BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP016816	420,253	0	C	A	47.8%	615.8 / inf	1009	intergenic (‑536/+307)	JCVSYN2_01895/JCVSYN2_01900	30S ribosomal protein S10/tRNA‑Thr
Reads supporting (aligned to +/- strand): ref base C (143/352); new base A (372/81); total (532/477)
Fisher's exact test for biased strand distribution p-value = 0.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 1052 total aligned reads displayed.

AAAACTACTAGCACTTTTTTAAAAAATTTAAAATTAAAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑‑T‑‑GC‑T‑C‑G‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAA‑AAATAT‑AATTTATTTGATTAAACGTATATTTATGTT‑TAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAAT‑‑ATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTA  >  CP016816/420128‑420380

  aaaaacattcaattttttAATAAATTTTTTATTTTAATAATTTTATTATTTTTAAAATTTTTAAATTATTTTAAAATCATTTTATATTAATAAATTTTT‑‑T‑‑TC‑T‑A‑GT‑‑TTTTTTTTTTTTTTTTT‑‑ACaa‑a                                                                                                                                  <  2:3663052/116‑1 (MQ=255)

  aaCTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑‑T‑‑GC‑T‑C‑G‑‑‑TTTTTTTTTTTTTTTTT‑‑TTaa‑aa                                                                                                                                 >  2:3326216/1‑128 (MQ=255)

     tactaGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑‑T‑‑GC‑T‑C‑GT‑‑TTTTTTTTTTTTTTTTT‑‑ACAA‑AAat                                                                                                                               >  2:357241/1‑128 (MQ=255)

     tactaGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑‑T‑‑GC‑T‑C‑G‑‑‑TTTTTTTTTTTTTTTTT‑‑Taaa‑aaaaa                                                                                                                              >  2:928175/1‑126 (MQ=255)

     tactaGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑‑T‑‑GC‑T‑C‑G‑‑‑TTTTTTTTTTTTTTTTT‑‑ACaa‑aaaaa                                                                                                                              >  1:2758143/1‑126 (MQ=255)

     taatttgaattttttAAAAAATTTTTAATTTTAATAAATTTTTTTTTTTTAAAATTTTTTAATTTTTTTAAAATAATTTTATATTAATAAATTTTT‑‑T‑‑TT‑T‑T‑GT‑‑TTTTTTTTTTTTTTTTT‑‑ACAA‑AAat                                                                                                                               <  2:3599581/119‑1 (MQ=255)

        tatcaattttttAAATAATTTTTAATTTTAATAATTTTATTATTTTTAAAATTTTTAAATTTTTTTTAAATATTTTTTTATTTATTTATTTTA‑‑T‑‑GA‑T‑A‑T‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAA‑AAATAT‑aa                                                                                                                          <  2:2200003/122‑1 (MQ=255)

          gCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑‑T‑‑GC‑T‑C‑G‑‑‑TTTTTTTTTTTTTTTTT‑‑Taaa‑aaaaaaaaat                                                                                                                         >  1:872513/1‑121 (MQ=255)

             cTTTTTTAAAAAATTTTTAATTTTAATAACTGATTTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑‑T‑‑GC‑T‑C‑GT‑‑TTTTTTTTTTTTTTTTT‑‑AAAA‑AAatattttttt                                                                                                                       >  2:2606919/1‑122 (MQ=255)

             cTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑‑T‑‑GC‑T‑C‑GT‑‑TTTTTTTTTTTTTTTTT‑‑ACAA‑AAATAA‑Aattta                                                                                                                      >  1:4032291/1‑128 (MQ=255)

             cTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑‑T‑‑GC‑T‑C‑G‑‑‑TTTTTTTTTTTTTTTTTA‑ACAA‑AAATAA‑Aattaa                                                                                                                      >  1:3681477/1‑126 (MQ=255)

             cTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑‑T‑‑GC‑T‑C‑G‑‑‑TTTTTTTTTTTTTTTTT‑‑AAAA‑AAATAT‑Attttat                                                                                                                     >  1:299151/1‑128 (MQ=255)

              ttttttAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑‑T‑‑GC‑T‑C‑GT‑‑TTTTTTTTTTTTTTTTT‑‑AAAA‑AAAAAA‑Aattttt                                                                                                                     >  2:3287115/1‑126 (MQ=255)

              ttttttAAAAAATTTTTAATTTTAATAAATGTATTTTTTTTATAATTTTTTAATTTTTTTAAAATAATTATATATTAATAAATTTTT‑‑T‑‑TC‑T‑A‑GT‑‑TTTTTTTTTTTTTTTTT‑‑ACAA‑AAATAT‑Aatttat                                                                                                                     <  1:3287115/128‑1 (MQ=255)

                ttttAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑‑T‑‑GC‑T‑C‑GTT‑TTTTTTTTTTTTTTTTT‑‑AAAA‑AAAAAT‑Aatttatt                                                                                                                    >  1:2491716/1‑128 (MQ=255)

                  ttAAAAAATTTTTTATTTTTATAAATTATTTTTTTTTTAAATTTTTTAATTATTTTAAAATAATTTTATAATTATTAATTTTT‑‑T‑‑TT‑T‑T‑G‑‑‑‑TTTTTTTTTTTTTTTT‑‑ACAA‑AAATAT‑AATTTATTTGAtt                                                                                                               <  2:1083817/128‑1 (MQ=255)

                   tAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑‑T‑‑GC‑T‑C‑GT‑‑TTTTTTTTTTTTTTTTT‑‑AAAA‑AAATAT‑Aaataattttaa                                                                                                                >  1:513423/1‑125 (MQ=255)

                    aaaaaaTTTTTAATTTTAATAACTGAATTTTTTTTAAAATTGTTAAATTTTTTTCAAATAATTATCTTTTAATAAATTTTA‑‑T‑‑GC‑T‑C‑G‑‑‑‑TTTTTTTTTTTTTTTT‑‑ACAA‑AAATAT‑AATTTATTTGATTaa                                                                                                             <  1:3245721/128‑1 (MQ=255)

                     aaaaaTTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑‑T‑‑GC‑T‑C‑T‑‑‑TTTTTTTTTTTTTTTTTTAAAAA‑AAAAAA‑AATTTATTTAAtt                                                                                                               >  1:2718312/1‑128 (MQ=255)

                      aaatTTTTAATTTTAAATAA‑TTAATTATTTTTTAAATTTTTTAATTTTTTTTAATTTATTATTTTTTAATTAATTTTA‑‑T‑‑TCTT‑T‑T‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAA‑AAATAT‑AATTTATTTGATTaaa                                                                                                            <  1:836781/128‑1 (MQ=255)

                      aaaaTTTTTAATTTTAATAACTTAATTATTTTTAAAATTGTTAAATTATTTTAAAATCATTATCTATTAATCAATTTTA‑‑T‑‑TC‑T‑C‑G‑‑‑‑‑TTTTTTTTTTTTTTT‑‑ACAA‑AAATAT‑AATTTATTTGATTAAACg                                                                                                          <  1:188480/128‑1 (MQ=255)

                      aaaaTTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑‑T‑‑GC‑T‑C‑GT‑‑TTTTTTTTTTTTTTTTT‑‑AAAA‑AAATAT‑AATTTATTTTATTaa                                                                                                             >  1:462340/1‑128 (MQ=255)

                      aaaaTTTTTAATTTTAATAAATTAATTATTTTTTAAATTTTTAAATTATTTTAAAATAATTATTTATTAATTAATTTTA‑‑T‑‑TC‑T‑T‑G‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAA‑AAATAT‑AATTTATTTGATTaaa                                                                                                            <  1:1474124/128‑1 (MQ=255)

                       aaaTTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCTAATCATTATCTATTAATCAATTTTA‑‑T‑‑GC‑T‑C‑GT‑‑TTTTTTTTTTTTTTTTT‑‑AAAA‑AAATAT‑AATTTATTTTATTaaa                                                                                                            >  1:120612/1‑128 (MQ=255)

                         atttttaattttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑‑T‑‑GC‑T‑C‑GTTTTTTTTTTTTTTTTTTTT‑‑AAAA‑AAAAAT‑ATTTTATTTTTTTaaa                                                                                                            >  2:2776601/13‑128 (MQ=255)

                               aattttaatAAATTAATTATTATTAATATTTTTAAATTTTTTTAAAATTATTATATATTTATAAATTTTT‑‑T‑‑TT‑TAT‑T‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAA‑AAATAT‑AATTTATTTGATTAAACGTATAtt                                                                                                    <  1:1726600/122‑1 (MQ=255)

                                  tttaataaatttatttttTTTTAAATTTTTAAATTATTTTTAAATTATTATATATTAATTAATTTTATTT‑‑TA‑T‑T‑T‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAA‑AAATAT‑AATTTATTTGATTAAACGTATATTTa                                                                                                  <  1:3113747/116‑1 (MQ=255)

                                  tttaataaatttatttttTTTAAAATTTTTAAATTTTTTTTAAATAATTATATATTAATAAATTTTA‑‑TTATT‑T‑T‑T‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAA‑AAATAT‑AATTTATTTGATTAAACGTATATTTa                                                                                                  <  1:3728711/116‑1 (MQ=255)

                                   ttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑‑T‑‑GC‑T‑C‑GT‑‑TTTTTTTTTTTTTTTTT‑‑AAAA‑AAATAT‑AATTTATTTTATTAAACTAATATTTATg                                                                                                >  1:2311301/3‑128 (MQ=255)

                                   ttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑‑T‑‑GC‑T‑C‑G‑‑‑TTTTTTTTTTTTTTTTTTAAAAA‑AAATAT‑AATTTATTTTATAAAAATTATATTTAt                                                                                                 >  1:3784721/3‑128 (MQ=255)

                                   ttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑‑T‑‑GC‑T‑C‑G‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAA‑AAATAT‑AATTTATTTGATTAAACGTATTTTTAttt                                                                                               >  2:3237583/3‑126 (MQ=255)

                                   ttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑‑T‑‑GC‑T‑C‑G‑‑‑TTTTTTTTTTTTTTTTT‑‑AAAA‑AAATAT‑AATTTATTTGATTAATCTTTTTTTTATGt                                                                                               >  1:935730/3‑128 (MQ=255)

                                    taatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑‑T‑‑GC‑T‑C‑GTTTTTTTTTTTTTTTTTTTT‑‑AAAA‑AAATAT‑AATTAATTtaaataaaattaatttttt                                                                                                 >  1:59648/2‑117 (MQ=255)

                                    taatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑‑T‑‑GC‑T‑C‑GT‑‑TTTTTTTTTTTTTTTTT‑‑AAAA‑AAATAA‑AATTTTTTTTATAAAAATTAAATTTAttt                                                                                               >  2:374504/2‑126 (MQ=255)

                                     aatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑‑T‑‑GC‑T‑C‑G‑‑‑TTTTTTTTTTTTTTTTT‑‑AAAA‑AAAAAT‑AATTTATTTGATTAAACTTATAttatttttt                                                                                             >  1:1000582/1‑121 (MQ=255)

                                       tAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑‑T‑‑GC‑T‑C‑G‑‑‑TTTTTTTTTTTTTTTTT‑‑AAAA‑AAATAT‑AATTTATTTTATTAAACGTATATTTATGTT‑taa                                                                                          >  1:2867110/1‑128 (MQ=255)

                                           taatttattTTTAAAATTTTTTATTTATTTT‑AAATTATTTTTATTTAAAAAATTTTT‑‑T‑‑TC‑C‑A‑G‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAA‑AAATAT‑AATTTATTTGATTAAACGTATATTTATGTT‑TAATaaaa                                                                                     <  2:2285445/124‑1 (MQ=255)

                                             aaTTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑‑T‑‑GC‑T‑C‑G‑‑‑TTTTTTTTTTTTTTTTT‑‑AAAA‑AAATAT‑AATTTATTTAATTAAACTTATATTTATGTT‑TAATaaaaa                                                                                    >  2:453082/1‑128 (MQ=255)

                                              attattTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑‑T‑‑GC‑T‑C‑GT‑‑TTTTTTTTTTTTTTTTT‑‑AAAA‑AAATTT‑AATTTATTTTTTTAAAATTATTTTTTTTTT‑TATTaaaaa                                                                                    >  1:3180520/1‑128 (MQ=255)

                                               ttattTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑‑T‑‑GC‑T‑C‑G‑‑‑TTTTTTTTTTTTTTTTT‑‑AAAATAAATAA‑AATTTATTTAATTAAACTTAAATTAATATT‑taaataaata                                                                                   >  1:1581941/1‑121 (MQ=255)

                                               ttattTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑‑T‑‑GC‑T‑C‑G‑‑‑TTTTTTTTTTTTTTTTT‑‑AAAA‑AAAAATAAATTTTATTGATTAAAAGTTTATTATTTTT‑TAATaaaaaa                                                                                   >  1:3586663/1‑127 (MQ=255)

                                               ttattTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑‑T‑‑GC‑T‑C‑G‑‑‑‑‑TTTTTTTTTTTTTTT‑‑ACAA‑AAATAT‑AATTTATTTTATAAAACGTATTTTTATGTT‑TAATAAAAATgta                                                                                >  1:2095628/1‑126 (MQ=255)

                                                ttttttttAATTTTTTTATTTATTTTAAATTAATTTTTTTATAATCAATTTTT‑‑T‑‑TT‑T‑T‑GT‑‑TTTTTTTTTTTTTTTTT‑‑ACAA‑AAATAT‑AATTTATTTGATTAAACGTATATTTATGTT‑TAATAAAAATg                                                                                  <  2:3991104/126‑1 (MQ=255)

                                                tattTTTAAAATTTTTAAATTATTTTAAAATAATTTTTTATTAATCAATTTTA‑‑T‑‑TC‑T‑C‑G‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAA‑AAATAT‑AATTTATTTGATTAAACGTATATTTATGTT‑TAATAAAAATgg                                                                                 <  2:3423758/128‑1 (MQ=255)

                                                   tttttaaatttttaaaTTATTTTAAAATAATTATATATTAATTATTTTTA‑‑T‑‑GC‑T‑T‑GTT‑TTTTTTTTTTTTTTTTT‑‑ACAA‑AAATAT‑AATTTATTTGATTAAACGTATATTTATGTT‑TAATAAAAATGGa                                                                                <  1:3464930/128‑1 (MQ=255)

                                                   ttttCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑‑T‑‑GC‑T‑C‑GT‑‑TTTTTTTTTTTTTTTTT‑‑AAAA‑AAATAT‑AATTTATTTTATTAAACTTAATTTTATTTT‑TAAAAAAAATGTaa                                                                               >  2:3117572/1‑128 (MQ=255)

                                                      tCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑‑T‑‑GC‑T‑C‑GT‑‑TTTTTTTTTTTTTTTTT‑‑AAAA‑AAATAT‑AATTTATTTTATTAAAAATATATTTATTTT‑TAAAAAAAATTTaaaat                                                                            >  1:2651878/1‑127 (MQ=255)

                                                       cAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑‑T‑‑GC‑T‑C‑GTT‑TTTTTTTTTTTTTTTTT‑‑AAAA‑AAAAAT‑AATTTATTTTATTAAAATTATTTTTTTTTT‑TAATAAAAATgtagatc                                                                            >  1:2228917/1‑122 (MQ=255)

                                                        aatttgaaaaaTAATTTTCAAATCATTATCTATTAATCAATTTTA‑‑T‑‑GC‑T‑C‑GT‑‑TTTTTTTTTTTTTTTTT‑‑AAAA‑AAATAT‑AATTTATTTTATTAAACTTATATTTATTTT‑TAATAAAAATTGAaaaaaa                                                                          >  2:2654245/9‑128 (MQ=255)

                                                         aaTTTTTAAATTATTTTAAAATAATTTTATATTAATAAATTTTT‑‑T‑‑GC‑T‑T‑GT‑‑TTTTTTTTTTTTTTTTT‑‑ACAA‑AAATAT‑AATTTATTTGATTAAACGTATATTTATGTT‑TAATAAAAATGGAaaagaaa                                                                         <  2:3922914/128‑1 (MQ=255)

                                                          aTTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑‑T‑‑GC‑T‑C‑GT‑‑TTTTTTTTTTTTTTTTT‑‑AAAA‑AAATAT‑ATTTTATTTTTATAAAATTATATTTTTTTTATAAAAAAAAttaaataaaat                                                                         >  2:857464/1‑118 (MQ=255)

                                                           ttGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑‑T‑‑GC‑T‑C‑G‑‑‑TTTTTTTTTTTTTTTTTA‑AAAA‑AAATAA‑AATTTATTTAATTAAAATTATATTTATGTT‑TAATAAAAATTTaaaaaaaatt                                                                       >  1:772832/1‑126 (MQ=255)

                                                               tAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑‑T‑‑GC‑T‑C‑GT‑‑TTTTTTTTTTTTTTTTT‑‑ACAA‑AAATTT‑AATTTATTTTATTAAACTTATATTTATTTT‑TAAATAATATTGAaaagaaatgtaat                                                                   >  2:3379186/1‑122 (MQ=255)

                                                                 aaTTATTTTCAAATCATTATCTATTAATCAATTTTA‑‑T‑‑GC‑T‑C‑GT‑‑TTTTTTTTTTTTTTTTT‑‑AAAA‑AAATAT‑AATTTATTTGATTAAAATTATATTTATTTT‑TAATAAAAATTTAAAATAAAGTAAAttt                                                                 >  1:2346729/1‑127 (MQ=255)

                                                                  attattTTCAAATTATTATATATTAATAAATTTTT‑‑T‑‑TCTT‑T‑T‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAA‑AAATAT‑AATTTATTTGATTAAACGTATATTTATGTT‑TAATAAAAATGGAAAAGAAAGTGAATTGt                                                                <  2:3517645/128‑1 (MQ=255)

                                                                     attTTCAAATCATTATCTATTAATCAATTTTA‑‑T‑‑GC‑T‑C‑GT‑‑TTTTTTTTTTTTTTTTT‑‑AAAA‑AAATAA‑AATTTATTTTATTAAACGTATATTTTTTTT‑TAATAAAAATGTAAAAGAAAGTGATTTGTAat                                                             >  1:718372/1‑128 (MQ=255)

                                                                      ttttTAAATTATTATTTATTTATTAATTTTA‑‑T‑‑TC‑T‑CTT‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAA‑AAATAT‑AATTTATTTGATTAAACGTATATTTATGTT‑TAATAAAAATGGAAAAGAAAGTGAATTGTCata                                                            <  2:3035671/128‑1 (MQ=255)

                                                                      ttttCAAATCATTATCTATTAATCAATTTTA‑‑T‑‑GC‑T‑C‑G‑‑‑TTTTTTTTTTTTTTTTTTAAAAA‑AAATAT‑AATTTATTTTTTTAAACTTATATTTATTTT‑TAATAAAAATGTaaaaaaaatataattttaaa                                                             >  1:1983928/1‑116 (MQ=255)

                                                                       tttCAAATCATTATCTATTAATCAATTTTA‑‑T‑‑GC‑T‑C‑GT‑‑TTTTTTTTTTTTTTTTT‑‑AAAA‑AAATAA‑AATTTTTTTTATTAAAATTTTTTTTTTTTT‑TAATAAAAATTTAAAATAAATTAAATTTtaataa                                                           >  1:3405524/1‑128 (MQ=255)

                                                                       tttCAAATCATTATCTATTAATCAATTTTA‑‑T‑‑GC‑T‑C‑G‑‑‑TTTTTTTTTTTTTTTTT‑‑AAAA‑AAATAT‑AATTTATTTGATTAAAATTATATTTATTTT‑TAATAAAAATGTAAAATAAAGTTAATTTTaataat                                                          >  2:1031680/1‑128 (MQ=255)

                                                                          cAAATCATTATCTATTAATCAATTTTA‑‑T‑‑GC‑T‑C‑GT‑‑TTTTTTTTTTTTTTTTT‑‑AAAA‑AAATAT‑AATTTATTTGATTAAACGTATATTTATGTT‑TAATAAAAATTGAAATTAAATTAAATTTTCataatat                                                        >  1:1347832/1‑127 (MQ=255)

                                                                            aaTCATTATCTATTAATCAATTTTA‑‑T‑‑GC‑T‑C‑GTT‑TTTTTTTTTTTTTTTTT‑‑ACAA‑AAATAT‑AATTTTTTTTATTAAAATTATATTTATTTT‑TAATAAAAATTGAAAATAAATTTAATTGTaataataat                                                       >  1:1272301/1‑128 (MQ=255)

                                                                                aTTATCTATTAATCAATTTTA‑‑T‑‑GC‑T‑C‑GT‑‑TTTTTTTTTTTTTTTTT‑‑AAAA‑AAATAT‑AATTTATTTTATTAAACGTATATTTATGTT‑TAATAAAAATTTAAAACAAAGTTAATTGTCATAAtaatttaat                                                  >  2:1860596/1‑128 (MQ=255)

                                                                                  tatttattAATTAAATTTT‑‑T‑‑TC‑T‑C‑T‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAA‑AAATAT‑AATTTATTTGATTAAACGTATATTTATGTT‑TAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATttaattaa                                               <  2:2991061/128‑1 (MQ=255)

                                                                                    tCTATTAATCAATTTTA‑‑T‑‑GC‑T‑C‑GT‑‑TTTTTTTTTTTTTTTTT‑‑ACAA‑AAATAT‑AATTTATTTTATTAAACGTATATTTATTTT‑TAATAAAAATGAAAAATAAAGTGAATTTTCATAATAATTTAATTaaa                                              >  2:1399945/1‑128 (MQ=255)

                                                                                    tCTATTAATCAATTTTA‑‑T‑‑GC‑T‑C‑GT‑‑TTTTTTTTTTTTTTTTT‑‑AAAA‑AAATAA‑AATTTTTTTTATTAAACTTATATTTATTTT‑TATAAAAATTGAAAAATAAATTTATTTTTAATATTAATTTAATTaaa                                              >  2:3470448/1‑128 (MQ=255)

                                                                                             cAATTTTA‑‑T‑‑GC‑T‑C‑G‑‑‑TTTTTTTTTTTTTTTTTTAAAAA‑AAAAAA‑AATATAATTTATTAAAATAATTTTTTTTTT‑TATTAAAAATGTAAAAAAAATTAAAATTTAATAATAATTAAAataaat‑‑aaataaa                                    >  1:1807414/1‑127 (MQ=255)

                                                                                               aTTTTA‑‑T‑‑GC‑T‑C‑GT‑‑TTTTTTTTTTTTTTTTT‑‑ACAA‑AAATAT‑AATTTATTTTATTAAACGTATATTTTTTTT‑TAATAAAAATGGAAAATAAATTTAATTTTAATAATAATTTAATTAAAT‑‑ATATaaaatt                                 >  1:1403816/1‑124 (MQ=255)

                                                                                                       t‑‑GC‑T‑C‑GT‑‑TTTTTTTTTTTTTTTTT‑‑AAAA‑AAATAT‑AATTTTTTTTATTAAACGTATATTTTTTTT‑TAATAAAAATTTAAAATAAATTTAATTTTAATAAAAATTTAATTAAAT‑‑ATATAAAAATTTattt                           >  1:2186213/1‑125 (MQ=255)

                                                                                                       t‑‑GC‑T‑C‑GT‑‑TTTTTTTTTTTTTTTTT‑‑AAAA‑AAATAT‑AATTTATTTGATTAAACGTATATTTATTTT‑TAATAAAAATGTAAAATAAATTTAATTTTAATAATAATTTAATTAAAT‑‑ATATAAAAATTTaatt                           >  1:2406924/1‑126 (MQ=255)

                                                                                                       t‑‑GC‑T‑C‑G‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAA‑AAATAT‑AATTTATTTTATTAAACGTATATTTATGTT‑TAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAAT‑‑ATTTAAAAATTTAAGtt                          >  1:3977423/1‑128 (MQ=255)

                                                                                                         ttttttttttttttttttttttttttttt‑‑ATAA‑ATATAT‑AATTTATTTTATTAAAAGTATATTTATTTT‑TAATAATAATGGAAAAGATATTGAATTGTAATAATAATTTAATTAAAT‑‑ATATAACAATg                                <  2:524116/116‑1 (MQ=255)

                                                                                                          gC‑T‑C‑GT‑‑TTTTTTTTTTTTTTTTT‑‑AAAA‑AAATAT‑AATTAATTTTATTAAAAGTATTTTTATTTT‑TAATAAAAATTTAAAAAAAATTTAATTTTAATAATAATTAAATTAAAT‑‑ATTTAAAaatttaattt                          >  1:38568/1‑128 (MQ=255)

                                                                                                           c‑T‑C‑G‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAA‑AAATAT‑AATTTATTTGATTAAACGTATATTTATTTT‑TAATAAAAATGGAAAACAAAGTGAATTGTCAAAATAATTTTATTAAAT‑‑AAAAAAAAAATTAAGttta                        >  2:1500435/1‑127 (MQ=255)

                                                                                                            tttttttttttttttttttttttttt‑‑ACAA‑AAATAT‑AATTTATTTGATTAAAAGTATATTTATGTT‑TAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAAT‑‑ATATAACAATGTaa                             <  1:3633466/119‑1 (MQ=255)

                                                                                                            tttgtttttttttttttttttttttt‑‑ACAA‑AAATAT‑AATTTATTTGATTAAAAGTATATTTATGTT‑TAATAAAAATGTAAAAGAAAGTGAATTGTCATAATAATTTAATTAAAT‑‑ATATAACAATGTaa                             <  1:660595/119‑1 (MQ=255)

                                                                                                               ttttttttttttttttttttttt‑‑ATTT‑AAATTT‑TATTTATTTTATTATATGTATATTTATGTT‑TAATAAAAATGGAAAATAAAGTTAATTTTAATAATAATTTAATTAAAT‑‑ATATAACAATGTAAGtt                          <  2:2342896/122‑1 (MQ=255)

                                                                                                               ttttttttttttttttttttttt‑‑ACTA‑AATTAT‑TATTTATTTTATTAAAAGTATATTTATGTT‑TAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAAT‑‑ATATAACAATGTAAGtt                          <  2:2533361/122‑1 (MQ=255)

                                                                                                                 ttttttttttttttttttttt‑‑AAAA‑AATTAT‑ATTTTATTTGATTAAATGTATATTTATGTT‑TAATAAAAATTTAAAAGAAAGTGAATTGTAATAATAATTTAATTAAAT‑‑ATATAACAATGTAAGtttt                        <  2:2416663/124‑1 (MQ=255)

                                                                                                                  tttttttttttttttttttt‑‑ATAA‑AATTTT‑ATTTTTTTTTATTAAATGTATATTTATTTT‑TAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAAT‑‑ATATAACAATGTAAGTTTTa                       <  2:1609198/125‑1 (MQ=255)

                                                                                                                  tttttttttttttttttttt‑‑ACAA‑AAATAT‑AATTTATTTGATTAAACGTATATTTATGTT‑TAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAAT‑‑ATATAACAATGTAAGTTTTa                       <  2:3784721/125‑1 (MQ=255)

                                                                                                                  tttttttttttttttttttt‑‑AAAA‑AAATAT‑AATTTATTTGATTAAACGTATATTTATGTT‑TAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAAT‑‑ATATAACAATGTAAGTTTTa                       <  2:3852367/125‑1 (MQ=255)

                                                                                                                  ttattttttttttttttttt‑‑AAAA‑AAATAT‑AATTTATTTGATTAAACGTATATTTATGTT‑TAATAAAAATGTAAAAGAAAGTGAATTGTAATAATAATTTAATTAAAT‑‑ATATAACAATGTAAGTTTTa                       <  2:1319352/125‑1 (MQ=255)

                                                                                                                   ttttttttttttttttttt‑‑AAAA‑AAATAT‑AATTTATTTGATTAAAAGTATATTTATGTT‑TAATAAAAATTGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAAT‑‑ATATAACAATGTAAGTTTTaa                      <  2:3154469/126‑1 (MQ=255)

                                                                                                                      tttttttttttttttt‑‑TGTT‑TTATTT‑AATTTATTTGATTATAAGTATTTTTTTGTT‑TAATAAAAATTGTATAGAAAGTGAATTGTCATAATTATTTAATTATAT‑‑ATATATCAATGTAAGTTTTAATac                   <  2:1783257/128‑1 (MQ=255)

                                                                                                                      tttttttttttttttt‑‑AAAA‑AAATAT‑AATTTATTTGATTAAAAGTATATTTATGTT‑TAATAAAAATGGAAAAGAAAGTGAATTGTAATAATAATTTAATTAAAT‑‑ATATAACAATGTAAGTTTTAAAac                   <  2:1232099/128‑1 (MQ=255)

                                                                                                                       ttttttttttttttt‑‑ACAA‑AATTAT‑AATTTATTTTATTAAACGTATTTTTTTGTT‑TAATAAAAATTAAAAATAAATTTAATTTTAATAATAATTTAATTAAAT‑‑ATATAAAAATTTAAGTTTAaaaaat                  >  1:3914811/1‑126 (MQ=255)

                                                                                                                        tttttttttttttt‑‑AAAT‑AAATAT‑ATTTTTTTTTATTATAATTATATTTATGTT‑TAATTAAAATTGATAATAATTTTATTTTTATTTATAATTTAATTAAAT‑‑ATATAATAATTTAATTTTTAAAaatt                 <  2:2862216/128‑1 (MQ=255)

                                                                                                                         ttttttttttttt‑‑ACAA‑AAATAT‑AATTTATTTGATTAAACGTATATTTATGTT‑TAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAAT‑‑ATATAACAATGTAAGTTTTAAAactta                <  1:3318040/128‑1 (MQ=255)

                                                                                                                           ttttttttttt‑‑ACAT‑AATTAT‑AATTTATTTGATTAAACGTATATTTATGTT‑TAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAAT‑‑ATATAACAATGTAAGTTTTAAAacttact              <  1:3350417/128‑1 (MQ=255)

                                                                                                                            tttttttttt‑‑AATA‑TAATAT‑AATTTATTTGATTATAAGTATATTTATGTT‑TAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATAAAAACAAAAAAGTAAGTTTTAAAacttac               <  1:1064869/128‑1 (MQ=25)

                                                                                                                              tttttttt‑‑ACAA‑TAATAT‑AATTTATTTGATTAAACGTATATTTATGTT‑TAATAAATATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAAT‑‑ATATAACAATGTAAGTTTTAAAACTTACtttt           <  1:1132361/128‑1 (MQ=255)

                                                                                                                              tttttttt‑‑AAAA‑AAATAT‑AATTTATTTGATTAAACGTATATTTATGTT‑TAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAAT‑‑ATATAACAATGTAAGTTTTAAAACTTACtttt           <  2:1157469/128‑1 (MQ=255)

                                                                                                                              tttttttt‑‑AAAA‑AAATAT‑AATTTATTTGATTAAAAGTATATTTATGTT‑TAATAAAAATGGAAAAGAAAGTGATTTGTCATAATAATTTAATTAAAT‑‑ATATAACAATGTAAGTTTTAAAACTTACtttt           <  2:2091352/128‑1 (MQ=255)

                                                                                                                               ttttttt‑‑ACAA‑AAATAT‑AATTTATTTGATTAAAATTATATTTATGTT‑TAATAAAAATGTAAAAGAAAGTGAATTGTCATAATAATTTAATTAAAT‑‑ATATAACAATGTAAGTTTTAAAACTTACttttt          <  1:3521371/128‑1 (MQ=255)

                                                                                                                                 ttttt‑‑AAAA‑AAATAT‑AATTTATTTGATTAAAAGTATTTTTATGTT‑TAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAAT‑‑ATATAACAATGTAAGTTTTAAAACTTACTTTTTTg        <  1:2566580/128‑1 (MQ=255)

                                                                                                                                  tttt‑‑AAAA‑AAATAT‑ATTTTATTTTATTAAACTTTTATTTATGTT‑TAATAAAAATTGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAAT‑‑ATATAACAATGTAAGTTTTAAAACTTACTTTTTTGt       <  2:1999766/128‑1 (MQ=255)

                                                                                                                                  tttt‑‑AAAA‑AAATAT‑AATTTATTTGATTAAACGTATATTTTTGTT‑TAATAAAAATGGAAAAGAAAGTGAATTGTAATAATAATTTAATTAAAA‑‑ATATAACAATTTAATTTTTAAAAATTAAtttttttt       >  2:3186078/1‑126 (MQ=255)

                                                                                                                                    tt‑‑AAAA‑ATATAT‑AATTTATTTGATTAAAATTATATTTATGTT‑TAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAAT‑‑ATATAACAATGTAAGTTTTAAAACTTACTTTTTTGttt     <  2:683617/128‑1 (MQ=255)

                                                                                                                                        aCAA‑TAATAT‑AATTTATTTGATTAAAAGTATATTTATGTT‑TAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAAT‑‑ATATAACAATGTAAGTTTTAAAACTTACTTTTTTGttttt   <  1:3054525/128‑1 (MQ=255)

AAAACTACTAGCACTTTTTTAAAAAATTTAAAATTAAAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTA‑‑T‑‑GC‑T‑C‑G‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAA‑AAATAT‑AATTTATTTGATTAAACGTATATTTATGTT‑TAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAAT‑‑ATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTA  >  CP016816/420128‑420380

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`