAAAAT‑AAAATTAATATTTGGaaaaac                                                                                                     >  2:1671128/1‑123 (MQ=255)

                              aTTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAAC‑GCTTTCAAAGTGTA‑TTTTTTA‑‑G‑G‑‑C‑TTGT‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAAT‑AAAAGTAATATTTGTATCAAc                                                                                                     >  1:3382111/1‑128 (MQ=255)

                                gtGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAAC‑GCTTTCAAAGTGTA‑TTTTTTA‑‑G‑G‑‑C‑TTG‑‑‑‑‑TTTTTTTTTTTTTTTTTTAAAAAT‑AAAATTAATAtttttaaaaaaaaa                                                                                                  >  1:84121/2‑117 (MQ=255)

                                  ttAAAAAAACATATGTTTTAGTATTTTTATTATAAATAAAAACATTAAAAA‑GATTTCAAATTTTA‑TATTTTATTA‑T‑‑T‑TTT‑‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAAT‑AAAAGTAAGATTTGGATCAACCaa                                                                                                  <  1:665073/127‑1 (MQ=255)

                                    taaaaaTACTCTGTTCTATGAGTTTTAATAATTTTAATAAAATTAACAC‑GCTTTCAAAGTGTA‑TTTTTTA‑‑G‑G‑‑C‑TTGTT‑‑‑TTTTTTTTTTTTTTTTGTAAAAAT‑AAAAGTAAGATTTGGATCAACCaaaa                                                                                                <  1:4905081/127‑1 (MQ=255)

                                       aatgcatATGTTTTAGTTTTTTTATTTTTCTTTTATACATTAAAAC‑TCTTTCAAAGTGTA‑TTTTTTT‑‑G‑G‑‑T‑TTGTT‑‑‑TTTTTTTTTTTTTTTTGTAAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACta                                                                                             <  1:4228072/122‑1 (MQ=255)

                                           attATGTT‑TAGGCTTTTTTTAATACTTTTAAAAATTAAAAC‑GATTTAAAAGTGTA‑TTTTTTA‑‑G‑G‑‑C‑TTG‑‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATATCaaa                                                                                      <  1:2860283/126‑1 (MQ=255)

                                            cTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAAC‑GCTTTCAAAGTGTA‑TTTTTTA‑‑G‑G‑‑C‑TTGT‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAAT‑ATATTTATTATTTGGATCAACCAAAACtattaaaa                                                                                       >  1:4770920/1‑123 (MQ=255)

                                            cTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAAC‑GCTTTCAAAGTGTA‑TTTTTTA‑‑G‑G‑‑C‑TTGT‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAAT‑AAAATTAAGTTTTGGATCAACCAAAACTATATCaa                                                                                       >  1:5482290/1‑128 (MQ=255)

                                             ttttttCTATTCTTTTTATTATTATTATGAAAATTACAAA‑GCTTTTAACTTGTA‑TTTTTTT‑‑G‑G‑‑G‑TTGT‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATATCaaa                                                                                      <  2:1091842/124‑1 (MQ=255)

                                               ttttatatgatttttATTATACTTATCAAAATTAAAAC‑GGTTTAAAAGTGTT‑TTTTTTT‑‑T‑G‑‑C‑TTG‑‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATATCaaaaaa                                                                                   <  2:5156019/118‑1 (MQ=255)

                                                gTTCTAGGCTTTTTATTATACTTATCAACATTACAAC‑GCTTTCAAAGTGTA‑TTTTTTA‑‑G‑G‑‑C‑TTGT‑‑‑‑TTTTTTTTTTTTTTTTTTAAAAAT‑AAATGTAAAATTTTGTTAAACCAAAACtttttaataaaa                                                                                   >  1:2336107/1‑117 (MQ=255)

                                                gTTCTAGGCTTTTTATTATACTTATCAACATTACAAC‑GCTTTCAAAGTGTA‑TTTTTTA‑‑G‑G‑‑C‑TTGT‑‑‑‑TTTTTTTTTTTTTTTTTTAAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACAATATCaaaaaa                                                                                   >  1:1958854/1‑128 (MQ=255)

                                                gTTCTAGGCTTTTTATTATACTTATCAACATTACAAC‑GCTTTCAAAGTGTA‑TTTTTTA‑‑G‑G‑‑C‑TTG‑‑‑‑‑TTTTTTTTTTTTTTTT‑TAAAAAA‑AAAATTAAAATTTGGATAAACAAAAATAATaaaaaaaaaaa                                                                                 >  2:3855289/1‑127 (MQ=255)

                                                 ttCTAGGCTTTTTATTATACTTATCAACATTACAAC‑GCTTTCAAAGTGTA‑TTTTTTA‑‑G‑G‑‑C‑TTGTT‑‑‑TTTTTTTTTTTTTTTTGTAAAAAT‑AAAAGTAATTTTTGTATAAACAAAAACTATATCaaaaaa                                                                                   >  1:5311642/1‑128 (MQ=255)

                                                 ttCTAGGCTTTTTATTATACTTATCAACATTACAAC‑GCTTTCAAAGTGTA‑TTTTTTA‑‑G‑G‑‑C‑TTG‑‑‑‑‑TTTTTTTTTTTTTTTT‑TAAAAAT‑AAAAGTAAGATTTGGTTCAACCAAAACTATTACAAAAAAAtt                                                                                >  2:4976406/1‑128 (MQ=255)

                                                 acatAGGCTTTTTATTATACTTATCAACATTACAAC‑GCTTTCAAAGTGTA‑GTTTTTA‑‑G‑G‑‑C‑TTGTTT‑‑TTTTTTTTTTTTTTTTTTTAAAAT‑AAAAATAAGATTTGGATAAAACAAAAATAAATaaaaaa                                                                                    >  1:1618995/4‑128 (MQ=255)

                                                  ttttttttttttATTATAATTTTTTAAATTAAAAA‑TATTTAAATTTTTA‑TTTTTTA‑‑T‑G‑‑A‑TTGT‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAAt                                                                                 <  1:1273246/121‑1 (MQ=255)

                                                  tCTAGGCTTTTTATTATACTTATCAACATTACAAC‑GCTTTCAAAGTGTA‑TTTTTTA‑‑G‑G‑‑C‑TTGTT‑‑‑TTTTTTTTTTTTTTTTTTAAAAAT‑AAAATTAATATTTGAATAAAACAAAAATATaaaaaaaaaa                                                                                  >  1:3073971/1‑128 (MQ=255)

                                                  tCTAGGCTTTTTATTATACTTATCAACATTACAAC‑GCTTTCAAAGTGTA‑TTTTTTA‑‑G‑G‑‑C‑TTGT‑‑‑‑TTTTTTTTTTTTTTTTTTAAAAAA‑AAAATAAATATTTTGATAAAACAAAAATA‑ATaaaaaaaaat                                                                                >  1:3533035/1‑126 (MQ=255)

                                                   cTAGGCTTTTTATTATACTTATCAACATTACAAC‑GCTTTCAAAGTGTA‑TTTTTTA‑‑G‑G‑‑C‑TTGT‑‑‑‑TTTTTTTTTTTTTTTTTTAAAAAT‑AAAATTAAGATTTTGATAAACCAAAACTAAAAAAAAAAAAta                                                                                >  2:4181666/1‑127 (MQ=255)

                                                   atAGGCTTTTTATTATACTTATCAACATTACAAC‑GCTTTCAAAGTGTA‑TTTTTTA‑‑T‑G‑‑C‑TTG‑‑‑‑‑TTTTTTTTTTTTTTTT‑TAAAAAA‑AAAATAAAGATTTTTATAAACAAAAACGATATCAAAAAAAttta                                                                              >  2:4883050/2‑126 (MQ=255)

                                                    tAGGCTTTTTATTATACTTATCAACATTACAAC‑GCTTTCAAAGTGTA‑TTTTTTA‑‑G‑G‑‑C‑TTGT‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAAT‑AAAAGTAATATTTGGAGCAACCAAAACTTTATCAAAAAAATTa                                                                               >  1:1381221/1‑128 (MQ=255)

                                                    tAGGCTTTTTATTATACTTATCAACATTACAAC‑GCTTTCAAAGTGTA‑TTTTTTA‑‑G‑G‑‑C‑TTG‑‑‑‑‑TTTTTTTTTTTTTTTTTTTAAAAT‑AAAATTAAAATTTTTAAAAAACAAAAaaaaataaaaaaaataaa                                                                              >  2:5347312/1‑128 (MQ=255)

                                                    tAGGCTTTTTATTATACTTATCAACATTACAAC‑GCTATCAAAGTGTA‑TTTTTTA‑‑G‑G‑‑C‑TTGTTT‑‑TTTTTTTTTTTTTTTTTTAAAAAT‑AAAATTAATATTTGTATAACACAAAAATTTAAAAAAAAAAt                                                                                 >  1:119542/1‑128 (MQ=255)

                                                     aGGCTTTTTATTATACTTATCAACATTACAAC‑GCTTTCAAAGTGTA‑TTTTTTA‑‑G‑G‑‑C‑TTGT‑‑‑‑TTTTTTTTTTTTTTTTTTAAAAAT‑AAAATTAATTTTTATTAAAAAAAAAAATATTTAAAAAAAATTaa                                                                              >  1:926815/1‑128 (MQ=255)

                                                         tttttATTATAATTATAAAAATTACAAA‑TCTTTCAAATTGTT‑TTTTTTA‑‑T‑G‑‑CTTTT‑‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTaaaaaa                                                                          <  2:4569945/128‑1 (MQ=255)

                                                            ttattaTACTTATCAACATTACAAC‑GCTTTCAAAGTGTA‑TTTTTTA‑‑G‑G‑‑C‑TTG‑‑‑‑‑TTTTTTTTTTTTTTTTTTTAAAAA‑AAAATTAAATATTTGATAAACCAAAAAAAAATCAAAAAAATTaaaaaaaaaa                                                                      >  2:4525069/1‑126 (MQ=255)

                                                              tttatAATTTTAAAAATTAAAAC‑GCTTTTAAATTTTA‑TTTTTTT‑‑G‑G‑‑G‑TTT‑‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAAtagt                                                                    <  2:526561/127‑1 (MQ=255)

                                                                 ataCTTATCAACATTACAAC‑GCTTTCAAAGTGTA‑TTTTTTA‑‑G‑G‑‑C‑TTGTTT‑‑TTTTTTTTTTTTTTTTTTAAAAAT‑AAAATTAATATTTTGATAAACAAAAAGTATTAaaaaaaaataaaaaaaaatatt                                                                    >  1:3176297/1‑126 (MQ=255)

                                                                  taCTTATCAACATTACAAC‑GCTTTCAAAGTGTA‑TTTTTTA‑‑G‑G‑‑C‑TTGTTT‑‑TTTTTTTTTTTTTTTTTTAAAAAT‑AAAATTAAAATTTGTATAAACAAAAAAAATATAAAAAAAATTaaaaaaaaatttt                                                                   >  1:4375736/1‑123 (MQ=255)

                                                                  taCTTATCAACATTACAAC‑GCTTTCAAAGTGTA‑TTTTTTA‑‑G‑G‑‑C‑TTGTT‑‑‑TTTTTTTTTTTTTTTTGTAAAAAT‑AAAAGTAATATTTGGATAAACCAAAAATATATAAAAAAAATTAAAAAAAAtatttt                                                                  >  1:4830164/1‑128 (MQ=255)

                                                                   aCTTATCAACATTACAAC‑GCTTTCAAAGTGTA‑TTTTTTA‑‑G‑G‑‑C‑TTGT‑‑‑‑TTTTTTTTTTTTTTTTTTAAAAAT‑AAAAGTAATATTTTGATCAACCAAAAAATTTTAAAAAAAATTAAAAAAAAtattttat                                                                >  1:5422465/1‑127 (MQ=255)

                                                                      tATCAACATTACAAC‑GCTTTCAAAGTGTA‑TTTTTTA‑‑G‑G‑‑C‑TTGT‑‑‑‑TTTTTTTTTTTTTTTTTTAAAAAA‑AAAATTAAAATTTGGATAAAAAAAAAAATTAAAAAAAAAATT‑AAAAAAATATTTTATTTGa                                                            >  2:4002274/1‑128 (MQ=255)

                                                                      tATCAACATTACAAC‑GCTTTCAAAGTGTA‑TTTTTTA‑‑G‑G‑‑C‑TTG‑‑‑‑‑TTTTTTTTTTTTTTTTTTAAAAAT‑AAAAGTAAGATTTGGTTCAACCAAAAATATTTAAAAAAAATTAAAAAAAAtagtttatttta                                                            >  2:4679908/1‑126 (MQ=255)

                                                                       aTCAACATTACAAC‑GCTTTCAAAGTGTA‑TTTTTTA‑‑G‑G‑‑C‑TTGTT‑‑‑TTTTTTTTTTTTTTTTTTAAAAAT‑AAATTTAAGATTTGGTTAAACCAAAAATATATAAAAAAAATTAAAAAAAAtaatttatttt                                                             >  1:768163/1‑127 (MQ=255)

                                                                       aTCAACATTACAAC‑GCTTTCAAAGTGTA‑TTTTTTA‑‑G‑G‑‑C‑TTGT‑‑‑‑TTTTTTTTTTTTTTTTTTAAAAAA‑AAAAAAAATATTTGAAAAAACCAAAAAAAAATAAAAAAAATAAAAAAAAAaatttttattta                                                            >  2:1351548/1‑122 (MQ=255)

                                                                        tCAACATTACAAC‑GCTTTCAAAGTGTA‑TTTTTTA‑‑G‑G‑‑C‑TTGTTTTTTTTTTTTTTTTTTTTTTTAAAAAT‑AAAATTAATATTTTGATAAACCAAAACTTTATAAAAAAAATTAAAAAAAAtattttatt                                                               >  1:2420617/1‑126 (MQ=255)

                                                                           aCATTACAAC‑GCTTTCAAAGTGTA‑TTTTTTA‑‑G‑G‑‑C‑TTGTT‑‑‑TTTTTTTTTTTTTTTTTTAAAAAT‑AAAATTAAGATTTTGATAAACAAAAACTAAATAAAAAAAATTAAAAAAAAttttttattttattt                                                         >  1:2947162/1‑123 (MQ=255)

                                                                             aTTACAAC‑GCTTTCAAAGTGTA‑TTTTTTA‑‑G‑G‑‑C‑TTGTT‑‑‑TTTTTTTTTTTTTTTTTTAAAAAT‑AAAAGTAATATTTGTATAAAACAAAAAAATAAAAAAAAAATAAAAAAAAATATTTTATTTAAtttta                                                       >  2:813066/1‑127 (MQ=255)

                                                                              ttACAAC‑GCTTTCAAAGTGTA‑TTTTTTA‑‑G‑G‑‑C‑TTGT‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAAT‑AAAAGTAATATTTGTTTCAACAAAAAATTTATAAAAAAATTTAAAAAAAAAAGTTTTTTTGATTTTaaa                                                     >  1:5173839/1‑128 (MQ=255)

                                                                                 cAAC‑GCTTTCAAAGTGTA‑TTTTTTA‑‑G‑G‑‑C‑TTGTT‑‑‑TTTTTTTTTTTTTTTTTTAAAAAT‑AAAATTAAGTTTTTGATAAACCAAAACTATTAAAAAAAAATAAAAAAAAATATATTATTTTATTTTaaaaa                                                   >  1:3439050/1‑127 (MQ=255)

                                                                                   aC‑GCTTTCAAAGTGTA‑TTTTTTA‑‑G‑T‑‑C‑TTG‑‑‑‑‑TTTTTTTTTTTTTTTTTTTAAAATAAAAATTAAAATTTTGTAAAAACAAAAATAATAAAAAAAAATAAAAAAAAATATTTTTTTTTAGTTTAAAATATg                                                >  2:1433194/1‑128 (MQ=255)

                                                                                   aC‑GCTTTCAAAGTGTA‑TTTTTTA‑‑G‑G‑‑C‑TTGTT‑‑‑TTTTTTTTTTTTTTTTATAAAAAT‑AAAATTAACATTTGTTAAAACCAAAAATAAAAAAAAAAAATTAAAAAAAATAATTTATTTGATTTTaaaaaat                                                 >  2:3648929/1‑125 (MQ=255)

                                                                                   aC‑GCTTTCAAAGTGTA‑TTTTTTA‑‑G‑G‑‑C‑TTGT‑‑‑‑TTTTTTTTTTTTTTTTTTAAAAAA‑AAAATTAATATTTGGAACCACCAAAACAATATAAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTAAAAtagg                                                >  1:5128812/1‑125 (MQ=255)

                                                                                         ttCAAAGTGTA‑TTTTTTA‑‑G‑G‑‑C‑TTGTTT‑‑TTTTTTTTTTTTTTTTTTAAAAAA‑AAAATTAATTTTTTTTTAAACAAAAAAATAATAAAAAAAATTAAAAAAAATTTTTTATTTGATTTTaaaaaatgaat                                             >  2:5446168/1‑121 (MQ=255)

                                                                                         ttCAAAGTGTA‑TTTTTTA‑‑G‑G‑‑C‑TTGTTT‑‑TTTTTTTTTTTTTTTTGTAAAAAT‑AAAATTAATATTTTGATAAACAAAAACTATAAAAAAAAATTTAAAAAAAATATTTTATTTTTGTTAAAAATATGCat                                             >  2:2685648/1‑128 (MQ=255)

                                                                                         ttCAAAGTGTA‑TTTTTTA‑‑G‑G‑‑C‑TTGTT‑‑‑TTTTTTTTTTTTTTTTTTAAAAAA‑AAAATTAATATTTTGAAAAAACAAAAAAATTTAAAAAAAATTAAAAAAAATATTTTATTTTATTTTaaaaaattaata                                            >  1:4074684/1‑120 (MQ=255)

                                                                                         ttCAAAGTGTA‑TTTTTTA‑‑G‑G‑‑C‑TTGT‑‑‑‑TTTTTTTTTTTTTTTTTTAAAAAA‑AAAATTAAATTTTGGATAAACAAAAACTAAAAAAAAAAAATAAAAAAAAAAAGTTTAATTAAATTTaaaaatataaata                                           >  2:2936482/1‑119 (MQ=255)

                                                                                         ttCAAAGTGTA‑TTTTTTA‑‑G‑G‑‑C‑TTGT‑‑‑‑TTTTTTTTTTTTTTTTTTAAAAAA‑AAAATAAATATTTGAAAAAACAAAAAAAATTAAAAAAAAATAAAAAAAAAAATTTTAGTTATGTTTaaaaatggattat                                           >  2:2566942/1‑119 (MQ=255)

                                                                                          tCAAAGTGTA‑TTTTTTA‑‑G‑G‑‑C‑TTGTT‑‑‑TTTTTTTTTTTTTTTTTTAAAAAT‑AAAAGTAAGATTTTGAAAAACAAAAAAAAAAACAAAAAATATAAAAAAAAAAATTTATTTTTGTTTaaaagaacacaat                                           >  2:2097984/1‑119 (MQ=255)

                                                                                           taaaTTGTT‑TTTTTTA‑‑G‑G‑‑T‑TTGTT‑‑‑TTTTTTTTTTTTTTTTGTAAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCatata                                          <  2:4480962/127‑1 (MQ=255)

                                                                                           cAAAGTGTA‑TTTTTTA‑‑G‑G‑‑C‑TTGT‑‑‑‑TTTTTTTTTTTTTTTTGAAAAAAT‑AAAATTAAAATTTGGATAAACCAAAACTAAAAAAAAAAAAATAAAAAAAATTGTTTATTTTTGTTTCAAATATTTatatat                                         >  1:3643013/1‑128 (MQ=255)

                                                                                              tatttttttttttt‑‑t‑G‑‑C‑TTG‑‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAAT‑AATAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGt                                      <  1:623753/121‑1 (MQ=255)

                                                                                              attttA‑TTTTTTA‑‑G‑GTTT‑TTT‑‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAg                                       <  1:4438739/124‑1 (MQ=255)

                                                                                                tgtA‑TTTTTTA‑‑G‑G‑‑C‑TTGTTTT‑TTTTTTTTTTTTTTTTTTAAAAAT‑AAAATTAATATTTGGAAAAACCAAAAATTTATAAAAAAATTTAAAAAAAATATTTTTTTTGAGTTTAAAAAGAGCAtatatat                                       >  1:1106268/1‑127 (MQ=255)

                                                                                                tgtA‑TTTTTTA‑‑G‑G‑‑C‑TTGT‑‑‑‑TTTTTTTTTTTTTTTTGAAAAAAA‑AAAAGAAATAATTTGATAAAACAAAAAAAAAATAAAAAAATTAAAAAAAATATATTATATTAATTTAAAATATTCATATATAgata                                    >  1:1557611/1‑125 (MQ=255)

                                                                                                  tA‑TTTTTTA‑‑G‑G‑‑C‑TTGT‑‑‑‑TTTTTTTTTTTTTTTTTTAAAAAT‑AAAATTAAGATTTGGATAAAACAAAACTATATAATAAAAATTAAAAAAAATATTTTTTTTAATTTTCAAATATACATTTATATTACaa                                  >  1:3998657/1‑128 (MQ=255)

                                                                                                       ttttA‑‑G‑G‑‑C‑TTGTT‑‑‑TTTTTTTTTTTTTTTTTTAAAAAT‑AAAAGTAAGATTTGGATAAACCAAAAGTATTTAAAAAAAATTAAAAAAAATATTTATTTTTATTTTAAAATCTGCATATATATTAAAAAgg                               >  1:2544524/1‑128 (MQ=255)

                                                                                                          tA‑‑G‑G‑‑C‑TTG‑‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAAT‑AAAAGTAATATTTGGATAAACCAAAACTAATAAAAAAAAAATAAAAAAAATATTTTTGTTTATTTTAAAATATGAAAATATATTAAAAAGTAAttt                          >  2:339564/1‑128 (MQ=255)

                                                                                                             tatg‑‑C‑TTG‑‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTGCAAAGGAAttt                          <  2:4366323/125‑1 (MQ=255)

                                                                                                                     ttttttttttttttttttttttttGTAATAAT‑AAATGTAAGATTTTGATCAACCAAAAATATATAAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAttt                          <  1:1852986/120‑1 (MQ=255)

                                                                                                                      tttttttttttttttttttttttGTAAAAAT‑ATAAGTAAGATTTTGATCAATAAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTa                         <  2:2434131/121‑1 (MQ=255)

                                                                                                                      tttttttttttttttttttttttGTAAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTa                         <  1:4623074/121‑1 (MQ=255)

                                                                                                                        cttgtttttttttttttttttttAAAAAT‑AAAAGTAATATTTGGTTAAACCAAAACTATATAAAAAAAATTAAAAAAAATATTTTAGTTTAGTTTAAAATAGGCATATAAATTACAAAATAAttttat                       >  1:5234819/6‑125 (MQ=255)

                                                                                                                         ttttttttttttttttttttttAAAAAA‑AAAATTAATTTTTTTTTAAAAAAAAAATATTTAAAAAAAATTAAAAAAAATATTTTTTTTTATTTTAAAAAATAAATATATATTAAAAATAATTTTAtta                      >  1:536210/5‑126 (MQ=255)

                                                                                                                         ttgtttttttttttttttttGTAAAAAT‑AAAATTAAAATTTGGATAAACAAAAAAATTTAAAAAAAAATTAAAAAAAATTGTTTATTTTAATTTAAAAAATGAATTTATATTAAAAATGAATTTATGa                      >  2:1873568/5‑128 (MQ=255)

                                                                                                                          gttttttttttttttttttttAAAAAA‑AAAATTAATATTTGGTTAAACAAAAAATATAAAAAAAAAATTAAAAAAAAATTTTAAATTGATTTTTAAAAATGCATTTATATTAAAAAGtaattaatttt                     >  2:2838396/4‑125 (MQ=255)

                                                                                                                           gtttttttttttttttttttAAAAAT‑AAAATTAAAATTTGTATAAACAAAAAAAAAAAAAAAAAAATTAAAAAAAAAATTTTATTTAAGTTTAAAAAAAGAAAATAAAGTAAAAAAAAATTTAtaaaa                    >  2:552802/3‑124 (MQ=255)

                                                                                                                               ttttttttttttttGTAAAAAT‑AAAAGTAAGATTTGGATAAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaa                <  2:5067897/128‑1 (MQ=255)

                                                                                                                                  tttttttttttGTAATAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaaa             <  2:1190257/128‑1 (MQ=255)

                                                                                                                                   ttttttttttGTAAAAAT‑AAAAGTAATATTTTGATCAAACAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGtaaaaaa            <  1:3790829/128‑1 (MQ=255)

                                                                                                                                   ttttttttttGTAAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaaaa            <  1:1005500/128‑1 (MQ=255)

                                                                                                                                     ttttttttttAAAAAA‑AAAAGAAAAATTTGGAAAAACCAAAACAATAAAAAAAAAATTAAAAAAAATATTTTAATTTAGTTTCAAATATGCATATATATTAAAAATGAATTTATTATATAAAAAAAtt          >  2:4745316/1‑127 (MQ=255)

                                                                                                                                        tttttGTATATTT‑AATAGTATGTTTTGGATCAACCAAAACTATATCTAAAAAATTAAAAAATATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGAt       <  2:1562826/128‑1 (MQ=255)

                                                                                                                                          tttGTAAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTa     <  2:1288554/128‑1 (MQ=255)

                                                                                                                                           ttGTAAAAAT‑AAAAGTAAGATTTTGATCAAAAAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAg    <  1:2132114/128‑1 (MQ=255)

                                                                                                                                             gTAAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTatca  <  1:1331444/128‑4 (MQ=255)

AAAAAAATAAAAATTTTTCATTTAAAG‑CCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAAC‑GCTTTCAAAGTGTA‑TTTTTTA‑‑G‑G‑‑C‑TTG‑‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTT  >  CP016816/203785‑204039

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`