New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP016816 = 349441262 (0.680)469 (0.260)
+TAA		 78/244 27.6 27.6% intergenic (+48/+118) JCVSYN2_00105/JCVSYN2_00110 ABC transporter permease/cell division protein FtsH
?CP016816 34945 = 1262 (0.680)intergenic (+49/+117) JCVSYN2_00105/JCVSYN2_00110 ABC transporter permease/cell division protein FtsH
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 1659 total aligned reads displayed.

TCTTTACTTCTTTATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑A‑C‑TA‑TT‑‑G‑‑‑AAAAAA‑A‑AAAAAAAATAA‑TA‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATT‑CAGGAGT‑AAAT‑TTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTATATTATTATTTGT  >  CP016816/34817‑35069
                                                                                                                                   |                                                                                                                                          
   ttACTTCTTTATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑A‑C‑TA‑TT‑‑G‑‑‑aa                                                                                                                                    >  1:1002043/1‑128 (MQ=255)
         cttTATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAAACAAATACATTGTGTTTGGTTTTTTTATTT‑A‑C‑TA‑TT‑‑G‑‑‑aaaaaa‑a‑a                                                                                                                            >  1:3862729/1‑128 (MQ=255)
            tATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGATTTTTTATTT‑A‑C‑TA‑TA‑‑G‑‑‑aaaaaa‑a‑aaaa                                                                                                                         >  1:2807742/1‑128 (MQ=255)
             aTGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATGATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑A‑C‑TA‑TT‑‑G‑‑‑aaaaaa‑a‑aaaaa                                                                                                                        >  1:3182009/1‑128 (MQ=255)
             aTGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑A‑C‑TA‑TT‑‑G‑‑‑aaaaaa‑a‑aaaaa                                                                                                                        >  1:3518592/1‑128 (MQ=255)
               ttcctttataaaaaaTAGTAATAAATTCTTAACCAATTAAAATTCTAAGTTAAGTTTATTAATAATAAAATATTAAACAAAATAAATTGTGTTTGGTTTTTTTATTT‑A‑A‑TA‑TT‑‑T‑‑‑aaaaaa‑a‑aaaaaaa                                                                                                                      <  2:460239/118‑1 (MQ=255)
                tgTTTCAAAAAAAACTTTAATAAATGATTAACCTATTAAAATCGTAATTTAATTTGATTAAAAAAAAAATTTTAAACAAAAAAAATTTTGTTTGGTTTTTTTATTT‑A‑A‑TA‑TT‑‑T‑‑‑aaaaaa‑a‑aaaaaaaa                                                                                                                     <  2:289792/127‑1 (MQ=255)
                   ttCAACAAAAAGAGTAATAAATGCTTAACCAAGTACAATGCTAAGGTTAGTTGATGAATAATAAAAGTTTAACCCAAATAATTTGTGTTTGGTTTTTTTATTT‑A‑C‑TA‑TT‑‑C‑‑‑aaaaaa‑a‑aaaaaaaaata                                                                                                                  <  2:2262788/128‑4 (MQ=255)
                        caaAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATCAAACCAAATACATTTAGTTTGGTTTTATTATAT‑A‑C‑TA‑TT‑‑GA‑‑AAAAAA‑A‑AAAAAAAataa‑ta‑‑ta                                                                                                           >  2:1143749/1‑128 (MQ=255)
                         aaaaaGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTTGTTTTTTTATTT‑A‑C‑TA‑TT‑‑G‑‑‑‑AAAAA‑A‑AAAAAAAATAA‑TA‑‑TAAtt                                                                                                        >  1:1981260/1‑128 (MQ=255)
                             agagTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑A‑A‑TA‑TT‑‑G‑‑‑AAAAAA‑A‑AAAAAAaa‑aa‑ta‑‑taaaatttg                                                                                                    >  1:1904593/1‑122 (MQ=255)
                              gagTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑A‑C‑TA‑TT‑‑GAA‑AAAAAA‑A‑AAAAAAAATAA‑TA‑‑TAATTTg                                                                                                      >  1:3315356/1‑128 (MQ=255)
                                gTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑A‑C‑TA‑TT‑‑T‑‑‑AAAAAA‑A‑AAAAAAAAAAA‑AA‑‑AAAttttaaaa                                                                                                  >  2:4028874/1‑123 (MQ=255)
                                gTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑A‑C‑TA‑TT‑‑GAA‑AAAAAA‑A‑AAAAAAAATAA‑AA‑‑TAAtttaaa                                                                                                    >  1:3364759/1‑125 (MQ=255)
                                gTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑A‑C‑TA‑TT‑‑G‑‑‑AAAAAA‑A‑AAAAAAAATAA‑TA‑‑TAATTTGCATa                                                                                                  >  1:4002669/1‑128 (MQ=255)
                                  atgtaattgtGAACCTATTAAAATGCTAATTTAATTTTATTAATAATAAAATTTTAAACCAAATAAATTTTGTTTGGTTTTTTTTTTT‑A‑A‑TT‑TT‑‑GA‑‑AAAAAA‑A‑AAAAAAAATAA‑TA‑‑TAATTTGCATAc                                                                                                 <  1:2431834/119‑1 (MQ=255)
                                  aaGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTATGGTATTTTTATTT‑A‑C‑TA‑TT‑‑GA‑‑AAAAAA‑A‑AAAAAAAATAA‑AA‑‑AAAttttaaaaa                                                                                                 >  1:733949/1‑122 (MQ=255)
                                   ataaaTGAGGAACCAATTACAATGCTAATTGAAGTTTTTTAATAATAAAATATTAAACCAAAAACATTGTGTTTGGTTTTTTTATTT‑A‑A‑TATTT‑‑A‑‑‑AAAAAA‑A‑AAAAAAAATAA‑TA‑‑TAATTTGCATACt                                                                                                <  2:3284869/126‑1 (MQ=255)
                                   aGAATTGCTGAACCAATTACAATTCTAATTTATGTTTATTAAAAAAAAAATATTAAACCAAATAAATTTTGTTTGGTTTTTTTATTT‑A‑C‑TATTT‑‑A‑‑‑AAAAAA‑A‑AAAAAAAATAA‑TA‑‑TAATTTGCATACt                                                                                                <  1:3266434/128‑1 (MQ=255)
                                    taaattgttcaCCAATTAAAATTCTAATTGAAGTTGATTAAAAATAAAATATTAAACAAAATACATTGTGTTTGGTTTTTTTTTTT‑A‑A‑TATTT‑‑A‑‑‑AAAAAA‑A‑AAAAAAAATAA‑TA‑‑TAATTTGCATACta                                                                                               <  2:1822421/118‑1 (MQ=255)
                                    gAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑A‑C‑TA‑TT‑‑G‑‑‑AAAAAA‑A‑AAAAAAAAAAA‑TA‑‑TAATTTTAATAatat                                                                                              >  1:1444937/1‑128 (MQ=255)
                                     aaaTGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑A‑C‑TA‑TT‑‑G‑‑‑AAAAAA‑A‑AAAAAAAATAA‑TA‑‑TAATTTGCATACtaaa                                                                                             >  2:3768391/1‑126 (MQ=255)
                                     aaaTGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑A‑C‑TA‑TT‑‑G‑‑‑AAAAAA‑A‑AAAAAAAAAAA‑AA‑‑TAATTTAAATAAtata                                                                                             >  2:3332071/1‑128 (MQ=255)
                                     aaaTGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑A‑C‑TA‑TT‑‑G‑‑‑‑‑AAAA‑A‑AAAAAAAATAA‑TA‑‑TAATTTGCATACTATaaa                                                                                           >  1:3695998/1‑128 (MQ=255)
                                      attGCTGAACAAATTACAATGGTAATGTAAGTTTTTTAATAAAAAAATATTAAACCAAATAAATTTGGTTTGGTTTTTTTTTTTAA‑T‑TT‑TT‑‑A‑‑‑AAAAAA‑A‑AAAAAAAATAA‑TA‑‑TAATTTGCATACtata                                                                                             <  2:2177939/126‑1 (MQ=255)
                                      aaTGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑A‑C‑TA‑TT‑‑G‑‑‑AAAAAA‑A‑AAAAAAAATAA‑TA‑‑TAATTTGCATACTATaa                                                                                            >  1:1077575/1‑128 (MQ=255)
                                      aaTGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAACATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑A‑C‑TA‑TT‑‑G‑‑‑AAAAAA‑A‑AAAAAAATAAA‑TA‑‑TAttttatataaaataa                                                                                            >  2:2798850/1‑117 (MQ=255)
                                       attcttcaCCAATTACAATGCTAATTGTATTTTATTAAATAAAAATAATTAAAACAAATAAATTTTGTTTTGTTTTTTTATTT‑A‑CAAA‑TT‑‑T‑‑‑AAAAAA‑A‑AAAAAAAATAA‑TA‑‑TAATTTGCATACTATaa                                                                                            <  1:2657507/121‑1 (MQ=255)
                                            taaaaaaGTAAAATGATATTTGAATTTTATTAATAATAAAATATTAAAAAAAATAAATTTTGTTTGGTTTTTTTTTTT‑A‑C‑TATTT‑‑A‑‑‑AAAAAA‑A‑AAAAAAAATAA‑TA‑‑TAATTTGCATACTATAAAAAAt                                                                                       <  1:1370511/123‑1 (MQ=255)
                                            gAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑A‑C‑TA‑TT‑‑G‑‑‑AAAAAA‑A‑AAAAAAAATAA‑AA‑‑TAATTTTAATAATATAAAAAAtt                                                                                      >  2:1297937/1‑128 (MQ=255)
                                                 aaGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑A‑C‑TA‑TT‑‑GA‑‑AAAAAA‑A‑AAAAAAAATAA‑TA‑‑TAATTTAAAAACTAAAAAAAAATtttt                                                                                  >  2:1625130/1‑128 (MQ=255)
                                                  aGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATAGTGTTTGGTTTTTTTATTT‑A‑C‑TA‑TT‑‑GA‑‑AAAAAA‑A‑AAAAAAAATAA‑TA‑‑TAATTTGAATAAAATAAAAAAttatatt                                                                                 >  2:2107411/1‑123 (MQ=255)
                                                   gTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑A‑C‑TA‑TT‑‑GA‑‑AAAAAA‑A‑AAAAAAAAAAA‑AA‑‑AAATTTACATAaaaaaaaaaaaatatatt                                                                                >  1:945261/1‑120 (MQ=255)
                                                    tACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑A‑C‑TA‑TT‑‑GA‑‑AAAAAA‑A‑AAAAAAAATAA‑TA‑‑TAATTTTCATAAAAAAAAAAAATtttttta                                                                               >  2:846767/1‑127 (MQ=255)
                                                       aatgttattttaaGTTGTTAAATATTAAAATATTAAAACAAATAAATTTTTTTTGTTTTTTTTATTT‑A‑A‑TT‑TTTAA‑‑‑AAAAAA‑A‑AAAAAAAATAA‑TA‑‑TAATTTGCATACTATAAAAAATTGTTTTTCaa                                                                             <  2:3467768/117‑1 (MQ=255)
                                                       aaTGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑A‑C‑TA‑TT‑‑GA‑‑AAAAAA‑A‑AAAAAAAAAAA‑AA‑‑AAATTTTAATAAATTAAAAAAATTTTTTTaaaa                                                                            >  1:1290327/1‑128 (MQ=255)
                                                         tGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑A‑C‑TA‑TT‑‑GAA‑AAAAAA‑A‑AAAAAAAATAA‑AA‑‑AATTTTGAATAATAAAAAAAATTTTTTTTaaaaa                                                                           >  2:3976578/1‑127 (MQ=255)
                                                         tGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑A‑C‑TA‑TT‑‑G‑‑‑AAAAAA‑A‑AAAAAAAAAAA‑TATTTATTTTGCATAAAATAAAAAATTGTTTTTAAAAt                                                                           >  1:1706850/1‑128 (MQ=255)
                                                             aaGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑A‑C‑TA‑TT‑‑G‑‑‑‑AAAAA‑A‑AAAAAAAATAA‑AA‑‑TAATTTGCATAAAATAAAAAATTGTTTTACAAAAAATTAta                                                                    >  2:2058799/1‑127 (MQ=255)
                                                               gTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑A‑C‑TA‑TT‑‑GA‑‑AAAAAA‑A‑AAAAAAAAAAA‑TA‑‑AAATTTTAATAATATAAAAAATTTTTTTAAAAATaataatt                                                                    >  1:3957610/1‑123 (MQ=255)
                                                                ttaatttctttaataaaAAAATATAAAACAAAATAATTTGTGTTTGGTTTTTTTATTA‑A‑A‑TA‑TTTAA‑‑‑AAAAAA‑A‑AAAAAAAATAA‑TA‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTAtt                                                                    <  1:3415246/117‑1 (MQ=255)
                                                                 gatttttattaataaaAAAATATTAAAACAAATAAATTGTGTTTTGTTTTTTTATTT‑A‑A‑TA‑TT‑‑T‑‑‑AAAAAA‑A‑AAAAAAAATAA‑TA‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATT‑CAg                                                                <  1:1543384/118‑1 (MQ=255)
                                                                   tttttattaaaaataaAATATTAAACCAAATAAATTGTGTTTGGTTTTTTTATTT‑A‑A‑TA‑TT‑‑T‑‑‑AAAAAA‑A‑AAAAAAAATAA‑TA‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATT‑CAGGa                                                              <  2:3835128/117‑1 (MQ=255)
                                                                     ttGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTATATTATTT‑A‑C‑TA‑TT‑‑GA‑‑AAAAAA‑A‑AAAAAAAATAA‑AA‑‑TAATTTGCTTACTATAAAAAATTGATTTAAAAAAAATTATA‑AAGGAg                                                             >  1:3601167/1‑128 (MQ=255)
                                                                       gatgaATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑A‑C‑TA‑TT‑‑GAA‑AAAAAA‑A‑AAAAAAAAAAA‑TA‑‑AAATTTTAATAATAAAAAAAATTTTTTTTAAAAAAATTAtaaataata                                                             >  2:1380783/1‑120 (MQ=255)
                                                                        atgaATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑A‑C‑TA‑TT‑‑GA‑‑AAAAAA‑A‑AAAAAAAATAA‑TA‑‑TAATTTAAATACTATAAAAATTTATTATAAAAATAATTAAT‑CATGATT‑aa                                                         >  1:44765/1‑128 (MQ=255)
                                                                          gaATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑A‑C‑TA‑TT‑‑GA‑‑AAAAAA‑A‑AAAAAAAAAAA‑TA‑‑AAATTTGAATAATAAAAAAAATTTTTTTAAAAATAATTAtaaagaattatat                                                         >  2:1720692/1‑116 (MQ=255)
                                                                                  aaaGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑A‑C‑TA‑TT‑‑GA‑‑AAAAAA‑A‑AAAAAAAATAA‑TA‑‑TAATTTGAATAATATAAAAAATTTTTTTTAAAATAATTATT‑CATAATT‑AAAT‑TTaaaaaa                                              >  1:86274/1‑128 (MQ=255)
                                                                                      aTTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑A‑C‑TA‑TT‑‑G‑‑‑AAAAAA‑A‑AAAAAAAATAATTA‑‑TATTTTCAATAAT‑TAAAAAATTTGTTTTAAAATTATTTTTAAAGGATT‑AAAT‑TTAAAAAAcaat                                          >  1:2262920/1‑125 (MQ=255)
                                                                                       ttAAACCAAATTATTTGTGTTTGGTTTTTTTATTT‑A‑A‑TA‑TT‑‑GA‑‑AAAAAA‑A‑AAAAAAAATAA‑TA‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATT‑CAGGAGT‑AAAT‑TTAAAAAACCAag                                         <  1:3566254/128‑1 (MQ=255)
                                                                                       ttAAAAAAAAAAAATTTTTTTTGGTTTTTTTATTT‑A‑A‑TATTT‑‑A‑‑‑AAAAAA‑A‑AAAAAAAATAA‑TA‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATT‑CAGGAGT‑AAAT‑TTAAAAAACCAag                                         <  2:318161/128‑1 (MQ=255)
                                                                                        tAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑A‑C‑TA‑TT‑‑GA‑‑AAAAAA‑A‑AAAAAAAATAA‑TA‑‑TAATTTTGATAATTTAAAAAATTTTTTTTAAAATAATTATT‑AATGATT‑TAAT‑TTAAAAAACaaaaa                                        >  1:3742609/1‑126 (MQ=255)
                                                                                         aaaCCAAATACATTGTGTTTGGTTTTTTTATTT‑A‑C‑TA‑TT‑‑GAAAAAAAAA‑A‑AAAAAAAAAAA‑TT‑‑TAATTTCAATAAAAAAAAAAATTTTTTTTAAAAAAATTAAA‑AATAATT‑AAAA‑TTAAAAAACaaaa                                         >  2:2506376/1‑127 (MQ=255)
                                                                                         aaaCCAAATACATTGTGTTTGGTTTTTTTATTT‑A‑C‑TA‑TT‑‑GA‑‑AAAAAA‑A‑AAAAAAAATAA‑TA‑‑TAATTTCAATAATATAAAAAATTTTTTTAAAAATAATTATA‑AAGTATT‑AAAT‑TTAAAAAACaaatat                                       >  2:3897217/1‑125 (MQ=255)
                                                                                           tcaaattaaaTTGTGTTTGTTTTTTTTATTT‑T‑A‑TA‑TG‑‑T‑‑‑AAAAAA‑A‑AAAAAATATAA‑TA‑‑TATTTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATT‑CAGGAGT‑AAAT‑TTAAAAAACCAAGAGTta                                    <  1:2500576/119‑1 (MQ=255)
                                                                                           actataTACATTGTGTTTGGTTTTTTTATTT‑A‑C‑TT‑TT‑‑‑‑‑‑‑TAAAA‑A‑AAAAAAAATAA‑TA‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATT‑CAGGAGT‑AAAT‑TTAAAAAACCAAGAGTtata                                  <  2:3695998/123‑1 (MQ=255)
                                                                                            ccAAATACATTGTGTTTGGTTTTTTTATTT‑A‑C‑TA‑TT‑‑GA‑‑AAAAAA‑A‑AAAAAAAATAA‑AT‑‑TATTTTGCATAATATAAAAAATTTTTTTTCAAATATTTATT‑AAGGATT‑AAAT‑TTATAAAACAAAAAGtat                                    >  1:800767/1‑126 (MQ=255)
                                                                                            ccAAATACATTGTGTTTGGTTTTTTTATTT‑A‑C‑TA‑TT‑‑GA‑‑AAAAAA‑A‑AAAAAAAAAAA‑TA‑‑AAATTAAAATAAAATAAAAAATATTTTTTAAAAAAAAAATT‑AATTAAA‑AAAA‑TTAAAAAACaaaaaataa                                    >  2:2432888/1‑122 (MQ=255)
                                                                                            ccAAATAAATTGTGTTTTGTTTTTTTATTT‑A‑C‑TATTT‑‑A‑‑‑AAAAAA‑A‑AAAAAAAATAA‑TA‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATT‑CAGGAGT‑AAAT‑TTAAAAAACCAAGAGTta                                    <  2:753121/128‑1 (MQ=255)
                                                                                            acAAATAATTTGTGTTTGTTTTTTTTATTT‑A‑C‑TT‑TT‑‑G‑‑‑‑TAAAA‑A‑AAAAAAAATAA‑TA‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATT‑CAGGAGT‑AAAT‑TTAAAAAACCAAGAGTtata                                  <  2:651931/127‑1 (MQ=255)
                                                                                            acAAAAAAATTTTGTTTTGTTTTTTTAATT‑A‑A‑AATTT‑‑T‑‑‑AAAAAA‑A‑AAAAAAAATAA‑TA‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATT‑CAGGAGT‑AAAA‑TTAAAAAACCAAGAGTta                                    <  1:2578250/127‑1 (MQ=37)
                                                                                              aaataaatTGTTTTTGGTTTTTTTATTT‑A‑A‑TATTT‑‑A‑‑‑AAAAAA‑A‑AAAAAAAATAA‑TA‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATT‑CAGGAGT‑AAAT‑TTAAAAAACCAAGAGTtata                                  <  2:1041179/128‑1 (MQ=255)
                                                                                              aaaTACATTGTGTTTGGTTTTTTTATTT‑A‑C‑TA‑TT‑‑G‑‑‑AAAAAA‑A‑AAAAAAAAAAA‑TT‑‑TAATTTGCATAATAAAAAAAATTTTTTTTAAATAAATTATA‑AATAATT‑AAAT‑TTAAAAAACAATTATTTATaa                                 >  1:346591/1‑128 (MQ=255)
                                                                                               aatattttGTGTTTGGTTTTTTTTTTT‑A‑A‑TA‑TTTAA‑‑‑AAAAAA‑A‑AAAAAAAATAA‑TA‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATT‑CAGGAGT‑AAAT‑TTAAAAAACCAAGAGTtata                                  <  2:3078838/122‑1 (MQ=255)
                                                                                               aaTACATTGTGTTTGGTTTTTTTATTT‑A‑C‑TA‑TT‑‑GAA‑AAAAAA‑A‑AAAAAAAATTA‑TA‑‑TATTTTGAATAATATAAAAAATTGTTTTTAAAATAAGTATT‑CTGGAGA‑TATT‑TTAAAAAAACAAGAGTtata                                  >  1:3899480/1‑128 (MQ=255)
                                                                                               aaTACATTGTGTTTGGTTTTTTTATTT‑A‑C‑TA‑TA‑‑G‑‑‑AAAAAATA‑AAAAAAAATAA‑AA‑‑TAATTTGAATACTATAAAAAATTGATTTTAAAATAATTATT‑CACTAGTAAAAT‑TTaaaaaaaatgatttaata                                  >  1:181052/1‑116 (MQ=255)
                                                                                                ttaaaTTGTTTTTGTTTTTTTTTTTT‑A‑T‑TA‑TTTAA‑‑‑AAAAAA‑A‑AAAAAAAATAA‑TA‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATT‑CAGGAGT‑AAAT‑TTAAAAAACCAAGATTTATaa                                 <  2:582256/124‑1 (MQ=255)
                                                                                                 taaattttttttGGTTTTTTTATTT‑A‑A‑AT‑TT‑‑T‑‑‑AAAAAA‑A‑AAAAAAAATAA‑TA‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATT‑CAGGAGT‑AAAT‑TTAAAAAACCAAGAGTTATAAATc                              <  1:17663/119‑1 (MQ=255)
                                                                                                 tACATTGTGTTTGGTTTTTTTATTT‑A‑C‑TA‑TT‑‑GAA‑AAAAAA‑A‑AAAAAAAAAAA‑AA‑‑TAATTTGAATAATATAAAAAAATTTTTTTCAAATAAGTATA‑AGGGAGT‑AATT‑TAAAAAAACCAAGAGTtaataa                                >  1:2093160/1‑124 (MQ=255)
                                                                                                 caCAATGTATTTGGTTTTTTTATTT‑A‑C‑TA‑TT‑‑GA‑‑AAAAAA‑A‑AAAAAAAATAA‑TA‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAATAATTATT‑AAGTATT‑AAAA‑TTAAAAAACCAAGAGTTATaaaa                               >  2:3402653/2‑127 (MQ=255)
                                                                                                   tatttgttttGGTTTTTTTTTTT‑A‑C‑AATTT‑‑A‑‑‑AAAAAA‑A‑AAAAAAAATAA‑TA‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATT‑CAGGAGT‑AAAT‑TTAAAAAACCAAGAGTTATAAATCt                             <  2:2648673/121‑1 (MQ=255)
                                                                                                   caatgtaTTTGGTTTTTTTATTT‑A‑C‑TA‑TT‑‑G‑‑‑AAAAAA‑A‑AAAAAAAATAA‑TA‑‑AAATTTGCAAAAAAAAAAAAATTTTTTTTAAAAAAATTATT‑AAGTAGT‑AAAT‑TTAAAAAAAAAAAATTTATAAATAtt                            >  2:1921026/4‑128 (MQ=255)
                                                                                                    aTTTTGTTTGGTTTTTTTATTT‑A‑A‑AATTT‑‑A‑‑‑AAAAAA‑A‑AAAAAAAATAA‑TA‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATT‑CAGGAGT‑AAAT‑TTAAAAAACCAAGATTTATAACTCtt                            <  2:3625368/128‑1 (MQ=255)
                                                                                                    aTTGTGTTTGGTTTTTTTATTT‑A‑C‑TA‑TT‑‑GAA‑AAAAAA‑A‑AAAAAAAATAA‑TA‑‑TATTTTACATAATATAAAAAATTGTTTTTAAAAAAAGTATT‑CCGGAGT‑AAAT‑TTAAAAAAAATAGAGTTatatatat                             >  1:2007887/1‑126 (MQ=255)
                                                                                                     ttGTGTTTGGTTTTTTTATTT‑A‑C‑TA‑TT‑‑GA‑‑AAAAAA‑A‑AAAAAAAATAA‑TA‑‑AAATTTGAATACTATAAAAAATTTTTTTTAAAAAAACTATT‑CAGTAGT‑AAAT‑TTAAAAAACCAATAATTATAAATATTg                           >  2:3011376/1‑128 (MQ=255)
                                                                                                     ttGTGTTTGG‑TTTTTTATTT‑A‑C‑TA‑TT‑‑GA‑‑AAAAAA‑A‑AAAAAAAAAAA‑TA‑‑AATTTTGATTAATAT‑AAAAATTTTTTTTAAAATTAGTATT‑AAAGAAT‑TAATATTAAAAAACAAAAATtaataattatttt                          >  1:58907/1‑121 (MQ=255)
                                                                                                     atttatttGTTTTTTTTATTTAA‑T‑TT‑TT‑‑A‑‑‑AAAAAA‑A‑AAAAAAAATAA‑TA‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAATTAAGTATT‑CAGGAGT‑AAAT‑TTAAAAAACCAAGAGTTATAAATCTTg                           <  1:63642/123‑1 (MQ=255)
                                                                                                     atgtaTTTGGTTTTTTTATTT‑A‑C‑TA‑TT‑‑GA‑‑AAAAAA‑A‑AAAAAAAATAA‑AA‑‑TAATTTGCATACAAAAAAAAATTGTTTTTCAAATAAGTATT‑AAGTAGT‑AAAT‑TAAAAAAACAAAAAGTTAAAAAACTTg                           >  2:2726979/2‑128 (MQ=255)
                                                                                                     atgtaTTTGGTTTTTTTATTT‑A‑C‑TA‑TT‑‑GA‑‑AAAAAA‑A‑AAAAAAAAAAA‑TA‑‑TAATTTGAATAATATAAAAAATTGTTTTTAAAATAATTATT‑AAGTATT‑AATT‑TTAAAAAAAAAAGAGTTTTaataattt                           >  1:311406/2‑122 (MQ=255)
                                                                                                      tttgttttgtttTTTTATTT‑ATT‑TT‑TT‑‑A‑‑‑AAAAAA‑A‑AAAAAAAATAA‑TA‑‑TAATTTGCATACTATAAAAATTTGTTTTTCAAATAAGTATT‑CAGGAGT‑AAAT‑TTAAAAAACCAAGAGTTATAAATCTTgg                          <  2:1465433/126‑1 (MQ=255)
                                                                                                      tgtgTTTGGTTTTTTTATTT‑A‑C‑TA‑TT‑‑GA‑‑AAAAAA‑A‑AAAAAAAAAAA‑TA‑‑TAATTTGCATAATTTAAAAAATTGTTTTTAAAATAATTATT‑CAGTATA‑AAAT‑TTAAAAAACAAATAGTTATAAATATTgt                          >  1:1154614/1‑127 (MQ=255)
                                                                                                      tgtaTTTGGTTTTTTTATTT‑A‑C‑TA‑TT‑‑GA‑‑AAAAAA‑A‑AAAAAAAAAAA‑TA‑‑TAATTTGAATAATATAAAAAATTTTTTTAAAAATAATAATT‑AATTAAT‑AAAT‑TTAAAAAACAAAGAATTATAATTATTgg                          >  1:1630439/1‑128 (MQ=255)
                                                                                                       gtatttGGTTTTTTTATTT‑A‑C‑TA‑TT‑‑GA‑‑AAAAAA‑A‑AAAAAAAATAA‑TA‑‑TAATTTGCATAATAAAAAAAATTTTTTTTAAAATAAGTATT‑AAGGATT‑AAAT‑TTAAAAAACCAAAATTTATAAATCTTGGt                         >  2:929833/4‑128 (MQ=255)
                                                                                                        ttttttGTTTTTTTATTT‑A‑A‑AATTT‑‑A‑‑‑AAAAAA‑A‑AAAAAAAATAA‑TA‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATT‑CAGGAGT‑AAAT‑TTAAAAAACCAAGATTTATAACTCTTGGtt                        <  1:2900141/126‑1 (MQ=255)
                                                                                                         gtTTGGTTTTTTTATTT‑A‑C‑TA‑TT‑‑GA‑‑AAAAAA‑A‑AAAAAAAATAA‑TA‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAATAATTATT‑CAGGATA‑AATT‑TTAAAAAACAAAGATTTATAAATAttttttt                       >  1:2143340/1‑123 (MQ=255)
                                                                                                          tttGGTTTTTTTATTT‑A‑C‑TA‑TT‑‑GAA‑AAAAAA‑A‑AAAAAAAATAA‑TA‑‑TAATTTGAATAATATAAAAAATTGTTTTTCAAAAAATTATT‑ATTTTGT‑AAAT‑TTAAAAAACAAATATTTATAAATAttttttt                       >  2:3560083/1‑123 (MQ=255)
                                                                                                          tttGGTTTTTTTATTT‑A‑C‑TA‑TT‑‑GA‑‑AAAAAA‑A‑AAAAAAAATAA‑AA‑‑TAATATACAAAAAATAAAAATTATTTTTTAAAATAATAAAT‑CATAAGA‑AAAT‑TTAAAAAAAAAATATTTATAAAAATTTGtttt                      >  1:272732/1‑128 (MQ=255)
                                                                                                            ggttttttttATTA‑A‑A‑AT‑TT‑‑A‑‑‑AAAAAA‑A‑AAAAAAAATAA‑TA‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATT‑CAGGAGT‑AAAT‑TTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTg                   <  1:520446/125‑1 (MQ=255)
                                                                                                             ggTTTTTTTATTT‑A‑A‑TA‑TT‑‑T‑‑‑AAAAAA‑A‑AAAAAAAATAA‑TA‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATT‑CAGGAGT‑AAAT‑TTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGt                  <  1:3802216/128‑1 (MQ=255)
                                                                                                              ttttttttATTT‑T‑T‑TATTT‑‑A‑‑‑AAAAAA‑A‑AAAAAAAATAA‑TA‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATT‑CAGGAGT‑AAAT‑TTAAAAAACCAAGATTTATAAATCTTGGTTTTTTGt                  <  2:2323928/127‑1 (MQ=255)
                                                                                                                ttttttATTT‑T‑A‑TA‑TT‑‑T‑‑‑AAAAAA‑ATAAAAAAAATAA‑TA‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATT‑CAGGAGT‑AAAT‑TTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGttt                <  2:3524014/128‑1 (MQ=255)
                                                                                                                ttttttATTT‑A‑A‑TATTT‑‑A‑‑‑AAAAAA‑A‑AAAAAAAATAA‑TA‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATT‑CAGGAGT‑AAAT‑TTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGttt                <  1:3063488/128‑1 (MQ=255)
                                                                                                                 tttttATTT‑A‑C‑TA‑TT‑‑GA‑‑AAAAAA‑A‑AAAAAAAATAA‑TA‑‑TAATTTGCATACTATAAAAAATTTTTTTTAAAATAATTATT‑CAGGATT‑AAAT‑TTAAAAAACCAATATTTAAAAATATTGTTTTTTTTTTta               >  2:1198293/1‑128 (MQ=255)
                                                                                                                 tttttATTT‑A‑C‑TA‑TT‑‑GA‑‑AAAAAA‑A‑AAAAAAAATAA‑TA‑‑TAATTTGCATAATATAAAAAATTTTTTTTCAAATAATTATT‑AAGGAGT‑AATT‑TTAAAAAACAAAGAGTTATAAATATTGTTTTTTTGTTta               >  1:3006274/1‑128 (MQ=255)
                                                                                                                  ttttATTTAA‑A‑TT‑TT‑‑A‑‑‑AAAAAA‑A‑AAAAAAAATAA‑TA‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATT‑CAGGAGT‑AAAT‑TTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTtat              <  2:1996615/128‑1 (MQ=255)
                                                                                                                   tttattt‑a‑C‑TA‑TT‑‑GA‑‑AAAAAA‑A‑AAAAAAAATAA‑TA‑‑TAATTTGCATACTATAAAAAATTTTTTTTAAAATAATTATT‑AATTAGA‑AAAT‑TTAAAAAACAAAAAGTTATAAATATTTTTTTTTTTTTtata             >  1:2340904/1‑128 (MQ=255)
                                                                                                                     tattt‑a‑C‑TA‑TT‑‑G‑‑‑AAAAAA‑A‑AAAAAAAATAA‑TA‑‑AAATTTGCATAATATAAAAAATTGTTTTTCAAATAAGTATT‑CAGGAGT‑AAAT‑TTAAAAAACCAACATTTATAAAACTTGTTTTTTTGTTTAtatta          >  2:2591317/1‑128 (MQ=255)
                                                                                                                      aatt‑a‑A‑TA‑TT‑‑GA‑‑AAAAAA‑A‑AAAAAAAATAA‑TA‑‑TAATAAGCATACTATAAAAAATTGTTTTTCAAATAAGTATT‑CAGGAGT‑AAAT‑TTAAAAAACCAAGATTTAAAACTCTTGGttttttaaatttactc          <  1:2945204/126‑11 (MQ=25)
                                                                                                                               tA‑TT‑‑T‑‑‑AAAAAA‑A‑AAAAAAAATAA‑TA‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATT‑CAGGAGT‑AAAT‑TTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTATATTATTATTTg   <  1:2211579/128‑1 (MQ=255)
                                                                                                                                a‑TT‑‑G‑‑‑AAAAAA‑A‑AAAAAAAATAA‑TA‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATT‑CAGGAGT‑AAAT‑TTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTATATTATTATTTGt  <  1:1215369/128‑1 (MQ=255)
                                                                                                                                   |                                                                                                                                          
TCTTTACTTCTTTATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑A‑C‑TA‑TT‑‑G‑‑‑AAAAAA‑A‑AAAAAAAATAA‑TA‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATT‑CAGGAGT‑AAAT‑TTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTATATTATTATTTGT  >  CP016816/34817‑35069

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.