Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816202,4810CA36.8% 262.2 / 53.0 310intergenic (+259/‑416)JCVSYN2_00840/JCVSYN2_00845hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand):  ref base C (94/85);  new base A (36/68);  total (140/170)
Fisher's exact test for biased strand distribution p-value = 4.38e-03
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 366 total aligned reads displayed.

AGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTTTTAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATC  >  CP016816/202354‑202597
                                                                                                                                |                                                                                                                     
agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATc                                                                                                                       >  2:2330864/1‑128 (MQ=255)
agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATc                                                                                                                       <  2:1425403/128‑1 (MQ=255)
 gtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCACAAAT‑AAAAAAAAAACAATca                                                                                                                      >  2:324719/1‑127 (MQ=255)
 gtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATcc                                                                                                                      >  2:3999536/1‑128 (MQ=255)
 gtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATcc                                                                                                                      <  2:848825/128‑1 (MQ=255)
 gtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCAATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATcc                                                                                                                      <  1:749080/128‑1 (MQ=255)
  tttatttattttAAATAATTTAGTTTATGTTAATTAAAATAACATAAATTTAATAATTATTATAATTTATATACTAGTTTTTTTTTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAACAATcc                                                                                                                      <  2:86849/117‑1 (MQ=255)
  tGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATccc                                                                                                                     <  1:2275202/128‑1 (MQ=255)
    aaGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAA‑AAAAAAAAAACAATCCCCt                                                                                                                   >  2:3528406/1‑128 (MQ=255)
     aGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAATcaacta                                                                                                                  >  2:3578690/1‑123 (MQ=255)
     aGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCACCtt                                                                                                                  >  1:3116950/1‑128 (MQ=255)
      gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATACCCtta                                                                                                                 >  2:3467963/1‑127 (MQ=255)
       ttAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATCCTATTGATCTATTTTTTTATTTGTTTATATTAACAAAT‑AAAAAAAAAACAATcaaattaa                                                                                                                >  1:3444997/1‑121 (MQ=255)
       ttAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAATcccaataa                                                                                                                >  2:3934494/1‑123 (MQ=255)
       ttAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATATTCACAAAT‑AAAAAAAAAACAATcaccataa                                                                                                                >  2:1078498/1‑124 (MQ=255)
         aGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATACTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTATATATCTTCACAAAT‑AAAAAAAAAACAATCCCAttaaaa                                                                                                              >  2:1008373/1‑124 (MQ=255)
          gtgtAAATAATAGAGTTAAGGTTAATTAAAATAACATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTATTTATCTTCACAAAT‑AAAAAAAAAAAAATAACCttaaaaa                                                                                                             >  2:1477802/1‑123 (MQ=255)
            gtAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATATTCACAAAT‑AAAAAGAAAACAATACACttaaaaatt                                                                                                           >  1:937581/1‑121 (MQ=255)
               aataatAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCttaaaaattaaa                                                                                                        >  2:3283262/1‑118 (MQ=255)
                 taataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCAC‑‑Attaaa‑aattaaaaa                                                                                                   >  1:3317224/1‑128 (MQ=255)
                 taataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAACCACtt‑‑‑aa‑aaataaaaaa                                                                                                  >  2:3632105/1‑128 (MQ=255)
                  aataTATTTAATGTTAATTAAAATAAAATAAAATTAATAATTATTAAAATTTATATCCACGTTATCTATTTTTTTATTTTTTTATATTCAAAAAA‑AAAAAAAAAACAATCCCC‑‑Ttaaa‑aattaaaaaa                                                                                                  <  1:2426007/128‑1 (MQ=255)
                    taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCACC‑‑TTAAA‑AATTaaaaaaaa                                                                                                >  2:3830344/1‑128 (MQ=255)
                    taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAACAC‑‑‑ATAAA‑AAATaaaaaaaaa                                                                                               >  2:2255460/1‑128 (MQ=255)
                     agagTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AATTaaaaaaaaa                                                                                               >  2:3382205/1‑128 (MQ=255)
                        gTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAACCCATTAaaaa‑aaaaaaaaaaaaaa                                                                                              >  2:2567394/1‑128 (MQ=255)
                         ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTTTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCAATaaaaa‑aaaaaaaaaaaaaaa                                                                                             >  2:320945/1‑128 (MQ=255)
                         ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTACACAAAT‑AAAAAAAAAACAAACCCC‑‑‑TAAA‑AAATaaaaaaaaaaaaaa                                                                                          >  2:3780986/1‑128 (MQ=255)
                         ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAACTTAACAAAT‑AAAAAAAAAAAAAAACC‑‑ATAAAA‑AAATaaaaaaaaaaaaa                                                                                           >  2:349852/1‑128 (MQ=255)
                         ttAAGGTTAATTAAAATACAATAAACTTAATAATTCTTATAATGTAGATCCTCTTTATCTATTTTTTTATTTTTTTATATTAACAAAT‑AAAAAAAAAAAAATAAACTTaaaaa‑aaaaaaaaaaaaaaa                                                                                             >  1:1292498/1‑128 (MQ=255)
                          tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaa                                                                                          >  1:3167772/1‑128 (MQ=255)
                          tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAACAATCACC‑‑TTAAA‑AATTaaaaaaaaaaaaaaa                                                                                         >  2:3690617/1‑128 (MQ=255)
                          tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCATCGTGATCTATTTTTTTATTTTTTTATCTTCACAAAT‑AAAAAAAAAA‑AATCCC‑‑AATAAA‑AATTaaaaaaaaaaaaaaa                                                                                         >  2:3310092/1‑128 (MQ=255)
                           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATTTATATAATCGTGATCTATTTATATATTTATTTATATTAACAAAT‑AAAAAAAAAAAAAT‑‑AAAATTAAA‑AATTaaaaaaaaaaaaaaa                                                                                         >  2:5655/1‑128 (MQ=255)
                           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATAATCATAATCTATTTTTTTATTTATTTATAATCACAAAA‑AAAAAAAAAACAA‑‑AAAAATAAAA‑AAATaaaaaaaaaaaaaaa                                                                                         >  2:2359863/1‑128 (MQ=255)
                           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaa                                                                                         >  2:1297731/1‑128 (MQ=255)
                           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCACCTT‑‑‑AA‑AAATaaaaaaaaaaaaaaaa                                                                                        >  2:3965543/1‑128 (MQ=255)
                           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCAAC‑‑TTAAA‑AAATaaaaaaaaaaaaaaa                                                                                         >  2:1242994/1‑128 (MQ=255)
                           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAACCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaa                                                                                         >  2:3145997/1‑128 (MQ=255)
                           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATATTAACAAAT‑‑AAAAAAAAACAATAAACTT‑‑‑AA‑AAATaaaaaaaaaaaaaaaaa                                                                                       >  2:2915/1‑128 (MQ=255)
                           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAATTGTAAATCTTAACAAAA‑AAAAAAAAAACAAACCAC‑‑TAAAA‑AAATaaaaaaaaaaaaaaa                                                                                         >  1:3094170/1‑128 (MQ=255)
                            aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCACC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaa                                                                                        >  2:2066477/1‑128 (MQ=255)
                             ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTAACAAAT‑AAAAAAAAAACAATACCATT‑‑‑AA‑AAATaaaaaaaaaaaaaaaaaa                                                                                      >  1:2551337/1‑128 (MQ=255)
                              tttaattaaAATAAAATAAATTTAATAATTATTAAAAATTATTACAAAGTTATCTATTTTTTTATTTTTTTAAATTAAAAAAT‑AAAAAAAAAACAAACCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaaaa                                                                                      <  1:159141/127‑1 (MQ=255)
                              gTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTATATATTTGTTTATCTTCACAAATAAAAAAAAAAACAATCCC‑‑‑ATAAA‑AAATaaaaaaaaaaaaaaaaaa                                                                                      >  1:3577102/1‑128 (MQ=255)
                               ttaattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAATT‑AAAAAAAAAACAAAACCC‑‑‑TAAA‑AAATaaaaaaaaaaaaaaaaaaaa                                                                                    >  1:3396844/1‑128 (MQ=255)
                                 aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAAAAAT‑AAAAAAAAAAAAATCAC‑‑ATTAAA‑AATTaaaaaaaaaaaaaaaaaaaaa                                                                                   >  1:3367581/1‑128 (MQ=255)
                                 aattaaAATACCATAAACTTAATAATTCATATAATGTATATCATCGTAAACTATTTTTTTATTTGATAATCTTCACAAAT‑AAAAAAAAAACAAAAAAC‑‑‑TAAA‑AAATaaaaaaaaaaaaaaaaaaaaaa                                                                                  >  2:1573001/1‑127 (MQ=255)
                                  attaaAATAAAATAAAATTTATAATTTATATAATTTTAATACACCTTTTTAATTTTTTTTTTTTTTTAAATTAACAAAA‑AAAAAAAAAAAAAACCCC‑‑ATAAA‑AATTaaaaaaaaaaaaaaaaaactaa                                                                                  <  1:4002832/128‑5 (MQ=255)
                                    taaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAACCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaaaaaaaaaa                                                                                >  2:449207/1‑125 (MQ=255)
                                    taaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTAATTTATTAGATTATCTTCACAAAT‑AAAAAAAAAAAAAAAAC‑‑‑ATAAA‑AAATaaaaaaaaaaaaaaaaaaaaaaaaa                                                                               >  2:2679465/1‑124 (MQ=255)
                                    taaAATAACATAAAATTAATTAATATTAAAAATTATAAACACGTTATCTATTTTTTTATTTTTTTATATTAAAAAAA‑AAAAAAAAAAAAAACCCCTT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTaa                                                                               <  1:3780986/128‑1 (MQ=255)
                                     aaaaTACAATAAACTTAATAATTATTATAATGTATATACTCGTGATCTATAATTTTATATTTTAATCATCACAAAT‑AAAAAAAAAAAAA‑‑AAAAAATAAA‑AATTaaaaaaaaaaaaaaaaaaaaaaaaa                                                                               >  1:3069347/1‑124 (MQ=255)
                                      aaaTACCATAAACTTAATAATTCTTATAATTTAGATCATCGTGATCAAATATATTAATAATATATCTTCACAAAT‑AAAAAAAAAACAAAACCATTAAAAA‑Taaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                >  1:1674007/1‑125 (MQ=255)
                                      aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                              >  1:3464418/1‑123 (MQ=255)
                                      aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAA‑AAAAAAAAAAAAAAAACC‑CTAAAA‑AATTaaaaaaaaaaaaaaaaaaaaaaaaa                                                                               >  2:2719492/1‑124 (MQ=255)
                                        aTACCATAAAATTAAAAATTCTTTTAAATTTCTTCCTCGTTTTCTATTTTTTTATTTTTTTTTATTAAAAAAA‑AAAAAAAAAAAAATCCCC‑TTAAAA‑ATTAAAAAAAAAAAAAAAAAAAAAACTaaaa                                                                             <  2:3055489/128‑1 (MQ=255)
                                         tACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATATTTTTATATGTTTATCTTCACAAAT‑AAAAAAAAAAAAAACCCATAATAAA‑TTA‑AAAAAAAAAACAAAAAAAAAAATaaaac                                                                            >  2:2115890/1‑127 (MQ=255)
                                            cATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaaacaaaaaacaaaacat                                                                        >  2:412016/1‑117 (MQ=255)
                                             aTAAACATAAAAATACATAAAATTTACACCCCCCTGATCAATTTTTTTATTTGTTTATCTTCACAAAA‑AAAAAAAAAACAATCCCCTTAAAAA‑TTAAAAAAAAAAAAAAAAAAAAAAACTAAaaacaa                                                                         <  1:1568215/128‑1 (MQ=255)
                                               taatatataaatTATTATAATTTATATTCTGTTTATATTTATTTTTTTTTTTTTATAATCACAAAA‑AAAAAAAAAAAAAACCCCTT‑‑‑AA‑AAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                   <  2:952887/119‑1 (MQ=255)
                                               aaaattaaaaattaTAATAATGTATATCCACTTTAACTATTTTTTTATTTTTTTATATTAACAAAA‑AAAAAAAAAAAAAACCCCTT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                   <  1:184692/128‑1 (MQ=255)
                                                aaattAAAAATTCTTATAAATTTTATACTAGTTTTTTATTTTTTTTTTTTTTTATATTCAAAAAA‑AAAAAAAAAAAAAAACCC‑‑TTAAA‑AAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                   <  2:374099/125‑1 (MQ=255)
                                                 aattAATAAATAATATAATTTATATCCTTGTGATATATTTTTTTATTTTTTTAATTTAAAAAAA‑AAAAAAAAAACAAACCCCTT‑‑‑AA‑AAAT‑‑‑TAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTc                                                               <  1:3528385/126‑1 (MQ=255)
                                                      taaaaatttATAATTTTAATACTCTTCATATATTTTTTTTATTTTTAATATTCACAAAA‑AAAAAAAAAAAAAAACCC‑ATAAAA‑AATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTc                                                               <  1:218034/121‑1 (MQ=255)
                                                        aatTATTAAAATTTATATATTCGTTTTATATTTTTTTATTTTTATATCTTAAAAAAA‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTaa                                                           <  1:599561/128‑1 (MQ=255)
                                                          ttaatataATTTATATACAAGTTATATATTTTTTTATTTTTTTAAATTAAAAAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTaaa                                                          <  1:3634091/124‑1 (MQ=255)
                                                           tattATAATTTATATACTATTGATATATTTTTTTATTTTTTTATATTCAAAAAT‑‑AAAAAAAAACAATACCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAAt                                                        <  1:1434394/126‑1 (MQ=255)
                                                                 aaTTTATATCCTCGTGATATATTTTTTTATTTTTTTATATTAAAAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCt                                                   <  1:548923/128‑1 (MQ=255)
                                                                  aattatattaatgTGATTTATTTTTTTTTTTTTTTTAATTAAAAAAA‑AAAAAAAAAAAAAAACCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCta                                                  <  1:3893631/116‑1 (MQ=255)
                                                                   tGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATc                                                                                                                       >  1:810038/1‑61 (MQ=255)
                                                                      aaataactatGATATATTTTTTTATTTTTTTTAAATTAAAAAA‑AAAAAAAAAAAAAAACCC‑ATAAAA‑AATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtatta                                               <  1:2066736/119‑1 (MQ=255)
                                                                          tcttttttttttttttttttttttttTATATTAAAAAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                          <  2:3864658/116‑1 (MQ=255)
                                                                             agttttattttttttttttttttAAAATTAAAAAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAA‑AAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                      <  2:310200/119‑1 (MQ=255)
                                                                               ttatttttttttttatttttttaTAAT‑AAAAAT‑ATAAAAAAAAAAAAATTCATTT‑AA‑AATTAAAAAATAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                     <  2:1921120/121‑1 (MQ=255)
                                                                               ttatttatttttttattttttTATAAAAAAAAAT‑AAAAAAAAAAAAAT‑ACAATTAAAA‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                      <  1:2638218/123‑1 (MQ=255)
                                                                               ttatatatttttttattttttTATAATAAAAAAA‑AAAAAAAAAAAAAAACCC‑‑TTAAA‑AAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                    <  1:3960216/123‑1 (MQ=255)
                                                                                ttattatatttttatattttTATTTTAAAAAAA‑AAAAAAAAAAAAATAACC‑AATAAA‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                     <  1:2816294/124‑1 (MQ=255)
                                                                                  ttatttttttttttttttTATAAATAAAAAA‑AAAAAAAAAAAAAAACCC‑‑TTAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttat                                  <  1:1792675/124‑1 (MQ=255)
                                                                                   tattttttttatttttttaTATTAAAAAAA‑AAAAAAAAAAAAAATCCATT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatcttatttt                               <  1:2359863/125‑1 (MQ=255)
                                                                                    tattttttatttttTTTATATTAAAAAAA‑AAAAAAAAAAAAATCCCATT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                               <  1:3589814/128‑1 (MQ=255)
                                                                                    tATTTTTATATTTTTTTTTATAAAAAAAA‑AAAAAAAAAAAAAACCC‑‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                               <  1:2702999/128‑1 (MQ=255)
                                                                                      attttttaattttttaaAATCAAAAAA‑AAAAAAAAAAAAATACAC‑TTAAAA‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                               <  1:1177988/127‑1 (MQ=255)
                                                                                        tttttATTTTTTTATATTAAAAAAA‑AAAAAAAAAAAAATTCCCTTAAAAATAAAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                               <  1:1058733/128‑1 (MQ=255)
                                                                                         tttatttttttTATATTAAAAAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                           <  1:3253134/123‑1 (MQ=255)
                                                                                             aTTTTTTTATTTTAAAAAAT‑TAATAAAAAAAAATTCCCTTT‑‑AA‑AAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAg                      <  1:1498689/128‑1 (MQ=255)
                                                                                             aTTTTTTTAATTTAAAAAAT‑AAAAAAAAAAAAATAACC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                       <  1:2246218/128‑1 (MQ=255)
                                                                                              ttttttTATATTAAAAAAA‑AAAAAAAAAAAAAACCCC‑TTAAAA‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                       <  1:1979354/128‑1 (MQ=255)
                                                                                                 ttttATATTTAAAAAA‑AAAAAAAAATAAATACCC‑‑TTAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                   <  2:3070025/127‑1 (MQ=255)
                                                                                                  tttATATTAAAAAAA‑AAAAAAAAAAAAATACCC‑TTAAAA‑ATAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                   <  1:2995693/128‑1 (MQ=255)
                                                                                                   ttATATTAAAAAAT‑AAAAAAAAAAAAATCCACTTAAAAA‑TTAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                   <  1:3145997/128‑1 (MQ=255)
                                                                                                    ttaattaaaaaaT‑AAAAAAAAAAAAATAACC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTg                <  2:3904721/119‑1 (MQ=255)
                                                                                                     aaaataaaaaaa‑aaaaaaaaaaaaATACACA‑‑TAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGa               <  1:794742/120‑1 (MQ=255)
                                                                                                       tttaaaaaaa‑aaaaaaaaaaaaATAACCTAAAAAA‑AATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGa               <  2:3454795/122‑1 (MQ=255)
                                                                                                        ttaataaaT‑AAAAAAAAAAAAATAACC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACat            <  1:449207/123‑1 (MQ=255)
                                                                                                        ataacaAAA‑AAAAAAAAAAAAAT‑ACCATTAAAA‑AATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa             <  1:3730128/125‑1 (MQ=255)
                                                                                                        ataaaaaaa‑aaaaaaaaaaaaATACACTTAAAAA‑TTAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGAc              <  1:2022277/123‑1 (MQ=255)
                                                                                                         taaaaaaT‑AAAAAAAAAAAAATAAC‑‑ATTAAA‑AATTAAAAAAAAAAAAAAAAAAAAAATAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACata           <  1:2041705/124‑1 (MQ=255)
                                                                                                                  aaaaaaaaaaaaAT‑ACCTTTT‑‑A‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATc  <  1:1026002/128‑1 (MQ=255)
                                                                                                                    aaaaaaaaaaATACCC‑TTTAAA‑AATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATc  <  1:1383230/128‑1 (MQ=255)
                                                                                                                                |                                                                                                                     
AGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTTTTAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATC  >  CP016816/202354‑202597

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑