BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4148370 =	97 (0.830)	3 (0.030)	3/248	NT	3.2%	intergenic (‑53/+162)	yijO/eptC	AraC family putative transcriptional activator/LPS heptose I phosphoethanolamine transferase
*	?	NC_000913	4148393 =	NA (NA)	3 (0.030)	3/248	NT	3.2%	intergenic (‑76/+139)	yijO/eptC	AraC family putative transcriptional activator/LPS heptose I phosphoethanolamine transferase
Rejected: Frequency below/above cutoff threshold.

Only 100 of 116 total aligned reads displayed.

GGGCACCGGGCCGTTACTGCTGGCAAAGTAAATCTGGCGCAGGGACAGCGGGCCGTTGATCAGGCGGGAGAGCAGATAGCTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAA  >  NC_000913/4148222‑4148514

gggCACCGGGCCGTTACTGCTGGCAAAGTAAATCTGGCGCAGGGACAGCGGGCCGTTGATCAGGCGGGAGAGCAGATAGCTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTaaaaaa                                                                                                                                                   <  4:193535/149‑1 (MQ=255)

gggCACCGGGCCGTTACTGCTGGCAAAGTAAATCTGGCGCAGGGACAGCGGGCCGTTGATCAGGCGGGAGAGCAGATAGCTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTaaaaaa                                                                                                                                                   <  3:411509/149‑1 (MQ=255)

gggCACCGGGCCGTTACTGCTGGCAAAGTAAATCTGGCGCAGGGACAGCGGGCCGTTGATCAGGCGGGAGAGCAGATAGCTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTaaaaaa                                                                                                                                                   <  3:163062/149‑1 (MQ=255)

gggCACCGGGCCGTTACTGCTGGCAAAGTAAATCTGGCGCAGGGACAGCGGGCCGTTGATCAGGCGGGAGAGCAGATAGCTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTaaaaaa                                                                                                                                                   >  2:567615/1‑149 (MQ=255)

 ggCACCGGGCCGTTACTGCTGGCAAAGTAAATCTGGCGCAGGGACAGCGGGCCGTTGATCAGGCGGGAGAGCAGATAGCTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAg                                                                                                                                                  <  3:272892/149‑1 (MQ=255)

 atcagtaattatcagccaggcgctatttgccggatgcgacgcttgacgcgtcttatccggcctacagatcgcggcggtaggctggataaggcgtttacgccacatccggcaatacaactgccgcaatgtttacatcgaactcccctcAg                                                                                                                                                  >  4:618371‑M1/148‑149 (MQ=255)

  tcagtaattatcagccaggcgctatttgccggatgcgacgcttgacgcgtcttatccggcctacagatcgcggcggtaggctggataaggcgtttacgccacatccggcaatacaactgccgcaatgtttacatcgaactcccctcAgg                                                                                                                                                 <  4:334245‑M1/3‑1 (MQ=255)

  tcagtaattatcagccaggcgctatttgccggatgcgacgcttgacgcgtcttatccggcctacagatcgcggcggtaggctggataaggcgtttacgccacatccggcaatacaactgccgcaatgtttacatcgaactcccctcAgg                                                                                                                                                 <  1:526244‑M1/3‑1 (MQ=255)

  gCACCGGGCCGTTACTGCTGGCAAAGTAAATCTGGCGCAGGGACAGCGGGCCGTTGATCAGGCGGGAGAGCAGATAGCTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAgg                                                                                                                                                 <  2:220610/149‑1 (MQ=255)

   cagtaattatcagccaggcgctatttgccggatgcgacgcttgacgcgtcttatccggcctacagatcgcggcggtaggctggataaggcgtttacgccacatccggcaatacaactgccgcaatgtttacatcgaactcccctcAGGc                                                                                                                                                >  3:111104‑M1/146‑149 (MQ=255)

   cagtaattatcagccaggcgctatttgccggatgcgacgcttgacgcgtcttatccggcctacagatcgcggcggtaggctggataaggcgtttacgccacatccggcaatacaactgccgcaatgtttacatcgaactcccctcAGGc                                                                                                                                                <  1:567615‑M1/4‑1 (MQ=255)

    aCCGGGCCGTTACTGCTGGCAAAGTAAATCTGGCGCAGGGACAGCGGGCCGTTGATCAGGCGGGAGAGCAGATAGCTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGcc                                                                                                                                               >  2:975096/1‑149 (MQ=255)

      cGGGCCGTTACTGCTGGCAAAGTAAATCTGGCGCAGGGACAGCTGGCAGTTGATCAGGCGGGAGAGCAGATAGCTGACGTCGTGATACATGTTCTTCGCTTAGGTATGTAGACGGGAAAACAGTAATTGGCATTATTAAAAAAGGCAAc                                                                                                                                             <  4:881060/149‑1 (MQ=255)

             ttACTGCTGGCAAAGTAAATCTGGCGCAGGGACAGCGGGCCGTTGATCAGGCGGGAGAGCAGATAGCTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGaaaa                                                                                                                                     >  4:744991/1‑149 (MQ=255)

                 tgctgGCAAAGTAAATCGGGCGCAGGGACAGCGGGCCGTTGATCAGGCGGGAGAGCAGATAGCTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAgtgt                                                                                                                                 <  4:658620/149‑1 (MQ=255)

                  gctgGCAAAGTAAATCTGGCGCAGGGACAGCGGGCCGTTGATCAGGCGGGAGAGCAGATAGCTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGtgtg                                                                                                                                <  2:693490/149‑1 (MQ=255)

                      gCAAAGTAAATCTGGCGCAGGGACAGCGGGCCGTTGATCAGGCGGGAGAGCAGATAGCTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCt                                                                                                                            >  2:1054491/1‑149 (MQ=255)

                      gCAAAGTAAATCTGGCGCAGGGACAGCGGGCCCTTGATCAGGCCGGAGAGCAGATAGCTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑GTGAAAAGTGTGGCCt                                                                                                                            >  2:115179/1‑149 (MQ=255)

                         aaGTAAATCTGGCGCAGGGACAGCGGGCCGTTGATCAGGCGGGAGAGCAGATAGCTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAGAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAg                                                                                                                         <  4:517946/149‑1 (MQ=255)

                          aGTAAATCTGGCGCAGGGACAGCGGGCCGTTGATCAGGCGGGAGAGCAGATAGCTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAgg                                                                                                                        <  1:492295/149‑1 (MQ=255)

                          aGTAAATCTGGCGCAGGGACAGCGGGCCGTTGATCAGGCGGGAGAGCAGATAGCTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAgg                                                                                                                        <  4:482026/149‑1 (MQ=255)

                             aaaTCTGGCGCAGGGACAGCGGGCCGTTGATCAGGCGGGAGAGCAGATAGCTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGa                                                                                                                     <  2:11510/149‑1 (MQ=255)

                             aaaTCTGGCGCAGGGACAGCGGGCCGTTGATCAGGCGGGAGAGCAGATAGCTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGa                                                                                                                     >  3:135027/1‑149 (MQ=255)

                             aaaTCTGGCGCAGGGACAGCGGGCCGTTGATCAGGCGGGAGAGCAGATAGCTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGa                                                                                                                     <  2:943665/149‑1 (MQ=255)

                              aaTCTGGCGCAGGGACAGCGGGCCGTTGATCAGGCGGGAGAGCAGATAGCTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAg                                                                                                                    <  4:776364/149‑1 (MQ=255)

                                tCTGGCGCAGGGACAGCGGGCCGTTGATCAGGCGGGAGAGCAGATAGCTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAggg                                                                                                                       >  2:270469/1‑144 (MQ=255)

                                tCTGGCGCAGGGACAGCGGGCCGTTGATCAGGCGGGAGAGCAGATAGCTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAggg                                                                                                                       <  1:270469/144‑1 (MQ=255)

                                tCTGGCGCAGGGACAGCGGGCCGTTGATCAGGCGGGAGAGCAGATAGCTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGtt                                                                                                                  <  3:308217/149‑1 (MQ=255)

                                 cTGGCGCAGGGACAGCGGGCCGTTGATCAGGCGGGAGAGCAGATAGCTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTc                                                                                                                 >  2:1022546/1‑149 (MQ=255)

                                   ggggcAGGGACAGCGGGCCGTTGATCAGGCGGGAGAGCAGATAGCTGACGTCGTGATACCTGTTATTCCCTTAGGTATGTAAACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGa                                                                                                               <  4:872176/146‑1 (MQ=255)

                                   ggCGCAGGGACAGCGGGCCGTTGATCAGGCGGGAGAGCAGATAGCTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGa                                                                                                               <  2:934235/149‑1 (MQ=255)

                                   ggCGCAGGGACAGCGGGCCGTTGATCAGGCGGGAGAGCAGATAGCTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGa                                                                                                               <  1:1022546/149‑1 (MQ=255)

                                    gcgcAGGGACAGCGGGCCGTTGATCAGGCGGGAGAGCAGATAGCTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGAt                                                                                                              <  3:731638/149‑1 (MQ=255)

                                    gcgcAGGGACAGCGGGCCGTTGATCAGGCGGGAGAGCAGATAGCTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGAt                                                                                                              <  1:490629/149‑1 (MQ=255)

                                           gACAGCGGGCCGTTGATCAGGCGGGAGAGCAGATAACTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCa                                                                                                                                              <  2:515765/111‑1 (MQ=255)

                                              aGCGGGCCGTTGATCAGGCGGGAGAGCAGATAGCTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTg                                                                                                    >  2:514320/1‑149 (MQ=255)

                                               gCGGGCCGTTGATCAGGCGGGAGAGCAGATAGCTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGc                                                                                                   <  2:335188/149‑1 (MQ=255)

                                                  ggCCGTTGATCAGGCGGGAGAGCAGATAGCTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGc                                                                                                >  1:141302/1‑149 (MQ=255)

                                                      gTTGATCAGGCGGGAGAGCAGATAGCTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGtt                                                                                            <  1:1054491/149‑1 (MQ=255)

                                                      gTTGATCAGGCGGGAGAGCAGATAGCTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGtt                                                                                            >  2:1036540/1‑149 (MQ=255)

                                                      gTTGATCAGGCGGGAGAGCAGATAGCTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGtt                                                                                            >  2:86062/1‑149 (MQ=255)

                                                       ttGATCAGGCGGGAGAGCAGATAGCTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTg                                                                                           >  1:708079/1‑149 (MQ=255)

                                                              ggCGGGAGAGCAGATAGCTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGcc                                                                                    <  2:141302/149‑1 (MQ=255)

                                                              ggCGGGAGAGCAGATAGCTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGcc                                                                                    <  1:486004/149‑1 (MQ=255)

                                                                   gagaGCAGATAGCTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAg                                                                                                                         <  3:636950/107‑1 (MQ=255)

                                                                   gagaGCAGATAGCTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAg                                                                                                                         >  4:636950/1‑107 (MQ=255)

                                                                    agagCAGATAGCTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGAtgt                                                                              >  2:740514/1‑149 (MQ=255)

                                                                      agCAGATAGCTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGtgtg                                                                                                                                <  3:477349/97‑1 (MQ=255)

                                                                      agCAGATAGCTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGtgtg                                                                                                                                >  4:477349/1‑97 (MQ=255)

                                                                      agCAGATAGCTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTgg                                                                            <  4:583902/149‑1 (MQ=255)

                                                                      agCAGATAGCTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTgg                                                                            >  3:867221/1‑149 (MQ=255)

                                                                         aGATAGCTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGt                                                                         >  1:472156/1‑149 (MQ=255)

                                                                             aGCTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAAc                                                                     <  3:998850/149‑1 (MQ=255)

                                                                                tGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGcc                                                                  >  3:362213/1‑149 (MQ=255)

                                                                                       taaggcgtttacgccacatccggcaatacaactgccgcaatgtttacatcgaactcccctcAGGCCAC‑CTGAAAAGTGTGGCCTGAgg                                                                                                                        >  1:64745‑M1/62‑88 (MQ=255)

                                                                                       taaggcgtttacgccacatccggcaatacaactgccgcaatgtttacatcgaactcccctcAGGCCAC‑CTGAAAAGTGTGGCCTGAgg                                                                                                                        <  2:64745‑M1/27‑1 (MQ=255)

                                                                                         gATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGc                                                         <  2:708079/149‑1 (MQ=255)

                                                                                              aTGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTAcc                                                    >  3:233670/1‑149 (MQ=255)

                                                                                                gTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCt                                                                 <  3:611926/134‑1 (MQ=255)

                                                                                                gTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCt                                                                 >  4:611926/1‑134 (MQ=255)

                                                                                                gTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTAccgc                                                  <  4:297470/149‑1 (MQ=255)

                                                                                                   aTTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACcgccgc                                               <  4:482231/149‑1 (MQ=255)

                                                                                                       ccTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAg                                                                                                                                                  >  3:774942/1‑47 (MQ=255)

                                                                                                       ccTTAGGTATGTAGACGGGAAAACAGTAACTCGCATTATTAAAAAAg                                                                                                                                                  <  4:774942/47‑1 (MQ=255)

                                                                                                         ttAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTg                                         >  1:1032193/1‑149 (MQ=255)

                                                                                                         ttAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTg                                         >  4:63295/1‑149 (MQ=255)

                                                                                                          tAGGTATGTAGACGGGAAAACAGTAACTGGTATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGt                                        <  4:281678/149‑1 (MQ=255)

                                                                                                           aGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTa                                       <  4:105896/149‑1 (MQ=255)

                                                                                                                tGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCg                                  <  1:749234/149‑1 (MQ=255)

                                                                                                                tGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCg                                  >  4:330679/1‑149 (MQ=255)

                                                                                                                   aGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGAt                               <  2:1032193/149‑1 (MQ=255)

                                                                                                                   aGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGAt                               >  2:126954/1‑149 (MQ=255)

                                                                                                                     aCGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAACCGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATaa                             >  4:435914/1‑149 (MQ=255)

                                                                                                                     aCGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTAGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATaa                             <  4:812281/149‑1 (MQ=255)

                                                                                                                       gggAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGa                           >  2:335815/1‑149 (MQ=255)

                                                                                                                        ggAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGAc                          >  2:1050394/1‑149 (MQ=255)

                                                                                                                        ggAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGAc                          >  1:977176/1‑149 (MQ=255)

                                                                                                                         gAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGAcg                         >  4:167247/1‑149 (MQ=255)

                                                                                                                           aaaCAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGAcgcg                       >  4:183831/1‑149 (MQ=255)

                                                                                                                            aaCAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGt                      >  4:250985/1‑149 (MQ=255)

                                                                                                                              cAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAg                                      <  3:818863/131‑1 (MQ=255)

                                                                                                                              cAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAg                                      >  4:818863/1‑131 (MQ=255)

                                                                                                                               aGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCaa                   >  1:88092/1‑149 (MQ=255)

                                                                                                                                gTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAg                  >  4:284525/1‑149 (MQ=255)

                                                                                                                                gTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAg                  >  2:600564/1‑149 (MQ=255)

                                                                                                                                 tttacatcgaactcccctcAGGCCACACTTTTCAG‑GTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGc                 <  3:412059‑M1/130‑1 (MQ=255)

                                                                                                                                 aaaCTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGc                 >  1:693103/2‑149 (MQ=255)

                                                                                                                                  aaCTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTAc                                                     <  4:53231/112‑1 (MQ=255)

                                                                                                                                  aaCTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTAc                                                     >  3:53231/1‑112 (MQ=255)

                                                                                                                                    cTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTc              <  1:126954/149‑1 (MQ=255)

                                                                                                                                    cTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTc              <  1:390613/149‑1 (MQ=255)

                                                                                                                                     tGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCg             >  2:910/1‑149 (MQ=255)

                                                                                                                                        cATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCAt          >  1:166191/1‑149 (MQ=255)

                                                                                                                                        cATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCAt          >  2:166550/1‑149 (MQ=255)

                                                                                                                                         attattAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATc         >  3:207504/1‑149 (MQ=255)

                                                                                                                                          ttattaAAAAAGGCCAC‑CTGAAAAGTGTTGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATcc        <  3:584474/149‑1 (MQ=255)

                                                                                                                                             ttaAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGc     >  3:466453/1‑149 (MQ=255)

                                                                                                                                             ttaAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGc     >  2:952633/1‑149 (MQ=255)

                                                                                                                                              taAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATGCGACGCTTGACGCGTCTTATCCGGcc    <  1:1036540/149‑2 (MQ=255)

                                                                                                                                                aaaaaGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCaaa  <  1:975096/149‑1 (MQ=255)

GGGCACCGGGCCGTTACTGCTGGCAAAGTAAATCTGGCGCAGGGACAGCGGGCCGTTGATCAGGCGGGAGAGCAGATAGCTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAA  >  NC_000913/4148222‑4148514

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.