New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3917666 =	108 (1.310)	3 (0.040)	3/270	NT	2.7%	coding (599/864 nt)	atpG	F1 sector of membrane‑bound ATP synthase, gamma subunit
	?	NC_000913	3917721 =	112 (1.390)					coding (544/864 nt)	atpG	F1 sector of membrane‑bound ATP synthase, gamma subunit
Rejected: Frequency below/above cutoff threshold.

ACATTGTCAGCAACAAATTTATTAACACCATGTCTCAGGTTCCGACCATCAGCCAGCTGCTGCCGTTACCGGCATCAGATGATGATGATCTGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3917759‑3917666 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaCCTGAGACATGGTGTTAATAAATTTGTTGCTGACAATGTAAAGCTTGTCCAGACGGCCTTCGTCGTAGGCCTGCAACATCACTTTTACCGGACCGATCA  >  NC_000913/3917721‑3917819                                                                                                                                                                                                   ACATTGTCAGCAACAAATTTATTAACACCATGTCTCAGGTTCCGACCATCAGCCAGCTGCTGCCGTTACCGGCATCAGATGATGATGATCTGAACCTGGGACATGGTGTTAATAAATTTGTTGCTGACAATGTAAAGCTTGTCCAGACG                                              >  1:380130/1‑149             ACAAATTTATTAACACCATGTCTCAGGTTCCGACCATCAGCCAGCTGCTGCCGTTACCGGCATCAGATGATGATGATCTGAACCTGGGACATGGTGTTAATAAATTTGTTGCTGACAATGTAAAGCTTGTCCAGACGGCCTTCGTCGTA                                  <  2:380130/149‑1                                             ACCATCAGCCAGCTGCTGCCGTTACCGGCATCAGATGATGATGGTCGGAACCTGAGACATGGTGTTAATAAATTTGTTGCTGACAATGTAAAGCTTGTCCAGACGGCCTTCGTCGTAGGCCTGCAACATCACTTTTGCCGGACCGATCA  >  2:823090/1‑149                                                                                                                                                                                                   ACATTGTCAGCAACAAATTTATTAACACCATGTCTCAGGTTCCGACCATCAGCCAGCTGCTGCCGTTACCGGCATCAGATGATGATGATCTGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3917759‑3917666 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaCCTGAGACATGGTGTTAATAAATTTGTTGCTGACAATGTAAAGCTTGTCCAGACGGCCTTCGTCGTAGGCCTGCAACATCACTTTTACCGGACCGATCA  >  NC_000913/3917721‑3917819

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.