Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816203,9520CA34.6% 1926.5 / 260.9 1230intergenic (+336/+122)JCVSYN2_00845/JCVSYN2_00850lipoprotein/inorganic diphosphatase
Reads supporting (aligned to +/- strand):  ref base C (336/438);  new base A (304/105);  total (649/581)
Fisher's exact test for biased strand distribution p-value = 7.98e-25
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 1285 total aligned reads displayed.

AAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑C‑TTG‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGG‑ATCAACCAAAACTATA‑TCAAAAAAATTAAAAA‑AAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTAAATTATTAAGC  >  CP016816/203823‑204079
                                                                                                                                         |                                                                                                                                
      ttttttCTATTCTTTTTATTATTATTATGAAAATTACAAAGCTTTTAACTTGTATTTTTTTGG‑G‑TTGT‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGG‑ATCAACCAAAACTATA‑TCaaa                                                                                                                               <  2:1091842/124‑1 (MQ=255)
         gTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑C‑TTG‑‑‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAATTAATATTTGT‑AACAACCAAAAATTTT‑Taaaaaaaa                                                                                                                           >  1:2556601/1‑128 (MQ=255)
         aacatAGGCTTTTTTTTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑C‑TTGTTTTTTTTTTTTTTTTTTTTTTAAAAATAAAAGAAAGATTAGG‑ATCAACAAAAATTATA‑Taaaa                                                                                                                               >  1:4334866/5‑128 (MQ=255)
            cTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑C‑TTG‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGG‑ATAAACCAAAACTAAT‑AAAAAAAAATTa                                                                                                                        >  2:5081587/1‑128 (MQ=255)
              aGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑C‑TTGT‑‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAATTAATTTTTAT‑TAAAAAAAAAAATATT‑TAAAAAAAATTaa                                                                                                                       >  1:926815/1‑128 (MQ=255)
               ggCTTTTTATTATACTTATCAACATTACAACGCTTTCAAATTGTATTTTTTAGG‑C‑TTG‑‑‑‑TTTTTTTTTTTTTTTTTTTAAAATAAAAATTAATTTTGGTATAAACCATAAAAATA‑T‑AAAAAAATTaaaa                                                                                                                     >  2:3806702/1‑128 (MQ=255)
                   ttttATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑C‑TTG‑‑‑‑TTTTTTTTTTTTTT‑‑‑TAAAAATAAAAGTAAGATTTGT‑ATCAACCAAAACTATA‑TAAAAAAAATTAAAAA‑AAAtat                                                                                                             >  1:546606/1‑127 (MQ=255)
                          ataCTTATCAACATTACAACGCTTTCAAAGTGTAGTTTTTAGG‑C‑TTGT‑‑‑TTTTTTTTTTTTTTTTTTAAAAAAAAAAGTAACATTTGT‑ATCAAACCAAACATTA‑AAAAAAAAATTAAAAA‑AATaagttt                                                                                                          >  1:3751080/1‑128 (MQ=255)
                           taCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑C‑TTGTT‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAATTAATATTTTT‑ATAAAACAAAAATATT‑TAAAAAAAATTAAAAA‑AAAtatttt                                                                                                          >  1:1685719/1‑128 (MQ=255)
                           taCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑C‑TTGT‑‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAATTAATATTTGT‑ATCAACCAAAACTATA‑TCAAAAAAATTAAAAA‑AAAtaatttt                                                                                                         >  2:4579537/1‑127 (MQ=255)
                           aaattATAAACATAACAACGCTTTCAAAGTGTATTTTTTAGG‑G‑TTG‑‑‑‑‑TTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGG‑ATCAACCAAAACTATA‑TCAAAAAAATTAAAAA‑AAAtagtttagt                                                                                                       <  2:5394406/125‑1 (MQ=255)
                            aCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑C‑TTG‑‑‑‑TTTTTTTTTTTTTTTT‑AAAAAATAAAATTAAGATTTGG‑ATAAACCAAAACTATA‑TAAAAAAAATAAAAAA‑AAAtattttagtt                                                                                                      >  1:4151435/1‑128 (MQ=255)
                               tttaataaTTAAAACGATTTAAAAGTTTATTTTTTAGG‑C‑TTG‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGG‑ATCAACCAAAACTATA‑TCAAAAAAATTAAAAA‑AAATAGTTTAGTTGa                                                                                                    <  1:1377108/121‑1 (MQ=255)
                               tATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑C‑TTGT‑‑‑TTTTTTTTTTTTTTTTTTAAAAAAAAAATTAAAATTTGG‑ATAAAAAAAAAAATTA‑AAAAAAAAATT‑AAAA‑AAATATTTTATTTGa                                                                                                    >  2:4002274/1‑128 (MQ=255)
                                ttCAACATTTCAACGTTTTTAATTTTTTTTTTTTATG‑CTTTT‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGG‑ATCAACCAAAACTATA‑TCAAAAAAATTAAAAA‑AAATAGTTTAGTTGa                                                                                                    <  2:5310257/127‑1 (MQ=255)
                                aTCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑C‑TTGTT‑‑TTTTTTTTTTTTTTTTGTAAAATTAAAATTAATATTTTG‑ATAAACCAAAACATTA‑TCAAAAAAATTAAAAA‑AAATATTTTATTTg                                                                                                     >  2:184972/1‑128 (MQ=255)
                                aTCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑C‑TTGT‑‑‑TTTTTTTTTTTTTTTTTTAAAAAAAAAAAAAATATTTGA‑AAAAACCAAAAAAAAA‑TAAAAAAAATAAAAAA‑AAAaatttttattta                                                                                                    >  2:1351548/1‑122 (MQ=255)
                                aTCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑C‑TTG‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAATTAAGATTTTG‑ATAAACCAAAAATATA‑TAAAAAAAATTAAAAA‑AAATATTTTAGTTGaa                                                                                                   >  1:763821/1‑127 (MQ=255)
                                 tCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑C‑TTGT‑‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAATTAAAATTTGT‑ATAAACCAAAACTATA‑ACAAAAAAAATAAAAA‑AAAtattttatttttt                                                                                                   >  2:2797227/1‑125 (MQ=255)
                                 tCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑C‑TTGT‑‑‑TTTTTTTTTTTTTTTTTTAAAAAAAAAATTAAAATTTTG‑ATAAACCAAAA‑AATATTAAAAAAAAATAAAAA‑AAAaatttttttttag                                                                                                   >  1:520407/1‑121 (MQ=255)
                                  cAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑C‑TTGT‑‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAATTAATATTTTG‑ATCAACCAAAAATATA‑TAAAAAAAATTAAAAA‑AAATATTTTATTTTAGt                                                                                                  >  1:4631535/1‑128 (MQ=255)
                                  cAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑C‑TTG‑‑‑‑‑TTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGG‑ATAAACCAAAAATATA‑TAAAAAAAATTAAAAA‑AAATAGTTTAGTTGAtttt                                                                                                >  1:3383582/1‑128 (MQ=255)
                                    aCATTACAACGCTTTCAAAGTGTATTTTTTAGG‑C‑TTGTT‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAATTAAGATTTTG‑ATAAACAAAAACTAAA‑TAAAAAAAATTAAAAA‑AAAttttttattttattt                                                                                                 >  1:2947162/1‑123 (MQ=255)
                                     aaTTACAACGATTTAAAAGTGTATTTTTTAGG‑C‑TTG‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGG‑ATCAACCAAAACTATA‑TCAAAAAAATTAAAAA‑AAATAGTTTAGTTGAGTTTCa                                                                                              <  2:4190903/127‑1 (MQ=255)
                                       tttaaactttttAAAATTTTATTTTTTTGGTT‑TTT‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGG‑ATCAACCAAAACTATA‑TCAAAAAAATTAAAAA‑AAATAGTTTAGTTGAGTTTCaa                                                                                             <  1:5046190/119‑1 (MQ=255)
                                       ttACAACGCTTTCAAAGTGTATTTTTTAGG‑C‑TTG‑‑‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAATTAATATTTTG‑ATAAACCAAAAATTTT‑TAAAAAAAATTAAAAA‑AAATATTTTATTTTAGTTTaaaa                                                                                            >  1:1879799/1‑128 (MQ=255)
                                            aCGCTTTCAAAGTGTATTTTTTAGG‑C‑TTGT‑‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAATTAATATTTGT‑ATCAAACAAAAATATA‑TAAAAAAAATTAAAAA‑AAATAGTTTATTTTATTTTAAAATATg                                                                                        >  1:422656/1‑128 (MQ=255)
                                            aCGCTTTCAAAGTGTATTTTTTAGG‑C‑TTGT‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAATTTAAATTTGT‑AAAAACCAAAACTATA‑TAAAAAAAATTAAAAA‑AAAAATTTAAGTTGAGttaaaaaacta                                                                                        >  1:4858682/1‑119 (MQ=255)
                                            aCGCTTTCAAAGTGTATTTTTTAGG‑C‑TTGT‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAATTAATATTTGT‑ATAAACCAAAACAATA‑TAAAAAAAATTAAAAA‑AAATAGTTTATTTGATTTTAAAATATg                                                                                        >  1:2651798/1‑128 (MQ=255)
                                              gCTTTCAAAGTGTATTTTTTAGG‑C‑TTGTTT‑TTTTTTTTTTTTTTTTTTAAAAATAAAAGTAATTTTTGG‑ATACACCAAAAAATTA‑ACAAAAAAAATAAAAA‑AAAAAATTTATTTGAGTTTCaaaaaag                                                                                        >  2:289884/1‑124 (MQ=255)
                                              gCTTTCAAAGTGTATTTTTTAGG‑C‑TTG‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAAAAAAATTAATATTTTG‑TAAAACCAAAAAAATT‑TAAAAAAAATTAAAAA‑AAATATTTTATTTTATTTTAAAAtattaaa                                                                                     >  1:5324814/1‑122 (MQ=255)
                                              gCTTTCAAAGTGTATTTTTTAGG‑C‑TTG‑‑‑‑‑TTTTTTTTTTTTTTTGTAAAAATAAAATTAAGATTTTG‑AACAACCAAAAATAAA‑TAAAAAAAATTAAAAA‑AAAAAATATATTTGATTTTAAAATCttaaaa                                                                                    >  2:588421/1‑123 (MQ=255)
                                               cTTTCAAAGTGTATTTTTTAGG‑C‑TTGT‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAATATTTGG‑ATAAACCAAAAATATA‑ACAAAAAAATTAAAAA‑AAATAGTTTATTTGATTTTCAAAAGTGCat                                                                                     >  1:5140125/1‑128 (MQ=255)
                                                 ttCAAAGTGTATTTTTTAGG‑C‑TTGTT‑‑TTTTTTTTTTTTTTTTTTAAAAAAAAAATTAATATTTTG‑AAAAAACAAAAAAATT‑TAAAAAAAATTAAAAA‑AAATATTTTATTTTATTTTaaaaaattaata                                                                                    >  1:4074684/1‑120 (MQ=255)
                                                 ttCAAAGTGTATTTTTTAGG‑C‑TTGT‑‑‑TTTTTTTTTTTTTTTTTTTAAAAAAAAATTAAATATTGG‑ATCAACCAAAAATAAA‑TAAAAAAAATAAAAAA‑AAAATTTTTTTTTGAGTTTaaattatgaaata                                                                                   >  2:487186/1‑118 (MQ=255)
                                                  tCAAAGTGTATTTTTTAGG‑C‑TTGT‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAATTAATATTTTG‑ATAAACAAAAAATATA‑TAAAAAAAATTAAAAA‑AAATATTTTATTTTATTTTAAAATATACattaa                                                                                  >  1:825319/1‑125 (MQ=255)
                                                  tCAAAGTGTATTTTTTAGG‑C‑TTG‑‑‑‑‑TTTTTTTTTTTTTTTGTAAAAAAAAAAGTATAATTTTG‑ATAAACCAAAAATTTT‑TAAAAAAAATTAAAAA‑AAATTATTAATTTAAGTTTCAAAtgttaattttta                                                                                >  1:2832322/1‑117 (MQ=255)
                                                     tatttttttttttttG‑C‑TTG‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAATAGTAAGATTTGG‑ATCAACCAAAACTATA‑TCAAAAAAATTAAAAA‑AAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGt                                                                              <  1:623753/121‑1 (MQ=255)
                                                          tATTTTTTAGG‑C‑TTGT‑‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAATTAAGATTTGG‑ATAAAACAAAACTATA‑TAATAAAAATTAAAAA‑AAATATTTTTTTTAATTTTCAAATATACATTTATATTACaa                                                                          >  1:3998657/1‑128 (MQ=255)
                                                                 tAGG‑C‑TTG‑‑‑‑TTTTTTTTTTTTTTTTTTAAAAATAAAAGTAAGATTTGG‑ATAAACCAAAACTATA‑TAAAAAAAATTAAAAA‑AAATATTTTAGTTGAGTTTCAAATATGCATATATAGTAAAAAGTAAttt                                                                  >  1:564504/1‑128 (MQ=255)
                                                                 tAGG‑C‑TTG‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGG‑ATAAACCAAAACTATA‑TCAAAAAAAATAAAAA‑AAATAATTTATTTTAGTTTAAAAAATACAAATATAATACAAAGTAAtta                                                                  >  2:1431463/1‑127 (MQ=255)
                                                                  aGG‑C‑TTGT‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAATTAATTTTTGG‑ATCAACCAAAAATAAT‑TCAAAAAAATAAAAAA‑AAATAGTTTAGTTTCTTTTCAAATATTAATATATATTAAAAAGGAAatt                                                                  >  1:1577125/1‑128 (MQ=255)
                                                                       ttttttttttttttttttttttttGTAAAAATAATAGTAAGATTTGG‑ATCAACCAAAACTATA‑TAAAAAAAATTAAAAA‑AAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAttt                                                                  <  2:1269976/120‑1 (MQ=255)
                                                                       ttttttttttttttttttttttttGTAAAAATAAAAGTAAGATTTGG‑ATCAACCAAAAATATA‑TCAAAAAAATTAAAAA‑AAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAttt                                                                  <  1:1476044/120‑1 (MQ=255)
                                                                       ttgtttttttttttttttttttttGTATAAATAATAGTAAGATTTTG‑ATAAAATAAAACTATA‑TCAAAATAATTAAAAA‑TAATAGTTTAGTTGAGTTTAAAATCTGCATATAT‑‑TACAAAGGAATTTAt                                                                <  1:198410/120‑1 (MQ=255)
                                                                       tatgttttgtttttttttttttttGTAAAAATAAAATTATGATTTGG‑ATAAAACAAAACTATA‑TCAAATAAATTAAAAA‑AAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAttt                                                                  <  2:3526179/119‑1 (MQ=255)
                                                                         ttttttttttttttttttttttGTATAAATAAAAGTAAGATTTGG‑ATCAACCAAAACTATA‑TCAAAAAAATTAAATA‑AAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTAt                                                                <  2:2039474/122‑1 (MQ=255)
                                                                          tttttttttttttttttttttGTAAAAATAAAAGTAAGATTTGG‑ATCAACCAAAACTATA‑TCAAAAAAATTAAAAA‑AAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATg                                                               <  2:1685719/123‑1 (MQ=255)
                                                                          cttgtttttttttttttttttttAAAAATAAAAGTAAGTTTTGG‑ATAAACCAAAAATATA‑TAAAAAAAATTAAAAA‑AAATAGTTTATTTTAGTTTAAAATAGGAATATATATTAAAAAGGAATTTTTg                                                               >  1:5253832/6‑128 (MQ=255)
                                                                            tttttttttttttttttttGTAAATATAAAAGTTAGATTTTG‑ATAAAAAAAATCTATA‑TCAAAAAAATTAAAAA‑AAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGAt                                                             <  2:1191230/125‑1 (MQ=255)
                                                                              ttgtttttttattttttGTAAAAATAAAAGTAAGATTTGG‑ATCAACCAAAACTATA‑TCAAAAAACTT‑AAAA‑AACTAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATaaa                                                          <  2:2311491/125‑3 (MQ=255)
                                                                                   ttttttttttttGTAAAAATAAAAGTAAGATTTGG‑ATAAAAAAAATCTATA‑TAAAAAAAATTAAAAA‑AAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaa                                                      <  1:672807/128‑1 (MQ=255)
                                                                                    tttttttttttGTAAAAATAAAAGTATGATTTGG‑ATCAAACAAAAATATA‑TCAAAAAAATTAAAAA‑AAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaaa                                                     <  1:4706133/128‑1 (MQ=255)
                                                                                     ttttttttttGTAAAAATAAAAGTAAGATTTGG‑ATCAACCAAAACTATA‑TCAAAAAAATTAAAAA‑AAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaaaa                                                    <  1:1005500/128‑1 (MQ=255)
                                                                                     ttttttttttGTAAAAATAAAAGTAAGATTTGG‑ATAAACAAAAACTATA‑TCAAAAAAATTAAAAA‑AAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaataaaa                                                    <  2:445754/128‑1 (MQ=255)
                                                                                        tttttttGTAAAAATAAAAGTAAGATTTTG‑ATCAATAAAATCTATA‑TAAAAAAAATTAAAAA‑AAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATgg                                                 <  1:1317015/128‑1 (MQ=255)
                                                                                         ttttttGTAAAAATAAAAGTAAGATTTGG‑ATCAACCAAAACTATA‑TCAAAAAAATTAAAAA‑AAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGa                                                <  1:4403691/128‑1 (MQ=255)
                                                                                            tttgttttaataatAGTAAGATTTGG‑ATAAAAAAAAAATATA‑TTAAAAAAATTAAAAA‑AAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTa                                             <  2:2138414/120‑1 (MQ=255)
                                                                                             ttttAAAAATAATAGTAAGATTTTG‑ATAAAAAAAAACTATA‑TCAAAAAAATTAAAAA‑AAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTat                                            <  2:2556601/125‑2 (MQ=255)
                                                                                             ttGTAATTATAAAATTAATATTTTG‑ATTAATCAAAATTATA‑TCAAAAAAATTATAAA‑AAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTat                                            <  2:2651798/128‑2 (MQ=255)
                                                                                             ttGTAAAAATAAAAGTAAGATTTTG‑ATCAACAAAAACTATA‑TCAAAAAAATTAAAAA‑AAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAg                                            <  1:3176261/128‑1 (MQ=255)
                                                                                               gTAAAAATAAAAGTAAGATTTGG‑ATCAACCAAAACTATA‑TCAAAAAAATTAAAAA‑AAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGtt                                          <  2:5205913/128‑1 (MQ=255)
                                                                                                 attaaTATAAGTAATATTTTT‑ATTAATTAAAAATATA‑TAGTAAAATTTAAAAATTAATAGTTTAGTTGAGTTTAAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTg                                         <  2:3891730/125‑1 (MQ=255)
                                                                                                  aaaaTAAAAGTAAGATTTGG‑ATAAACCAAAACTATA‑TCAAAAAAATTAAAAA‑AAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGAt                                       <  1:5400579/128‑1 (MQ=255)
                                                                                                    aaTATAAGTAAGATTTGG‑ATCAACCAAAACTATA‑TCAAAAAAATTAAAAA‑AAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTatcaactaa                                     <  2:687358/128‑9 (MQ=255)
                                                                                                      tAAAAGTAAGATTTGG‑ATCAACCAAAACTATA‑TCAAAAAAATTAAAAA‑AAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATc                                   <  1:4474311/128‑1 (MQ=255)
                                                                                                       aaaaGTAAGATTTGG‑ATCAACCAAAACTATA‑TCAAAAAAATTAAAAA‑AAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATcc                                  <  1:3627132/128‑1 (MQ=255)
                                                                                                       aaaaGTAAGATTTGG‑ATCAACCAAAACTATA‑TCAAAAAAATTAAAAA‑AAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATcc                                  <  2:4382154/128‑1 (MQ=255)
                                                                                                        aaaGTAAGATTTTG‑ATAAAACAAAAATATA‑TAAAAAAAATTAAAAA‑AAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCa                                 <  2:5005532/128‑1 (MQ=255)
                                                                                                        aaaGTAAGATTTGG‑ATCAACCAAAACTATA‑TCAAAAAAATTAAAAA‑AAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTAGATACTCCa                                 >  2:4240314/1‑128 (MQ=255)
                                                                                                         aaGTAAGATTTTT‑ATAAACAAAAAATATA‑TCAAAAAAATTAAAAA‑AAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAt                                <  1:1237494/128‑1 (MQ=255)
                                                                                                         aaGTAAGATTTGG‑ATCAACCAAAACTATA‑TCAAAAAAATTAAAAA‑AAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAt                                >  2:1784719/1‑128 (MQ=255)
                                                                                                            tatgATTTGG‑ATAAATCAAAAATATA‑TCAAAAAAATTAAAAA‑TATTAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAtttt                             <  2:3022636/125‑1 (MQ=255)
                                                                                                            tAAGATTTGG‑ATCAACCAAAACTATA‑TCAAAAAAATTAAAAA‑AAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAtttt                             >  1:2459059/1‑128 (MQ=255)
                                                                                                              aGATTTGG‑ATCAACCAAAACTATA‑TCAAAAAAATTAAAAA‑AAATAGTTTTGTTGAGTTTCAAATCTGCATATATAGTACAATGGATTTTATGATAGAAAAAAATGGATTAGTTGATATGACAtttttt                           >  1:4547269/1‑128 (MQ=255)
                                                                                                              aGATTTGG‑ATCAACCAAAACTATA‑TCAAAAAAATTAAAAA‑AAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTAt                                                                <  2:4795654/91‑1 (MQ=255)
                                                                                                              aGATTTGG‑ATCAACCAAAACTATA‑TCAAAAAAATTAAAAA‑AAATAGTATAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTAt                                                                >  1:4795654/1‑91 (MQ=255)
                                                                                                              aGATTTGG‑ATAAAAAAAAACTATA‑TAAAAAATATTAAAAA‑AAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAtttttt                           <  1:49889/128‑1 (MQ=255)
                                                                                                               gATTTGG‑ATCAACCAAAACTATA‑TCAAAAAAATTAAAAA‑AAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTa                          >  1:3864798/1‑128 (MQ=255)
                                                                                                                 tttGT‑ATAAAACAAAACTTTA‑TCAAAAAAATTAAAAA‑AAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAAt                        <  2:1903766/128‑1 (MQ=255)
                                                                                                                 tttGG‑ATCAAACAATACTATA‑TTAAAAAAATTAAAAA‑ATATTGTTTAGTTGAGTTTCAAATGTGAATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAAt                        <  1:3105998/128‑1 (MQ=255)
                                                                                                                 tttGG‑ATAAACAAAAACTATA‑TCAAAAAAATTAAAAA‑AAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAAt                        <  2:4134245/128‑1 (MQ=255)
                                                                                                                   tGG‑ATCAACCAAAACTATA‑TCAAAAAAATTAAAAA‑AAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATTATAGAAAAAAATGGATTAGTTTATAATCCATTTTTTAAttt                      >  1:3467366/1‑128 (MQ=255)
                                                                                                                        tCAACCAAAACTATA‑TCAAAAAAATTAAAAA‑AAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGTATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGtt                  >  2:5236296/1‑128 (MQ=255)
                                                                                                                         caaataaaaATTTA‑TAAAAAATATTAAAAT‑AAATTGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGttt                 <  2:1544790/123‑1 (MQ=255)
                                                                                                                          aaCCAAAACTATA‑TCAAAAAAATTAAAAA‑AAATAGTTTAGTTGAGTTTCAAATCTGCAGATATAGTACAACGGAATTTATGATAGAAAAAAATGGATTAGTTGAGAATCCATGTTTTAATTTTGTtta                >  1:2397015/1‑128 (MQ=255)
                                                                                                                           aCCAAAACTATA‑TCAAAAAAATTAAAAA‑AAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTttat               >  1:1110369/1‑128 (MQ=255)
                                                                                                                           aCCAAAACTATA‑TCAAAAAAATTAAAAA‑AAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTATAATTATGTttat               >  2:857479/1‑128 (MQ=255)
                                                                                                                            ccAAAACTATA‑TCAAAAAAATTAAAAA‑AAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTttatt              <  2:5483418/128‑1 (MQ=255)
                                                                                                                            ataaatCTATA‑TTAAATAAATTTATAT‑TATTATTTTAGTTGAGTTTAAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTttatt              <  2:2438673/126‑1 (MQ=255)
                                                                                                                              taaaCTATA‑TAAAAATTATTAAAAA‑AAATAGTTTAGTTGAGTTTAATATCTTCATATATAGTACAAATGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTaa            <  1:2272807/127‑1 (MQ=255)
                                                                                                                              aataCTTTA‑TTAAATAATTTAAAAA‑AAATAGTTTAGTTGAGTTTATAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTaa            <  2:3419635/125‑1 (MQ=255)
                                                                                                                              aaaaCTATA‑TCAAAAATATTAAAAA‑AAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGTAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTaa            <  2:4511520/128‑1 (MQ=255)
                                                                                                                               aaaCTTTA‑TCAAAAAAATTAAAAA‑AAATAGGTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTaaa           <  2:4937486/128‑1 (MQ=255)
                                                                                                                                aaCTATA‑TCAAAAAAATTAAAAA‑AAATAGTTTAGTTGAGTTTCAAATCTGGATATATAGTACAAAGGAATTTATGATTGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATATTGTTTATTAAat          >  2:4701363/1‑128 (MQ=255)
                                                                                                                                     ta‑tCAAAAAAATTAAAAA‑AAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGTAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTAAAttatta     >  1:3551668/1‑128 (MQ=255)
                                                                                                                                     ta‑tCAAAAAAATTAAAAA‑AAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTatcaactaa                                     >  1:2135170/1‑88 (MQ=255)
                                                                                                                                     aattCAAAAAAATTAAAAA‑AAATAGTTTAGTTGAGTTTCAATTCTGCATATATAGAACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTAAattatt      <  2:3642586/125‑1 (MQ=255)
                                                                                                                                        tCAAAAAAATTAAAAA‑AAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAAtttt                     >  2:3110982/1‑110 (MQ=255)
                                                                                                                                         cAAAAAAATTAAAAA‑AAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTaaa           >  2:3237533/1‑119 (MQ=255)
                                                                                                                                         |                                                                                                                                
AAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑C‑TTG‑‑‑‑TTTTTTTTTTTTTTTTGTAAAAATAAAAGTAAGATTTGG‑ATCAACCAAAACTATA‑TCAAAAAAATTAAAAA‑AAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTAAATTATTAAGC  >  CP016816/203823‑204079

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑