New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1129605 =	58 (0.890)	3 (0.050)	3/244	NT	5.5%	coding (226/417 nt)	flgN	export chaperone for FlgK and FlgL
	?	NC_000913	1129627 =	49 (0.810)					coding (204/417 nt)	flgN	export chaperone for FlgK and FlgL

GTTCCTGATGCGGTTTCAACATTTCCAGCGCCTGTTGATTGCGCTCAATCTGTCCTTCCAGTAACCAGCCGTTATGTTGATTCATTTGGCGTAGTTGCTGCGTTTTCACAGTAATTTCCTGCCAGCGTTGACTAATA‑TCAACGCTATTTGCTGTATTGGGTTCTTTCCTGCGTAACTGTTCGAGGTAATCCAGCGTCGCCAGCAGTGAGCTTTTTTGTTCTGTAATCCATTGCAACTGGCTGCCGTTGATCTGCCCCATAGAGAGATGTTGCTGCTCTTGATCCA  >  NC_000913/1129482‑1129766                                                                                                                                                   |                                                                                                                                            gTTCCTGATGCGGTTTCAACATTTCCAGCGCCTGTTGATTGCGCTCAATCTGTCCTTCCAGTAACCAGCCGTTATGTTGATTCATTTGGCGTAGTTGCTGCGTTTTCACAGTAATTTCCTGCCAGCGTTGACTAATA‑TCAACGCTAttt                                                                                                                                          >  2:296445/1‑149 (MQ=255) gTTCCTGATGCGGTTTCAACATTTCCAGCGCCTGTTGATTGCGCTCAATCTGTCCTTCCAGTAACCAGCCGTTATGTTGATTCATTTGGCGTAGTTGCTGCGTTTTCACAGTAATTTCCTGCCAGCGTTGACTAATA‑TCAACGCTAttt                                                                                                                                          >  1:473528/1‑149 (MQ=255) gTTCCTGATGCGGTTTCAACATTTCCAGCGCCTGTTGATTGCGCTCAATCTGTCCTTCCAGTAACAAGCCGTTATGTTGATTCATTTGGCGTAGTTGCTGCGTTTTCACAGTAATTTCCTGCCAGCGTTGACTAATA‑TCAACGCTAttt                                                                                                                                          >  3:253547/1‑149 (MQ=255)         tGCGGTTTCAACATTTCCAGCGCCTGTTGATTGCGCTCAATCTGTCCTTCCAGTAACCAGCCGTTATGTTGATTCATTTGGCGTAGTTGCTGCGTTTTCACAGTAATTTCCTGCCAGCGTTGACTAATA‑TCAACGCTATTTGCTGTAtt                                                                                                                                  <  3:390888/149‑1 (MQ=255)           cGGTTTCAACATTTCCAGCGCCTGTTGATTGCGCTCAATCTGTCCTTCCAGTAAACAGCCGTTATGTTGATTCATTTGGCGTAGTTGCTGCGTTTTCACAGTAATTTCCTGCCAGCGTTGACTAATA‑TCAACGCTATTTGCTGTATTgg                                                                                                                                <  2:564366/149‑1 (MQ=255)            ggTTTCAACATTTCCAGCGCCTGTTGATTGCGCTCAATCTGTCCTTCCAGTAACCAGCCGTTATGTTGATTCATTTGGCGTAGTTGCTGCGTTTTCACAGTAATTTCCTGCCAGCGTTGACTAATA‑TCAACGCTATTTGCTGTATTggg                                                                                                                               >  1:552036/1‑149 (MQ=255)                  aaCATTTCCAGCGCCTGTTGATTGCGCTCAATCTGTCCTTCCAGTAACCAGCCGTTATGTTGATTCATTTGGCGTAGTTGCTGCGTTTTCACAGTAATTTCCTGCCAGCGTTGACTAATA‑TCAACGCTATTTGCTGTATTGGGTTCttt                                                                                                                         >  3:325910/1‑149 (MQ=255)                   aCATTTCCAGCGCCTGTTGATTGCGCTCAATCTGTCCTTCCAGTAACCAGCCGTTATGTTGATTCATTTGGCGTAGTTGCTGCGTTTTCACAGTAATTTCCTGCCAGCGTTGACTAATA‑TCAACGCTATTTGCTGTATTGGGTTCTTTc                                                                                                                        <  4:103100/149‑1 (MQ=255)                   aCATTTCCAGCGCCTGTTGATTGCGCTCAATCTGTCCTTCCAGTAACCAGCCGTTATGTTGATTCATTTGGCGTAGTTGCTGCGTTTTCACAGTAATTTCCTGCCAGCGTTGACTAATA‑TCAACGCTATTTGCTGTATTGGGTTCTTTc                                                                                                                        >  3:528666/1‑149 (MQ=255)                     tcaacggcagccagttgcaatggattacagaacaaaaaagctcactgctggcgacgctggattacctcgaacagttacgcaggaaagaacccaatacagcaaatagcgttgactaatatcaacgctATTTGCTGTATTgg                                                                                                                                >  3:36121‑M2/127‑140 (MQ=255)                     tcaacggcagccagttgcaatggattacagaacaaaaaagctcactgctggcgacgctggattacctcgaacagttacgcaggaaagaacccaatacagcaaatagcgttgactaatatcaacgctATTTGCTGTATTgg                                                                                                                                <  4:36121‑M2/14‑1 (MQ=255)                       ttCCAGCGCCTGTTGATTGCGCTCAATCTGTCCTTCCAGTAACCAGCCGTTATGTTGATTCATTTGGCGTAGTTGCTGCGTTTTCACAGTAATTTCCTGCCAGCGTTGACTAATA‑TCAACGCTATTTGCTGTATTGGGTTCTTTCCTGc                                                                                                                    <  1:334250/149‑1 (MQ=255)                           aGCGCCTGTTGATTGCGCTCAATCTGTCCTTCCAGTAACCAGCCGTTATGTTGATTCATTTGGCGTAGTTGCTGCGTTTTCACAGTAATTTCCTGCCAGCGTTGACTAATA‑TCAACGCTATTTGCTGTATTGGGTTCTTTCCTGCGTaa                                                                                                                <  2:450425/149‑1 (MQ=255)                               ccTGTTGATTGCGCTCAATCTGTCCTTCCAGTAACCAGCTGTTATGTTGATTCATTTGGCGTAGTTGCTGCGTTTTCACAGTAATTTCATGCCAGCGTTGACTAATA‑TCAACGATATTTGCTGTATTGGGTTCTTTACTGCGTAACTGt                                                                                                            >  2:55784/1‑149 (MQ=255)                                  gTTGATTGCGCTCAATCTGTCCTTCCAGTAACCAGCCGTTATGTTGATTCATTTGGCGTAGTTGCTGCGTTTTCACAGTAATTTCCTGCCAGCGTTGACTAATA‑TCAACGCTATTTGCTGTAt                                                                                                                                   >  1:418598/1‑123 (MQ=255)                                  gTTGATTGCGCTCAATCTGTCCTTCCAGTAACCAGCCGTTATGTTGATTCATTTGGCGTAGTTGCTGCGTTTTCACAGTAATTTCCTGCCAGCGTTGACTAATA‑TCAACGCTATTTGCTGTAt                                                                                                                                   <  2:418598/123‑1 (MQ=255)                                  gTTGATTGCGCTCAATCTGTCCTTCCAGTAACCAGCCGTTATGTTGATTCATTTGGCGTAGTTGCTGCGTTTTCACAGTAATTTCCTGCCAGCGTTGACTAATA‑TCAACGCTATTTGCTGTATTGGGTTCTTTCCTGCGTAACTGTTCg                                                                                                         >  2:204741/1‑149 (MQ=255)                                  gTTGATTGCGCTCAATCTGTCCTTCCAGTAACCAGCCGTTATGTTGATTCATTTGGCGTAGTTGCTGCGTTTTCACAGTAATTTCCTGCCAGCGTTGACTAATA‑TCAACGCTATTTGCTGTATTGGGTTCTTTCCTGCGTAACTGTTCg                                                                                                         >  2:327854/1‑149 (MQ=255)                                    tGATTGCGCTCAATCTGTCCTTCCAGTAACCAGCCGTTATGTTGATTCATTTGGCGTAGTTGCTGCGTTTTCACAGTAATTTCCTGCCAGCGTTGACTAATA‑TCAACGCTATTTGCTGTATTGGGTTCTTTCCTGCGTAACTGTTCGAg                                                                                                       <  4:550062/149‑1 (MQ=255)                                     gATTGCGCTCAATCTGTCCTTCCAGTAACCAGCCGTTATGTTGATTCATTTGGCGTAGTTGCTGCGTTTTCACAGTAATTTCCTGCCAGCGTTGACTAATA‑TCAACGCTATTTGCTGTATTGGGTTCTTTCCTGCGTAACTGTTCGAgg                                                                                                      >  4:509823/1‑149 (MQ=255)                                          cgcTCAATCTGTCCTTCCAGTAACCAGCCGTTATGTTGATTCATTTGGCGTAGTTGCTGCGTTTTCACAGTAATTTCCTGCCAGCGTTGACTAATA‑TCAACGCTATTTGCTGTATTGGGTTCTTTCCTGCGTAACTGTTCGAGGTAATc                                                                                                 <  4:528666/149‑1 (MQ=255)                                           gcTCAATCTGTCCTTCCAGTAACCAGCCGTTATGTTGATTCATTTGGCGTAGTTGCTGCGTTTTCACAGTAATTTCCTGCCAGCGTTGACTAATA‑TCAACGCTATTTGCTGTATTGGGTTCTTTCCTGCGTAACTGTTCGAGGTAATcc                                                                                                >  3:420863/1‑149 (MQ=255)                                            cTCAATCTGTCCTTCCAGTAACCAGCCGTTATGTTGATTCATTTGGCGTAGTTGCTGCGTTTTCACAGTAATTTCCTCCCAGCGTTGACTAATA‑TCAACGCTATTTGCTGTATTGGGTTCTTTCCTGCGTAACTGTTCGAGGTAATCCa                                                                                               >  2:425659/1‑149 (MQ=255)                                                 tCTGTCCTTCCAGTAACCAGCCGTTATGTTGATTCATTTGGCGTAGTTGCTGCGTTTTCACAGTAATTTCCTGCCAGCGTTGACTAATA‑TCAACGCTATTTGCTGTATTGGGTTc                                                                                                                            >  1:290089/1‑115 (MQ=255)                                                 tCTGTCCTTCCAGTAACCAGCCGTTATGTTGATTCATTTGGCGTAGTTGCTGCGTTTTCACAGTAATTTCCTGCCAGCGTTGACTAATA‑TCAACGCTATTTGCTGTATTGGGTTc                                                                                                                            <  2:290089/115‑1 (MQ=255)                                                        ttCCAGTAACCAGCCGTTATGTTGATTCATTTGGCGTAGTTGCTGCGTTTTCACAGTAATTTCCTGCCAGCGTTGACTAATA‑TCAACGCTATTTGCTGTATTGGGTTCTTTCCTGCGTAACTGTTCGAGGTAATCCAGCGTCGCcagca                                                                                   >  1:517328/1‑149 (MQ=255)                                                                   aGCCGTTATGTTGATTCATTTGGCGTAGTTGCTGCGTTTTCACAGTAATTTCCTGCCAGCGTTGACTAATA‑TCAACGCTATTTGCTGTATTGGGTTCTTTCCTGCGTAACTGTTCGAGGTAATCCAGCGTCGCCAGCAGTGAGCttttt                                                                        >  1:425704/1‑149 (MQ=255)                                                                    gCCGTTATGTTGATTCATTTGGCGTAGTTGCTGCGTTTTCACAGTAATTTCCTGCCAGCGTTGACTAATA‑TCAACGCTATTTGCTGTATTGGGTTCTTTCCTGCGTAACTGTTCGAGGTAATCCAGCGTCGCCAGCAGTGAGCtttttt                                                                       <  4:420863/149‑1 (MQ=255)                                                                    gCCGTTATGTTGATTCATTTGGCGTAGTTGCTGCGTTTTCACAGTAATTTCCTGCCAGCGTTGACTAATA‑TCAACGCTATTTGCTGTATTGGGTTCTTTCCTGCGTAACTGTTCGAGGTAATCCAGCGTCGCCAGCAGTGAGCtttttt                                                                       >  1:559937/1‑149 (MQ=255)                                                                     ccGTTATGTTGATTCATTTGGCGTAGTTGCTGCGTTTTCACAGTAATTTCCTGCCAGCGTTGACTAATA‑TCAACGCTATTTGCTGTATTGGGTTCTTTCCTGCGTAACTGTTCGAGGTAATCCAGCGTCGCCAGCAGTGAGCTTTTTTg                                                                      <  2:425704/149‑1 (MQ=255)                                                                       gTTATGTTGATTCATTTGGCGTAGTTGCTGCGTTTTCACAGTAATTTCCTGCCAGCGTTGACTAATA‑TCAACGCTATTTGCTGTATTGGGTTCTTTCCTGCGTAACTGTTCGAGGTAATCCAGCGTCGCCAGCAGTGAGCTTTTTTGtt                                                                    <  2:338016/149‑1 (MQ=255)                                                                       gTTATGTTGATTCATTTGGCGTAGTTGCTGCGTTTTCACAGTAATTTCCTGCCAGCGTTGACTAATA‑TCAACGCTATTTGCTGTATTGGGTTCTTTCCTGCGTAACTGTTCGAGGTAATCCAGCGTCGCCAGCAGTGAGCTTTTTTGtt                                                                    <  2:473528/149‑1 (MQ=255)                                                                        ttATGTTGATTCATTTGGCGTAGTTGCTGCGTTTTCACAGTAATTTCCTGCCAGCGTTGACTAATA‑TCAACGCTATTTGCTGTATTGGGTTCTTTCCTGCGTAACTGTTCGAGGTAATCCAGCGTCGCCAGCAGTGAGCTTTTTTGTTc                                                                   >  4:467290/1‑149 (MQ=255)                                                                        ttATGTTGATTCATTTGGCGTAGTTGCTGCGTTTTCACAGTAATTTCCTGCCAGCGTTGACTAATA‑TCAACGCTATTTGCTGTATTGGGTTCTTTCCTGCGTAACTGTTCGAGGTAATCCAGCGTCGCCAGCAGTGAGCTTTTTTGTTc                                                                   <  4:325910/149‑1 (MQ=255)                                                                                aTTCATTTGGCGTAGTTGCTGCGTTTTCACAGTAATTTCCTGCCAGCGTTGACTAATA‑TCAACGCTATTTGCTGTATTGGGTTCTTTCCTGCGTAACTGTTCGAGGTAATCCAGCGTCGCCAGCAGTGAGCTTTTTTGTTCTGTAATcc                                                           >  3:427135/1‑149 (MQ=255)                                                                                 ttCATTTGGCGTAGTTGCTGCGTTTTCACAGTAATTTCCTGCCAGCGTTGACTAATA‑TCAACGCTATTTGCTGTATTGGGTTCTTTCCTGCGTAACTGTTCGAGGTAATCCAGCGTCGCCAGCAGTGAGCTTTTTTGtt                                                                    <  1:132502/139‑1 (MQ=255)                                                                                 ttCATTTGGCGTAGTTGCTGCGTTTTCACAGTAATTTCCTGCCAGCGTTGACTAATA‑TCAACGCTATTTGCTGTATTGGGTTCTTTCCTGCGTAACTGTTCGAGGTAATCCAGCGTCGCCAGCAGTGAGCTTTTTTGtt                                                                    >  2:132502/1‑139 (MQ=255)                                                                                   cATTTGGCGTAGTTGCTGCGTTTTCACAGTAATTTCCTGCCAGCGTTGACTAATA‑TCAACGCTATTTGCTGTATTGGGTTCTTTCCTGCGTAACTGTTCGAGGTAATCCAGCGTCGCCAGCAGTGAGCTTTTTTGTTCTGTAATCCAtt                                                        <  1:425659/149‑1 (MQ=255)                                                                                    aTTTGGCGTAGTTGCTGCGTTTTCACAGTAATTTCCTGCCAGCGTTGACTAATA‑TCAACGCTATTTGCTGTATTgg                                                                                                                                >  3:125070/1‑76 (MQ=255)                                                                                    aTTTGGCGTAGTTGCTGCGTTTTCACAGTAATTTCCTGCCAGCGTTGACTAATA‑TCAACGCTATTTGCTGTATTgg                                                                                                                                <  4:125070/76‑1 (MQ=255)                                                                                     tttGGCGTAGTTGCTGCGTTTTCACAGTAATTTCCTGCCAGCGTTGACTAATA‑TCAACGCTATTTGCTGTATTGGGTTCTTTCCTGCGTAACTGTTCGAGGTaa                                                                                                   <  1:475309/104‑1 (MQ=255)                                                                                     tttGGCGTAGTTGCTGCGTTTTCACAGTAATTTCCTGCCAGCGTTGACTAATA‑TCAACGCTATTTGCTGTATTGGGTTCTTTCCTGCGTAACTGTTCGAGGTaa                                                                                                   >  2:475309/1‑104 (MQ=255)                                                                                     tttGGCGTAGTTGCTGCGTTTTCACAGTAATTTCCTGCCAGCGTTGACTAATA‑TCAACGCTATTTGCTGTATTGGGTTCTTTCCTGCGTAACTGTTCGAGGTAATCCAGCGTCGCCAGCAGTGAGCtttttt                                                                       >  1:473926/1‑132 (MQ=255)                                                                                     tttGGCGTAGTTGCTGCGTTTTCACAGTAATTTCCTGCCAGCGTTGACTAATA‑TCAACGCTATTTGCTGTATTGGGTTCTTTCCTGCGTAACTGTTCGAGGTAATCCAGCGTCGCCAGCAGTGAGCtttttt                                                                       <  2:473926/132‑1 (MQ=255)                                                                                     tttGGCGTAGTTGCTGCGTTTTCACAGTAATTTCCTGCCAGCGTTGACTAATA‑TCAACGCTATTTGCTGTATTGGGTTCTTTCCTGCGTAACTGTTCGAGGTAATCCAGCGTCGCCAGCAGTGAGCTTTTTTGTTCTGTAATCCATTGc                                                      >  2:435016/1‑149 (MQ=255)                                                                                         gCGTAGTTGCTGCGTTTTCACAGTAATTTCCTGCCAGCGTTGACTAATA‑TCAACGCTATTTGCTGTATTGGGTTCTTTCCTGCGTAACTGTTCGAGGTAATCCAGCGTCGCCAGCAGTGAGCTTTTTTGTTCTGTAATCCATTGCAACt                                                  <  3:509823/149‑1 (MQ=255)                                                                                                            acaGTAATTTCGTGCCAGCGTTGACTAATA‑TCAACGCTATTTGCTGTATTGGGTTCTTTCCTGCGTAACTGTTCGAGGTAATCCAGCGTCGCCAGCAGTGAGCTTTTTTGTTCTGTAATCCATTGCGACTGGCTGCCGTTGATCTGccc                               >  3:332749/1‑149 (MQ=255)                                                                                                              ccaatacagcaaatAGCGTTGA‑TATTAGTCAACGCTATTTGCTGTATTGGGTTCTTTCCTGCGTAACTGTTCGAGGTAATCCAGCGTCGCCAGCAGTGAGCTTTTTTGTTCTGTAATCCATTGCAACTGGCTGCCGTTGa                                      >  3:36121‑M1/15‑140 (MQ=255)                                                                                                              ccaatacagcaaatAGCGTTGA‑TATTAGTCAACGCTATTTGCTGTATTGGGTTCTTTCCTGCGTAACTGTTCGAGGTAATCCAGCGTCGCCAGCAGTGAGCTTTTTTGTTCTGTAATCCATTGCAACTGGCTGCCGTTGa                                      <  4:36121‑M1/126‑1 (MQ=255)                                                                                                              aGTAATTTCCTGCCAGCGTTGACTAATA‑TCAACGCTATTTGCTGTATTGGGTTCTTTCCTGCGTAACTGTTCGAGGTAATCCAGCGTCGCCAGCAGTGAGCTTTTTTGTTCTGTAATCCATTGCAACTGGCTGCCGTTGATCTGCCCCa                             >  3:184993/1‑149 (MQ=255)                                                                                                              aGTAATTTCCTGCCAGCGTTGACTAATA‑TCAACGCTATTTGCTGTATTGGGTTCTTTCCTGCGTAACTGTTCGAGGTAATCCAGCGTCGCCAGCAGTGAGCTTTTTTGTTCTGTAATCCATTGCAACTGGCTGCCGTTGATCTGCCCCa                             <  4:184993/149‑1 (MQ=255)                                                                                                                  aTTTCCTGCCAGCGTTGACTAATA‑TCAACGCTATTTGCTGTATTGGGTTCTTTCCTGCGTAACTGTTCGAGGTAATCCAGCGTCGCCAGCAGTGAGCTTTTTTGTTCTGTAATCCATTGCAACTGGCTGCCGTTGATCTGCCCCATaga                         <  2:259758/149‑1 (MQ=255)                                                                                                                    ttCCTGCCAGCGTTGACTAATA‑TCAACGCTATTTGCTGTATTGGGTTCTTTCCTGCGTAACTGTTCGAGGTAATCCAGCGTCGCCAGCAGTGAGCTTTTTTGTTCTGTAATCCATTGCAACTGGCTGCCGTTGATCTGCCCCATagaga                       >  1:391345/1‑149 (MQ=255)                                                                                                                     tCCTGCCAGCGTTGACTAATA‑TCAACGCTATTTGCTGTATTGGGTTCTTTCCTGCGTAACTGTTCGAGGTAATCCAGCGTCGCCAGCAGTGAGCTTTTTTGTTCTGTAATCCATTGCAACTGGCTGCCGTTGATCTGCCCCATagagag                      >  1:470674/1‑149 (MQ=255)                                                                                                                      ccTGCCAGCGTTGACTAATA‑TCAACGCTATTTGCTGTATTGGGTTCTTTCCTGCGTAACTGTTCGAGGTAATCCAGCGTCGCCAGCAGTGAGCTTTTTTGTTCTGTAATCCATTGCAACTGGCTGCCGTTGATCTGCCCCGTAgagaga                     <  3:539949/149‑1 (MQ=255)                                                                                                                           cAGCGTTGACTAATA‑TCAACGCTATTTGCTGTATTGGGTTCTTTCCTGCGTAACTGTTCGAGGTAATCCAGCGTCGCCAGCAGTGAGCTTTTTTGTTCTGTAATCCATTGCAACTGGCTGCCGTTGATCTGCCCCATAGAGAGATGTtg                >  1:81521/1‑149 (MQ=255)                                                                                                                               GTTGACTAATA‑TCAACGCTATTTGCTGTATTGGGTTCTTTCCTGCGTAACTGTTCGAGGTAATCCAGCGTCGCCAGCAGTGAGCTTTTTTGTTCTGTAATCCATTGCAACTGGCTGCCGTTGATCTGCCCCATAGAGAGATGTtgctgc            <  1:340850‑M1/149‑1 (MQ=255)                                                                                                                                gttgatattagtcaacgctATTTGCTGTATTGGGTTCTTTCCTGCGTAACTGTTCGAGGTAATCCAGCGTCGCCAGCAGTGAGCTTTTTTGTTCTGTAATCCATTGCAACTGGCTGCCGTTGATCTGCCCCATAGAGAGATGTtgctgc            >  1:345103‑M2/20‑149 (MQ=255)                                                                                                                                 TGACTAATA‑TCAACGCTATTTGCTGTATTGGGTTCTTTCCTGCGTAACTGTTCGAGGTAATCCAGCGTCGCCAGCAGTGAGCTTTTTTGTTCTGTAATCCATTGCAACTGGCTGCCGTTGATCTGCCCCATAGAGAGATGTTGCTGctc          >  1:585277‑M1/1‑149 (MQ=255)                                                                                                                                   ACTAATA‑TCAACGCTATTTGCTGTATTGGGTTCTTTCCTGCGTAACTGTTCGAGGTAATCCAGCGTCGCCAGCAGTGAGCTTTTTTGTTCTGTAATCCATTGCAACTGGCTGCCGTTGATCTGCCCCATAGAGAGATGTTGCTGCTCtt        >  4:336517‑M1/1‑149 (MQ=255)                                                                                                                                     tAATA‑TCAACGCTATTTGCTGTATTGGGTTCTTTCCTGCGTAACTGTTCGAGGTAATCCAGCGTCGCCAGCAGTGAGCTTTTTTGTTCTGTAATCCATTGCAACTGGCTGCCGTTGATCTGACCCATAGAGAGATGTTGCTGCGCATGa      >  4:377998/1‑149 (MQ=255)                                                                                                                                     tAATA‑TCAACGCTATTTGCTGTATTGGGTTCTTTCCTGAGTAACTGTTCGAGGTAATCCAGCGTCGCCAGCAGTGAGCTTTTTTGTTCTGTAATCCATTGCAACTGGCTGCCGTTGATCTGCCCCATAGAGAGATGTTGCTGCTCTTGa      <  1:296445/149‑1 (MQ=255)                                                                                                                                       ata‑tCAACGCTATTTGCTGTATTGGGTTCTTTCCTGCGTAACTGTTCGAGGTAATCCAGCGTCGCCAGCAGTGAGCTTTTTTGTTCTGTAATCCATTGCAACTGGCTGCCGTTGATCTGCCCCATAGAGAGATGTTGCTGCTCTTGATc    <  3:377998/149‑1 (MQ=255)                                                                                                                                        ta‑tCAACGCTATTTGCTGTATTGGGTTCTTTCCTGCGTAACTGTTCGAGGTAATCCAGCGTCGCCAGCAGTGAGCTTTTTTGTTCTGTAATCCATTGCAACTGGCTGCCGTTGATCTGCCCCATAGAGAGATGTTGCTGCTCTTGATcc   >  4:478735/1‑149 (MQ=255)                                                                                                                                         a‑tCAACGCTATTTGCTGTATTGGGTTCTTTCCTGCGTAACTGTTCGAGGTAATCCAGCGTCGCCAGCAGTGAGCTTTTTTGTTCTGTAATCCATTGCAACTGGCTGCCGTTGATCTGCCCCATAGAGAGATGTTGCTGCTCTTGATCCa  >  3:460234/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                            GTTCCTGATGCGGTTTCAACATTTCCAGCGCCTGTTGATTGCGCTCAATCTGTCCTTCCAGTAACCAGCCGTTATGTTGATTCATTTGGCGTAGTTGCTGCGTTTTCACAGTAATTTCCTGCCAGCGTTGACTAATA‑TCAACGCTATTTGCTGTATTGGGTTCTTTCCTGCGTAACTGTTCGAGGTAATCCAGCGTCGCCAGCAGTGAGCTTTTTTGTTCTGTAATCCATTGCAACTGGCTGCCGTTGATCTGCCCCATAGAGAGATGTTGCTGCTCTTGATCCA  >  NC_000913/1129482‑1129766

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.