BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4148370 =	97 (0.830)	3 (0.030)	3/248	NT	3.2%	intergenic (‑53/+162)	yijO/eptC	AraC family putative transcriptional activator/LPS heptose I phosphoethanolamine transferase
*	?	NC_000913	4148393 =	NA (NA)	3 (0.030)	3/248	NT	3.2%	intergenic (‑76/+139)	yijO/eptC	AraC family putative transcriptional activator/LPS heptose I phosphoethanolamine transferase
Rejected: Frequency below/above cutoff threshold.

Only 100 of 121 total aligned reads displayed.

AAGTAAATCTGGCGCAGGGACAGCGGGCCGTTGATCAGGCGGGAGAGCAGATAGCTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGAT  >  NC_000913/4148247‑4148539

 aGTAAATCTGGCGCAGGGACAGCGGGCCGTTGATCAGGCGGGAGAGCAGATAGCTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAgg                                                                                                                                                 <  1:492295/149‑1 (MQ=255)

 aGTAAATCTGGCGCAGGGACAGCGGGCCGTTGATCAGGCGGGAGAGCAGATAGCTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAgg                                                                                                                                                 <  4:482026/149‑1 (MQ=255)

  gTAAATCTGGCGCAGGGACAGCGGGCCGTTGATCAGGCGGGAGAGCAGATAGCTAACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAggg                                                                                                                                                >  4:473639/1‑149 (MQ=255)

    aaaTCTGGCGCAGGGACAGCGGGCCGTTGATCAGGCGGGAGAGCAGATAGCTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGa                                                                                                                                              >  3:135027/1‑149 (MQ=255)

    aaaTCTGGCGCAGGGACAGCGGGCCGTTGATCAGGCGGGAGAGCAGATAGCTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGa                                                                                                                                              <  2:11510/149‑1 (MQ=255)

    aaaTCTGGCGCAGGGACAGCGGGCCGTTGATCAGGCGGGAGAGCAGATAGCTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGa                                                                                                                                              <  2:943665/149‑1 (MQ=255)

     aaTCTGGCGCAGGGACAGCGGGCCGTTGATCAGGCGGGAGAGCAGATAGCTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAg                                                                                                                                             <  4:776364/149‑1 (MQ=255)

       tCTGGCGCAGGGACAGCGGGCCGTTGATCAGGCGGGAGAGCAGATAGCTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAggg                                                                                                                                                >  2:270469/1‑144 (MQ=255)

       tCTGGCGCAGGGACAGCGGGCCGTTGATCAGGCGGGAGAGCAGATAGCTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAggg                                                                                                                                                <  1:270469/144‑1 (MQ=255)

       tCTGGCGCAGGGACAGCGGGCCGTTGATCAGGCGGGAGAGCAGATAGCTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGtt                                                                                                                                           <  3:308217/149‑1 (MQ=255)

        cTGGCGCAGGGACAGCGGGCCGTTGATCAGGCGGGAGAGCAGATAGCTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTc                                                                                                                                          >  2:1022546/1‑149 (MQ=255)

          ggggcAGGGACAGCGGGCCGTTGATCAGGCGGGAGAGCAGATAGCTGACGTCGTGATACCTGTTATTCCCTTAGGTATGTAAACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGa                                                                                                                                        <  4:872176/146‑1 (MQ=255)

          ggCGCAGGGACAGCGGGCCGTTGATCAGGCGGGAGAGCAGATAGCTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGa                                                                                                                                        <  1:1022546/149‑1 (MQ=255)

           gcgcAGGGACAGCGGGCCGTTGATCAGGCGGGAGAGCAGATAGCTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGAt                                                                                                                                       <  1:490629/149‑1 (MQ=255)

           gcgcAGGGACAGCGGGCCGTTGATCAGGCGGGAGAGCAGATAGCTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGAt                                                                                                                                       <  3:731638/149‑1 (MQ=255)

                 gcttgacgcgtcttatccggcctacagatcgcggcggtaggctggataaggcgtttacgccacatccggcaatacaactgccgcaatgtttacatcgaactcccctcaggccacctgaaaagtgtggcctGAGGGGAGTTCGATGTaaa                                                                                                                                  <  3:412059‑M2/19‑1 (MQ=255)

                     aGCGGGCCGTTGATCAGGCGGGAGAGCAGATAGCTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTg                                                                                                                             >  2:514320/1‑149 (MQ=255)

                      gCGGGCCGTTGATCAGGCGGGAGAGCAGATAGCTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGc                                                                                                                            <  2:335188/149‑1 (MQ=255)

                         ggCCGTTGATCAGGCGGGAGAGCAGATAGCTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGc                                                                                                                         >  2:1045986/1‑149 (MQ=255)

                             gTTGATCAGGCGGGAGAGCAGATAGCTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGtt                                                                                                                     >  2:86062/1‑149 (MQ=255)

                             gTTGATCAGGCGGGAGAGCAGATAGCTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGtt                                                                                                                     <  1:1054491/149‑1 (MQ=255)

                              ttGATCAGGCGGGAGAGCAGATAGCTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTg                                                                                                                    >  1:708079/1‑149 (MQ=255)

                                     ggCGGGAGAGCAGATAGCTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGcc                                                                                                             <  1:486004/149‑1 (MQ=255)

                                     ggCGGGAGAGCAGATAGCTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGcc                                                                                                             <  2:141302/149‑1 (MQ=255)

                                        gggAGAGCAGATAGCTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGa                                                                                                          >  3:583902/1‑149 (MQ=255)

                                          gagaGCAGATAGCTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAg                                                                                                                                                  <  3:636950/107‑1 (MQ=255)

                                          gagaGCAGATAGCTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAg                                                                                                                                                  >  4:636950/1‑107 (MQ=255)

                                           agagCAGATAGCTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGAtgt                                                                                                       >  2:740514/1‑149 (MQ=255)

                                             agCAGATAGCTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTgg                                                                                                     <  4:583902/149‑1 (MQ=255)

                                             agCAGATAGCTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTgg                                                                                                     >  3:867221/1‑149 (MQ=255)

                                                aGATAGCTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGt                                                                                                  >  1:472156/1‑149 (MQ=255)

                                                    aGCTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAAc                                                                                              <  3:998850/149‑1 (MQ=255)

                                                       tGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGcc                                                                                           >  2:220581/1‑149 (MQ=255)

                                                       tGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGcc                                                                                           >  3:362213/1‑149 (MQ=255)

                                                              taaggcgtttacgccacatccggcaatacaactgccgcaatgtttacatcgaactcccctcAGGCCAC‑CTGAAAAGTGTGGCCTGAgg                                                                                                                                                 <  2:64745‑M1/27‑1 (MQ=255)

                                                              taaggcgtttacgccacatccggcaatacaactgccgcaatgtttacatcgaactcccctcAGGCCAC‑CTGAAAAGTGTGGCCTGAgg                                                                                                                                                 >  1:64745‑M1/62‑88 (MQ=255)

                                                                   aCATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTa                                                                               >  4:230031/1‑149 (MQ=255)

                                                                     aTGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTAcc                                                                             >  2:749043/1‑149 (MQ=255)

                                                                     aTGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTAcc                                                                             >  3:233670/1‑149 (MQ=255)

                                                                       gTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCt                                                                                          >  4:611926/1‑134 (MQ=255)

                                                                       gTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCt                                                                                          <  3:611926/134‑1 (MQ=255)

                                                                       gTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTAccgc                                                                           >  1:177908/1‑149 (MQ=255)

                                                                       gTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTAccgc                                                                           <  4:297470/149‑1 (MQ=255)

                                                                          aTTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACcgccgc                                                                        <  4:482231/149‑1 (MQ=255)

                                                                             cccTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGAt                                                                     >  3:8393/1‑149 (MQ=255)

                                                                                ttAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTg                                                                  >  1:1032193/1‑149 (MQ=255)

                                                                                ttAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTg                                                                  >  4:63295/1‑149 (MQ=255)

                                                                                       tGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCg                                                           <  1:749234/149‑1 (MQ=255)

                                                                                       tGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCg                                                           >  4:330679/1‑149 (MQ=255)

                                                                                          aGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGAt                                                        >  2:126954/1‑149 (MQ=255)

                                                                                          aGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGAt                                                        <  2:1032193/149‑1 (MQ=255)

                                                                                           gACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTTGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATa                                                       >  4:584474/1‑149 (MQ=255)

                                                                                              gggAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGa                                                    >  2:335815/1‑149 (MQ=255)

                                                                                               ggAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGAc                                                   <  3:330679/149‑1 (MQ=255)

                                                                                               ggAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGAc                                                   >  1:977176/1‑149 (MQ=255)

                                                                                               ggAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGAc                                                   >  2:1050394/1‑149 (MQ=255)

                                                                                                gAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGAcg                                                  >  4:167247/1‑149 (MQ=255)

                                                                                                  aaaCAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGAcgcg                                                >  4:183831/1‑149 (MQ=255)

                                                                                                   aaCAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGt                                               >  4:250985/1‑149 (MQ=255)

                                                                                                   aaCAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGt                                               <  1:86062/149‑1 (MQ=255)

                                                                                                     cAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAg                                                               <  3:818863/131‑1 (MQ=255)

                                                                                                     cAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAg                                                               >  4:818863/1‑131 (MQ=255)

                                                                                                      aGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCaa                                            >  1:88092/1‑149 (MQ=255)

                                                                                                       gTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAg                                           >  4:284525/1‑149 (MQ=255)

                                                                                                       gTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAg                                           >  2:600564/1‑149 (MQ=255)

                                                                                                        tttacatcgaactcccctcAGGCCACACTTTTCAG‑GTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGc                                          <  3:412059‑M1/130‑1 (MQ=255)

                                                                                                        aaaCTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGc                                          >  1:693103/2‑149 (MQ=255)

                                                                                                         aaCTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTAc                                                                              <  4:53231/112‑1 (MQ=255)

                                                                                                           cTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTc                                       <  1:126954/149‑1 (MQ=255)

                                                                                                            tGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCg                                      >  2:910/1‑149 (MQ=255)

                                                                                                               cATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCAt                                   >  1:166191/1‑149 (MQ=255)

                                                                                                                attattAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATc                                  >  3:207504/1‑149 (MQ=255)

                                                                                                                 ttattaAAAAAGGCCAC‑CTGAAAAGTGTTGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATcc                                 <  3:584474/149‑1 (MQ=255)

                                                                                                                    ttaAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGc                              >  3:1042169/1‑149 (MQ=255)

                                                                                                                    ttaAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGc                              >  3:466453/1‑149 (MQ=255)

                                                                                                                    ttaAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGc                              >  2:952633/1‑149 (MQ=255)

                                                                                                                     taAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATGCGACGCTTGACGCGTCTTATCCGGcc                             <  1:1036540/149‑2 (MQ=255)

                                                                                                                       aaaaaGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCaaa                           <  1:975096/149‑1 (MQ=255)

                                                                                                                        cctcaggccacacttttcaggtggcctGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTa                                                                                        >  1:64745‑M2/28‑88 (MQ=255)

                                                                                                                        cctcaggccacacttttcaggtggcctGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTa                                                                                        <  2:64745‑M2/61‑1 (MQ=255)

                                                                                                                            GGCCAC‑CTGAAAAGTGTGGCCTAAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATc                                                                    >  2:718551‑M1/1‑103 (MQ=255)

                                                                                                                                AC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTg                  >  3:954163‑M1/1‑149 (MQ=255)

                                                                                                                                AC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTg                  <  1:977413‑M1/149‑1 (MQ=255)

                                                                                                                                AC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCAGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTg                  >  4:468210‑M1/1‑149 (MQ=255)

                                                                                                                                AC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGACGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTg                  <  4:876131‑M1/149‑1 (MQ=255)

                                                                                                                                 C‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTgg                 <  1:274702‑M1/149‑1 (MQ=255)

                                                                                                                                   ctggataGTGTGGCCCGAGGGGAGTTGGATGTAAACATTGCGGCCGTTGTATTGCCGGATGCAGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGc                >  4:667941/7‑149 (MQ=38)

                                                                                                                                   cTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGc                >  4:889598/1‑149 (MQ=255)

                                                                                                                                   cTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGc                <  1:34572/149‑1 (MQ=255)

                                                                                                                                   cTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGc                >  4:595380/1‑149 (MQ=255)

                                                                                                                                    tGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCt               >  3:427485/1‑149 (MQ=255)

                                                                                                                                      aaaaGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGa             >  1:876106/1‑149 (MQ=255)

                                                                                                                                      aaaaGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGa             <  4:466453/149‑1 (MQ=255)

                                                                                                                                        aaGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATa           <  2:595524/149‑1 (MQ=255)

                                                                                                                                        aaGTGTGGCCTGAGGAGAGTTCGATGTAAAGATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCATTATCGAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGTATCCGGCAAATAGCGCCTGGCTGATa           >  4:650885/1‑149 (MQ=39)

                                                                                                                                         aGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATaa          >  1:673302/1‑149 (MQ=255)

                                                                                                                                          gtgtGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAAt         <  4:207504/149‑1 (MQ=255)

                                                                                                                                               gcctGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTg    >  3:111104‑M2/5‑149 (MQ=255)

                                                                                                                                                cctGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGa   <  1:526244‑M2/146‑1 (MQ=255)

                                                                                                                                                cctGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGa   <  4:334245‑M2/146‑1 (MQ=255)

AAGTAAATCTGGCGCAGGGACAGCGGGCCGTTGATCAGGCGGGAGAGCAGATAGCTGACGTCGTGATACATGTTATTCCCTTAGGTATGTAGACGGGAAAACAGTAACTGGCATTATTAAAAAAGGCCAC‑CTGAAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGACGCGTCAAGCGTCGCATCCGGCAAATAGCGCCTGGCTGATAATTACTGAT  >  NC_000913/4148247‑4148539

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.