New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP034943	= 3426096	315 (1.000)	3 (0.010) +ACGGAACGGC	3/232	NT	1.1%	intergenic (‑120/+217)	ctpB/ftsX	carboxy‑terminal processing protease CtpB/permease‑like cell division protein FtsX
	?	NZ_CP034943	3426305 =	290 (0.920)					intergenic (‑329/+8)	ctpB/ftsX	carboxy‑terminal processing protease CtpB/permease‑like cell division protein FtsX
Rejected: Frequency below/above cutoff threshold.

AAAACCTAGAGATAGTATATGTAAAGGATGGAGATTTCATGTAATCATAGAAGAAAAAGAAGGCAAAAGAAAAGCCGCCCCGAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NZ_CP034943/3426012‑3426096 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTTTC‑TTTTATACTCGCAGAAACTTGCGGATGGAAGTCAGACTTCCCCATACTCCAATTACTGCGCCGATTGCAACAAGCACTAACGAAATTTGGAATACAAATG  >  NZ_CP034943/3426305‑3426410                                                                                      ||||||||||                                                                                                            AAAACCTAGAGATAGTATATGTAAAGGATGGAGATTTCATGTAATCATAGAAGAAAAAGAAGGCAAATGAAAAGCCGTCCCGAAAACGGAACGGCTTTTTCACTTTATACTCGCAGAAACTTGCGGATGGAAGT                                                                      <  1:569948/134‑1 AAAACCTAGAGATAGTATATGTAAAGGATGGAGATTTCATGTAATCATAGAAGAAAAAGAAGGCAAATGAAAAGCCGTCCCGAAAACGGAACGGCTTTTTCACTTTATACTCGCAGAAACTTGCGGATGGAAGT                                                                      >  2:569948/1‑134                                                               GCAAATGAAAAGCCGTCCCGAAAACGGAACGGCTTTTTCACTTTATACTCGCAGAAACTTGCGGATGGAAGTCAGACTTCCCCATACTCCAATTACTGCGCCGATTGCAATCAGCACTAGCGAAACTTGGAATACAAATG  <  1:5031668/140‑1                                                                                      ||||||||||                                                                                                            AAAACCTAGAGATAGTATATGTAAAGGATGGAGATTTCATGTAATCATAGAAGAAAAAGAAGGCAAAAGAAAAGCCGCCCCGAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NZ_CP034943/3426012‑3426096 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTTTC‑TTTTATACTCGCAGAAACTTGCGGATGGAAGTCAGACTTCCCCATACTCCAATTACTGCGCCGATTGCAACAAGCACTAACGAAATTTGGAATACAAATG  >  NZ_CP034943/3426305‑3426410

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.