BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4542691	89 (0.830)	4 (0.040)	4/278	16.5	4.1%	intergenic (+57/‑425)	fimE/fimA	tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
*	?	NC_000913	= 4542987	103 (1.020)	4 (0.040)	4/278	16.5	4.1%	intergenic (+353/‑129)	fimE/fimA	tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 112 total aligned reads displayed.

TCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACAT‑CTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAACTCTGG  >  NC_000913/4542840‑4543134

tgcgaggCCCGGCGCATCTTCCTCATTCTTCTATCCAAAAACCACCTCATGCAATATAAACAT‑CTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAt                                                                                                                                                    <  1:178517/144‑1 (MQ=255)

   gtgGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACAT‑CTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGc                                                                                                                                                 <  1:898685/149‑1 (MQ=255)

   gtgGCTCGACGCATCTTCCTAATTCTTCTCCCCAAAAACCACATCATGAAATATAAAAAC‑CTATAAATCAAGATAACAAAAGAATATTAAGGCAACAAATAAACTGAAAAAGTTTGTACGCGACGCTTTCCTCTATGAGTCaaaagagc                                                                                                                                                 >  2:1177425/1‑145 (MQ=255)

      gCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACAT‑CTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCTATGCCTTCCTCTATGAGTCAAAATGGcccc                                                                                                                                              <  1:922189/149‑1 (MQ=255)

       cTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACAT‑CTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCa                                                                                                                                             >  2:1203514/1‑149 (MQ=255)

       cTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACAT‑CTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCa                                                                                                                                             >  2:1152672/1‑149 (MQ=255)

        tCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACAT‑CTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCaa                                                                                                                                            <  1:1717338/149‑1 (MQ=255)

          gACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACAT‑CTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCaatt                                                                                                                                          <  1:544425/149‑3 (MQ=255)

          gACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACAT‑CTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAAt                                                                                                                                          >  1:516694/1‑149 (MQ=255)

          gACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACAT‑CTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAAt                                                                                                                                          <  1:304508/149‑1 (MQ=255)

           aCGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACAT‑CTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATg                                                                                                                                         >  1:837095/1‑149 (MQ=255)

                 cTTCCTCATTCTTCTCTCC‑AAAACCACCTCATGCAAGATAAACAT‑CTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTAGTCCGCGATGCTTTCCTCTAGGAGTCAAAATGGACCCAAATGTTTCATc                                                                                                                                  >  2:712790/1‑149 (MQ=255)

                      tCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACAT‑CTATAAATAAAGATAACAATAGCATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCtttt                                                                                                                              <  1:1337058/149‑1 (MQ=255)

                      tCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACAT‑CTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCtttc                                                                                                                              >  1:396629/1‑148 (MQ=255)

                       cATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACAT‑CTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAGGGCGCGAAATGTTTCATCTTTTg                                                                                                                             >  1:123462/1‑149 (MQ=255)

                        aTTCTTCTCTCCAATAACCACCTCACGCAATATCAACAT‑CTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAACCTGAACAAGTTTGTCCGCGATGCTTTCCTCTATGAGTTAAAATGGCCCCAAATGTTTCATCTTTTgg                                                                                                                            <  1:1088296/149‑1 (MQ=255)

                        aTTCTTCTCTCCAAAAACCACCTCATGCAATATAAACAT‑CTATAAATACAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATAGGTGAAAATGGCCCCAAATGTTTCATCTTTTgg                                                                                                                            >  2:923539/1‑149 (MQ=255)

                        aTTCTTCTCTCCAAAAACCACCTCATGCAATATAAACAT‑CTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTgg                                                                                                                            <  1:94965/149‑1 (MQ=255)

                        aTTCTTCTCTCCAAAAACCACCTCATGCAATATAAACAT‑CTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTgg                                                                                                                            >  2:956347/1‑149 (MQ=255)

                          tcttctCTCCAAAAACCACCTCATGCAATATAAACAT‑CTATAAATAAATATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTgggg                                                                                                                          <  1:189090/149‑1 (MQ=255)

                             tctctcCAAAAACCACCTCATGCAATAT‑ACCATGTTGAAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGaa                                                                                                                       >  1:1315174/1‑149 (MQ=255)

                               gcgccAAAATCCACCTCATCCAATATAAACAT‑CGATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGaaaa                                                                                                                     <  2:1306434/146‑1 (MQ=255)

                                ctcCAAAAACCACCTCATGCAATATAAACAT‑CTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAAc                                                                                                                    >  2:271403/1‑149 (MQ=255)

                                ctcCAAAAACCACCTCATGCAATATAAACAT‑CTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAAc                                                                                                                    >  1:344269/1‑149 (MQ=255)

                                 tcCAAAAACCACCTCATGCAATATAAACAT‑CTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACt                                                                                                                   <  1:1143584/149‑1 (MQ=255)

                                 tcCAAAAACCACCTCATGCAATATAAACAT‑CTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTAGGGGGCAAACt                                                                                                                   >  1:272625/1‑149 (MQ=255)

                                 ccccaaaaCCACCTCATGCAATATAAACAT‑CTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACt                                                                                                                   <  2:337706/145‑1 (MQ=255)

                                   cAAAAACCACCTCATGCAATATAAACAT‑CTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACtgt                                                                                                                 <  2:113505/149‑1 (MQ=255)

                                   cAAAAACCACCTCATCCAATATAAACAT‑CTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACtgt                                                                                                                 <  2:720229/149‑1 (MQ=255)

                                    acagcgcactTCATCGAATAGAAACAT‑GAAAAAATAAAGTGTACAATAGAATATTAAGCAAACAAATAAACTGAAAAAGGTTGGCCGCGATGCTTTCTTCTATTCGTGAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACtgtg                                                                                                                <  2:1176418/143‑1 (MQ=255)

                                      aaaCCACCTCATGCAATATAAACAT‑CTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCa                                                                                                              <  1:1524481/149‑1 (MQ=255)

                                        accaccTCATGCAATATATCCAT‑CTATAAATAAGGATAACAATAGAATAGTAAGCAAAAAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTAATCTTTTGGGGGAAAACTGTGCAgc                                                                                                            >  1:1308296/1‑148 (MQ=255)

                                        accaccTCATGCAATATAAACAT‑CTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAgt                                                                                                            <  1:1771518/149‑1 (MQ=255)

                                           cccTCATGCAATATAAACAT‑CTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGtt                                                                                                         <  2:1688404/148‑1 (MQ=255)

                                           accTCATGCAATATAAGCAT‑CTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGtt                                                                                                         <  2:325960/149‑1 (MQ=255)

                                            ccgcATGCAATATAACCAT‑CTACAAATAAAGATAACAACAGGATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTg                                                                                                        <  1:82207/146‑1 (MQ=255)

                                            ccTCATGCAATATAAACAT‑CTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTCTGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTg                                                                                                        <  2:1175158/149‑1 (MQ=255)

                                             cTCATGCAATATAAACAT‑CTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTgg                                                                                                       <  2:1360498/149‑1 (MQ=255)

                                              tCATGCAATATAAACAT‑CTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGc                                                                                                      >  2:141700/1‑149 (MQ=255)

                                              tCATGCAATATAAACAT‑CTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTAAAAATGGCCCCAAATGTTTCATCTTTTGGGGGTGAAATCTGCGGTGTTGGc                                                                                                      >  2:1738060/1‑149 (MQ=255)

                                                 ttcAATATAAACAT‑CTATAAAGAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGt                                                                                                   <  1:1515242/147‑1 (MQ=255)

                                                 tGCAATATAAACAT‑CTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGTAGTGTTGGCAGt                                                                                                   <  1:540725/149‑1 (MQ=255)

                                                     atatAAACAT‑CTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCcaa                                                                                               >  2:785211/1‑149 (MQ=255)

                                                     atacAAACAG‑CAATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCTAAAGGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCaaa                                                                                               <  2:299288/149‑1 (MQ=255)

                                                           aCAT‑CTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGtt                                                                                         >  2:300886/1‑149 (MQ=255)

                                                             aT‑CTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATAAGTCAAAATGGCCCCAAAGGTTTCATCTCTTGGGGGAAAACTGTGCAGGGTTGGCAGTCAAACTCGTTTa                                                                                       >  2:1571766/1‑149 (MQ=255)

                                                                 tataAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaa                                                                                    <  1:1199024/149‑1 (MQ=255)

                                                                 tataAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaa                                                                                    <  1:1198893/149‑1 (MQ=255)

                                                                  ataaataaAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACAGTGCAGTGTTGGCAGTCAAACTCGTTTacaaa                                                                                   >  2:1332716/1‑149 (MQ=255)

                                                                  aaaaaaaaaGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaa                                                                                   <  2:1026157/147‑1 (MQ=255)

                                                                       taaaGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTATCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaacaaa                                                                              >  2:119372/1‑149 (MQ=255)

                                                                       caaaGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTATCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAAATGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaacaaa                                                                              >  2:1305795/2‑149 (MQ=255)

                                                                          aGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAgtg                                                                           <  2:1143338/149‑1 (MQ=255)

                                                                            aTAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTa                                                                         <  1:977424/149‑1 (MQ=255)

                                                                                 caTAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATTTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGGTTACAAAACAAAGTGTACAGaa                                                                    <  1:1051714/148‑1 (MQ=255)

                                                                                 aaTAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAACACAAAATGTACAGaa                                                                    >  1:1683592/1‑149 (MQ=255)

                                                                                 aaTAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGaa                                                                    >  1:1283108/1‑149 (MQ=255)

                                                                                  aTAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAAc                                                                   >  1:927501/1‑149 (MQ=255)

                                                                                    aGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGa                                                                 >  1:1600287/1‑149 (MQ=255)

                                                                                     gAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGAc                                                                <  1:956347/149‑1 (MQ=255)

                                                                                       atatTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTg                                                              <  1:271403/149‑1 (MQ=255)

                                                                                           tAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCACAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCa                                                          >  2:295504/1‑149 (MQ=255)

                                                                                           tAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCa                                                          >  1:1030184/1‑149 (MQ=255)

                                                                                           tAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTACCCa                                                          >  2:1641981/1‑149 (MQ=255)

                                                                                                 aacaaATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCCGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTAGAGAACGACTGCCCATGTcat                                                    >  2:186301/1‑147 (MQ=255)

                                                                                                  acaaATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACGACGTGTACAGAAAGACTGCCAATGTCGAt                                                   >  2:328436/1‑149 (MQ=255)

                                                                                                   cacaTAAACTGAAAAAGTTTGCCCGCGATGCTTTCCTCTATGGGTCAAAATTGCCCCAGATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAATAAAGTGTACAGAACGACTGCCCATGTCGAtt                                                  <  2:322445/146‑1 (MQ=255)

                                                                                                    aaaTCAACTGAAAAATCTGTTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACCGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGAttt                                                 <  1:48558/149‑1 (MQ=255)

                                                                                                    aaaTAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCCAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGAttt                                                 <  1:1475237/149‑1 (MQ=255)

                                                                                                    aaaTAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGAttt                                                 >  2:84960/1‑149 (MQ=255)

                                                                                                      aTAAACTGAAAAAGTTTGTCCGCGATGCCTTACGCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTaa                                               >  1:433315/1‑148 (MQ=255)

                                                                                                             gAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGt                                        >  1:1774145/1‑149 (MQ=255)

                                                                                                              aaaaaGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGtt                                       >  1:970496/1‑149 (MQ=255)

                                                                                                                 aaGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGttttt                                    >  1:1371795/1‑149 (MQ=255)

                                                                                                                  aGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGtttttt                                   <  1:789655/149‑1 (MQ=255)

                                                                                                                  aGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGtttttt                                   <  1:762616/149‑1 (MQ=255)

                                                                                                                  aGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGtttttt                                   <  1:1325636/149‑1 (MQ=255)

                                                                                                                   gTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTg                                  <  1:1264685/149‑1 (MQ=255)

                                                                                                                   gTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCACAAAGTTTCCTCTTTTGGGGAAAAACTGAGCAGTAATGGCAGTCAACCTCGTATGCACAAAAAGGTGTACGAAACGACTGAACAAGTTGTTTTAGCTATAGATTTTTg                                  >  2:1383105/1‑149 (MQ=255)

                                                                                                                    tttGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCGTCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTGACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTga                                 >  1:1625056/1‑149 (MQ=255)

                                                                                                                      tGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTgaaa                               <  2:272625/149‑1 (MQ=255)

                                                                                                                      tGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTgaaa                               <  1:300886/149‑1 (MQ=255)

                                                                                                                      tGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTGgaga                               <  2:1548789/149‑3 (MQ=255)

                                                                                                                       gTCCGCGATGCTTGCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTgaaag                              <  2:1504453/149‑1 (MQ=255)

                                                                                                                          cgcgATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGGGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTgagaggaa                           >  1:601991/1‑149 (MQ=255)

                                                                                                                            cgATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTgaaaggaaag                         <  1:1602478/149‑1 (MQ=255)

                                                                                                                            cgATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTgaaaggaaag                         >  1:1610737/1‑149 (MQ=255)

                                                                                                                            cgATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTgaaaggaaag                         <  1:591239/149‑1 (MQ=255)

                                                                                                                             gATGCTGTCCTCGATGAGTCAAAATGGCCCCAAATGTGTCATCTTGTGGGGGAAGACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAagc                        <  1:527651/149‑1 (MQ=255)

                                                                                                                              aTGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAagca                       <  1:1191116/149‑1 (MQ=255)

                                                                                                                                gCTTTCCTCTATGAGTCAAAATGGCCCCAACTGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAagcagc                     <  1:1393946/149‑1 (MQ=255)

                                                                                                                                      ctctATGGGTCAAAATGGCCCCAAATTTTTCATCTTATGGGGGAAAACGGTGCATTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTAACGAACGTCTGCCCATGTCGATTTAGAATTAGTTTTTTGAAAGTAAAGCAGCATGaaa               <  2:501145/149‑1 (MQ=255)

                                                                                                                                      ctctATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGaaa               >  2:764024/1‑149 (MQ=255)

                                                                                                                                         tATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAAtt            <  1:535752/149‑1 (MQ=255)

                                                                                                                                            ttgccAAAATCGCCCCAGATGTTTCATCTTTTGGGGGAAAACTGTTCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTTTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAATCAGCATGAAAATTaaa         <  2:180185/145‑1 (MQ=255)

                                                                                                                                            gAGTCAAAAGGGCCCCAAATGTTTCATCTTTTGGGGGAAAACGGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACGGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTaaa         <  2:322128/149‑1 (MQ=255)

                                                                                                                                               tCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAGAGAAAGCAGCATGAAAATTAAAAct      >  1:812841/1‑149 (MQ=255)

                                                                                                                                               tCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTCTTGAAAGGAAAGCAGCAGGAAAATTAAACct      >  1:813640/1‑149 (MQ=255)

                                                                                                                                                   aaTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAACTCTgg  <  2:1337516/149‑1 (MQ=255)

                                                                                                                                                   aaTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAACTCTgg  <  1:923539/149‑1 (MQ=255)

TCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACAT‑CTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAACTCTGG  >  NC_000913/4542840‑4543134

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.