New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1786798 =	36 (0.470)	5 (0.070)	5/250	NT	13.0%	coding (315/2379 nt)	ppsA	phosphoenolpyruvate synthase
	?	NC_000913	1786816 =	33 (0.450)					coding (297/2379 nt)	ppsA	phosphoenolpyruvate synthase

AAAACCCTGAACGTTGAGGAAGGTTTCCTGCTGACCGGCAAAAGAAGCGTCCGGCATATCTTCTGCGGTGGCGGAGGAGCGCACCGCAAAAGAGGCGTTTTCGTCATCGGCGGAAAGCTGTGCATAGGCTTCGCGGATGGCGTTTTCCAGC‑TCAGGCTGGAAGGGAGTGTCGATAATCCACTGGCGGATTTGCGCGCCCGCTTTCGCAAGCTGAGTAACATCGTCAATATCCGTTTTATCCAGCAGTTCATAAATGCGCTGGTTTACGCCGCTTTGGTCCAGAAACTGGTTAA  >  NC_000913/1786654‑1786946                                                                                                                                                 |                                                                                                                                                      aaaaCCCTGAACGTTGAGGAAGGTTTCCTGCTGACCGGCAAAAGAAGCGTCCGGCATATCTTCTGCGGTGGCGGAGGAGCGCACCGCAAAAGAGGCGTTTTCGTCATCGGCGGAAAGCTGTGCATAGGCTTCGCGGATGGCGTTTTCCa                                                                                                                                                   >  3:371816/1‑149 (MQ=255) aaaaCCCTGAACGTTGAGGAAGGTTTCCTGCTGACCGGCAAAAGAAGCGTCCGGCATATCTTCTGCGGTGGCGGAGGAGCGCACCGCAAAAGAGGCGTTTTCGTCATCGGCGGAAAGCTGTGCATAGGCTTCGCGGATGGCGTTTTCCa                                                                                                                                                   <  4:257807/149‑1 (MQ=255)   aaCCCTGAACGTTGAGGAAGGTTTCCTGCTGACCGGCAAAAGAAGCGTCCGGCATATCTTCTGCGGTGGCGGAGGAGCGCACCGCAAAAGAGGCGTTTTCGTCATCGGCGGAAAGCTGTGCATAGGCTTCGCGGATGGCGTTTTCCAGc                                                                                                                                                 >  3:281349/1‑149 (MQ=255)    aCCCTGAACGTTGAGGAAGGTTTCCTGCTGACCGGCAAACGAAGCGTCCGGCATATCTTCTGCGGTGGCGGAGGAGCGCACCTCAAAAGAGGCGTTTTCGTCATCGGCGGAAAGCTGTGCATAGGCTTCGCGGATGGCGTTTTCCAGC‑t                                                                                                                                               >  2:616005/1‑149 (MQ=255)       cTGAACGTTGAGGAAGGTTTCCTGCTGACCGGCAAAAGAAGCGTCCGGCATATCTTCTGCGGTGGCGGAGGAGCGCACCGCAAAAGAGGCGTTTTCGTCATCGGCGGAAAGCTGTGCATAGGCTTCGCGGATGGCGTTTTCCAGC‑TCAg                                                                                                                                            >  3:39393/1‑149 (MQ=255)       cTGAACGTTGAGGAAGGTTTCCTGCTGACCGGCAAAAGAAGCGTCCGGCATATCTTCTGCGGTGGCGGAGGAGCGCACCGCAAAAGAGGCGTTTTCGTCATCGGCGGAAAGCTGTGCATAGGCTTCGCGGATGGCGTTTTCCAGC‑TCAg                                                                                                                                            >  2:410180/1‑149 (MQ=255)        tGAACGTTGAGGAAGGTTTCCTGCTGACCGGCAAAAGAAGCGTCCGGCATATCTTCTGCGGTGGCGGAGGAGCGCACCGCAAAAGAGGCGTTTTCGTCATCGGCGGAAAGCTGTGCATAGGCTTCGCGGATGGCGTTTTCCAGC‑TCAgg                                                                                                                                           >  3:192222/1‑149 (MQ=255)             tttaaccagtttctggaccaaagcggcgtaaaccagcgcatttatgaactgctggataaaacggatattgacgatgttactcagcttgcgaaagcgggcgcgcaaatccgccagtggattatcgacactcccTTCCAGC‑TCAGGCTGGa                                                                                                                                      <  4:361890‑M1/17‑1 (MQ=255)               taaccagtttctggaccaaagcggcgtaaaccagcgcatttatgaactgctggataaaacggatattgacgatgttactcagcttgcgaaagcgggcgcgcaaatccgccagtggattatcgacactcccTTCCAGC‑TCAGGCTGGAAg                                                                                                                                    >  3:635376‑M1/131‑149 (MQ=255)                 aGGAAGGTTTCCTGCTGACCGGCAAAAGAAGCGTCCGGCATATCTTCTGCGGTGGCGGAGGAGCGCACCGCAAAAGAGGCGTTTTCGTCATCGGCGGAAAGCTGTGCATAGGCTTCGCGGATGGCGTTTTCCAGC‑TCAGGCTGGAAggg                                                                                                                                  <  2:136956/149‑1 (MQ=255)                  ccagtttctggaccaaagcggcgtaaaccagcgcatttatgaactgctggataaaacggatattgacgatgttactcagcttgcgaaagcgggcgcgcaaatccgccagtggattatcgacactcccTTCCAGC‑TCAGGCTGGAAGGGa                                                                                                                                 >  3:361890‑M1/128‑149 (MQ=255)                   gAAGGTTTCCTGCTGACCGGCAAAAGAAGCGTCCGGCATATCTTCTGCGGTGGCGGAGGAGCGCACCGCAAAAGAGGCGTTTTCGTCATCGGCGGAAAGCTGTGCATAGGCTTCGCGGATGGCGTTTTCCAGC‑TCAGGCTGGAAGGGAg                                                                                                                                >  3:167473/1‑149 (MQ=255)                        tttCCTGCTGACCGGCAAAAGAAGCGTCCGGCATATCTTCTGCGGTGGCGGAGGAGCGCACCGCAAAAGAGGCGTTTTCGTCATCGGCGGAAAGCTGTGCATAGGCTTCGCGGATGGCGTTTTCCAGC‑TCAGGCTGGAAGGGAGTGTCg                                                                                                                           <  2:669991/149‑1 (MQ=255)                            ctgctgACCGGCAAAAGAAGCGTCCGGCATATCTTCTGCGGTGGCGGAGGAGCGCACCGCAAAAGAGGCGTTTTCGTCATCGGCGGAAAGCTGTGCATAGGCTTCGCGGATGGCGTTTTCCAGC‑TCAGGCTGGAAGGGAGTGTCGATaa                                                                                                                       <  4:502613/149‑1 (MQ=255)                                     ggCAAAAGAAGCGTCCGGCATATCTTCTGCGGTGGCGGAGGAGCGCACCGCAAAAGAGGCGTTTTCGTCATCGGCGGAAAGCTGTGCATAGGCTTCGCGGATGGCGTTTTCCAGC‑TCAGGCTGGAAGGGAGTGTCGATAATCCACTGGc                                                                                                              <  3:295813/149‑1 (MQ=255)                                       cAAAAGAAGCGTCCGGCATATCTTCTGCGGTGGCGGAGGAGCGCACCGCAAAAGAGGCGTTTTCGTCATCGGCGGAAAGCTGTGCATAGGCTTCGCGGATGGCGTTTTCCAGC‑TCAGGCTGGAAGGGAGTGTCGATAATCCACTGGCgg                                                                                                            >  3:324388/1‑149 (MQ=255)                                        aaaaGAAGCGTCCGGCATATCTTCTGCGGTGGCGGAGGCGCGCACCGCAAAAGAGGCGTTTTCGTCATCGGCGGAAAGCTGTGCATACGCTTCGCGGCTGGCGTTTTCCAGC‑TCACGCTGGAAGGGAGTGTCGATAATCCACTGGCGGa                                                                                                           >  4:245739/1‑149 (MQ=255)                                                         tatCTTCTGCGGTGGCGGAGGAGCGCACCGCAAAAGAGGCGTTTTCGTCATCGGCGGAAAGCTGTGCATAGGCTTCGCGGATGGCGTTTTCCAGC‑TCAGGCTGGAAGGGAGTGTCGATAATCCACTGGCGGATTTGCGCGCCCGCTTTc                                                                                          <  4:52952/149‑1 (MQ=255)                                                          atCTTCTGCGGTGGCGGAGGAGCGCACCGCAAAAGAGGCGTTTTCGTCATCGGCGGAAAGCTGTGCATAGGCTTCGCGGATGGCGTTTTCCAGC‑TCAGGCTGGAAGGGAGTGTCGATAATCCACTGGCGGATTTGCGCGCCCGCTTTCg                                                                                         <  4:167473/149‑1 (MQ=255)                                                             ttctGCGGTGGCGGAGGAGCGCACCGCAAAAGAGGCGTTTTCGTCATCGGCGGAAAGCTGTGCATAGGCTTCGCGGATGGCGTTTTCCAGC‑TCAGGCTGGAAGGGAGTGTCGATAATCCACTGGCGGATTTGCGCGCCCGCTTTCGCaa                                                                                      >  1:362250/1‑149 (MQ=255)                                                                  cGGTGGCGGAGGAGCGCACCGCAAAAGAGGCGTTTTCGTCATCGGCGGAAAGCTGTGCATAGGCTTCGCGGATGGCGTTTTCCAGC‑TCAGGCTGGAAGGGAGTGTCGATAATCCACTGGCGGATTTgcg                                                                                                     >  1:4047/1‑129 (MQ=255)                                                                  cGGTGGCGGAGGAGCGCACCGCAAAAGAGGCGTTTTCGTCATCGGCGGAAAGCTGTGCATAGGCTTCGCGGATGGCGTTTTCCAGC‑TCAGGCTGGAAGGGAGTGTCGATAATCCACTGGCGGATTTgcg                                                                                                     <  2:4047/129‑1 (MQ=255)                                                                  cGGTGGCGGAGGAGCGCACCGCAAAAGAGGCGTTTTCGTCATCGGCGGAAAGCTGTGCATAGGCTTCGCGGATGGCGTTTTCCAGC‑TCAGGCTGGAAGGGAGTGTCGATAATCCACTGGCGGATTTGCGCGCCCGCTTTCGCAAGCTGa                                                                                 <  1:410180/149‑1 (MQ=255)                                                                  cGGTGGCGGAGGAGCGCACCGCAAAAGAGGCGTTTTCGTCATCGGCGGAAAGCTGTGCATAGGCTTCGCGGATGGCGTTTTCCAGC‑TCAGGCTGGAAGGGAGTGTCGATAATCCACTGGCGGATTTGCGCGCCCGCTTTCGCAAGCTGa                                                                                 <  2:292715/149‑1 (MQ=255)                                                                         ggaggaGCGCACCGCAAAAGAGGCGTTTTCGTCATCGGCGGAAAGCTGTGCATAGGCTTCGCGGATGGCGTTTTCCAGC‑TCAGGCTGGAAGGGAGTGTCGATAATCCACTGGCGGATTTGCGCGCCCGCTTTCGCAAGCTGAGTAACAt                                                                          >  2:670557/1‑149 (MQ=255)                                                                          gaggagCGCACCGCAAAAGAGGCGTTTTCGTCATCGGCGGAAAGCTGTGCATAGGCTTCGCGGATGGCGTTTTCCAGC‑TCAGGCTGGAAGGGAGTGTCGATAATCCACTGGCGGATTTGCGCGCCCGCGTTCGCAAGCTGAGTAACATc                                                                         <  4:363065/149‑1 (MQ=255)                                                                            ggagCGCACCGCAAAAGAGGCGTTTTCGTCATCGGCGGAAAGCTGTGCATAGGCTTCGCGGATGGCGTTTTCCAGC‑TCAGGCTGGAAGGGAGTGTCGATAATCCACTGGCGGATTTGCGCGCCCGCTTTCGCAAGCTGAGTAACATCGt                                                                       <  3:598031/149‑1 (MQ=255)                                                                            ggagCGCACCGCAAAAGAGGCGTTTTCGTCATCGGCGGAAAGCTGTGCATAGGCTTCGCGGATGGCGTTTTCCAGC‑TCAGGCTGGAAGGGAGTGTCGATAATCCACTGGCGGATTTGCGCGCCCGCTTTCGCAAGCTGAGTAACATCGt                                                                       <  1:155637/149‑1 (MQ=255)                                                                             gagCGCACCGCAAAAGAGGCGTTTTCGTCATCGGCGGAAAGCTGTGCATAGGCTTCGCGGATGGCGTTTTCCAGC‑TCAGGCTGGAAGGGAGTGTCGATAATCCACTGGCGGATTTGCGCGCCCGCTTTCGCAAGCTGAGTAACATCGTc                                                                      >  2:686194/1‑149 (MQ=255)                                                                             gagCGCACCGCAAAAGAGGCGTTTTCGTCATCGGCGGAAAGCTGTGCATAGGCTTCGCGGATGGCGTTTTCCAGC‑TCAGGCTGGAAGGGAGTGTCGATAATCCACTGGCGGATTTGCGCGCCCGCTTTCGCAAGCTGAGTAACATCGTc                                                                      <  3:630730/149‑1 (MQ=255)                                                                                 gcACCGCAAAAGAGGCGTTTTCGTCATCGGCGGAAAGCTGTGCATAGGCTTCGCGGATGGCGTTTTCCAGC‑TCAGGCTGGAAGGGAGTGTCGATAATCCACTGGCGGATTTGCGCGCCCGCTTTCGCAAGCTGAGTAACATCGTCAata                                                                  >  4:284285/1‑149 (MQ=255)                                                                                 gcACCGCAAAAGAGGCGTTTTCGTCATCGGCGGAAAGCTGTGCATAGGCTTCGCGGATGGCGTTTTCCAGC‑TCAGGCTGGAAGGGAGTGTCGATAATCCACTGGCGGATTTGCGCGCCCGCTTTCGCAAGCTGAGTAACATCGTCAata                                                                  >  4:219002/1‑149 (MQ=255)                                                                                   aCCGCGAAAGAGGCGTTTTCGTCATCGGCGGAAAGCTGTATTTAGGCTTCTCGGATGGCGTTTTCCAGC‑TCAGGCTGGAAGGGAGTGTAGATAATCGACTCGCGGATTTCCGCGCCCGCTTTCGCGAGCTGAGTAACATCGGCAatacc                                                                >  2:460407/1‑147 (MQ=255)                                                                                       cAAAAGAGGCGTTTTCGTCATCGGCGGAAAGCTGTGCATAGGCTTCGCGGATGGCGTTTTCCAGC‑TCAGGCTGGAAGGGAGTGTCGATAATCCACTGGCGGATTTGCGCGCCCGCTTTCGCAAGCTGAGTAACATCGTCAATATCCGtt                                                            <  1:670557/149‑1 (MQ=255)                                                                                              ggCGTTTTCGTCATCGGCGGAAAGCTGTGCATAGGCTTCGCGGATGGCGTTTTCCAGC‑TCAGGCTGGAAGGGAGTGTCGATAATCCACTGGCGGATTTGCGCGCCCGCTTTCGCAAGCTGAGTAACATCGTCAATATCCGTTTTATCca                                                     <  3:508209/149‑1 (MQ=255)                                                                                                           tCGGCGGAAAGCTGTGCAAAGGCTTCGCGGAGGACGTTTTCCAGC‑TCAGGCTGGAAGGGAGTGTCGATAATCCACTGGGGGATTTGCACGCCCGCTTTCGCAAGCTGAGTAACATCCTCAATATCCGTTTTTTCCAGCAGTTCATAAAt                                        >  4:58668/1‑149 (MQ=255)                                                                                                             ggcggAAAGCTGTGCATAGGCTTCGCGGATGGCGTTTTCCAGC‑TCAGGCTGGAAGGGAGTGTCGATAATCCACTGGCGGATTTGCGCGCCCGCTTTCGCAAGCTGAGTAACATCGTCAATATCCGTTTTATCCAGCAGTTCATaaa                                         >  2:82524/1‑146 (MQ=255)                                                                                                             ggcggAAAGCTGTGCATAGGCTTCGCGGATGGCGTTTTCCAGC‑TCAGGCTGGAAGGGAGTGTCGATAATCCACTGGCGGATTTGCGCGCCCGCTTTCGCAAGCTGAGTAACATCGTCAATATCCGTTTTATCCAGCAGTTCATaaa                                         <  1:82524/146‑1 (MQ=255)                                                                                                                       tgtgCATAGGCTTCGCGGATGGCGTTTTCCAGC‑TCAGGCTGGAAGGGAGTGTCGATAATCCACTGGCGGATTTGCGCGCCCGCTTTCGCAAGCTGAGTAACATCGTCAATATCCGTTTTATCCAGCAGTTCATAAATGCGCTGGTTTAc                            >  1:649196/1‑149 (MQ=255)                                                                                                                                 cTTCGCGGATGGCGTTTTCCAGC‑TCAGGCTGGAAGGGAGTGTCGATAATCCACTGGCGGATTTGCGCGCCCGCTTTCGCAAGCTGAGTAACATCGTCAATATCCGTTTTATCCAGCAGTTCATAAATGCGCTGGTTTACGCCGCTTTgg                  <  3:219002/149‑1 (MQ=255)                                                                                                                                  ttCGCGGATGGCGTTTTCCAGC‑TCAGGCTGGAAGGGAGTGTCGATAATCCACTGGCGGATTTGCGCGCCCGCTTTCGCAAGCTGAGTAACATCGTCAATATCCGTTTTATCCAGCAGTTCATAAATGCGCTGGTTTACGCCGCTTTGGt                 <  4:238766/149‑1 (MQ=255)                                                                                                                                         acactcccTTCCAGCCTGAG‑CTGGAAGGGAGTGTCGATAATCCACTGGCGGATTTGCGCGCCCGCTTTCGCAAGCTGAGTAACATCGTCAat                                                                   >  3:285283‑M1/9‑92 (MQ=255)                                                                                                                                         acactcccTTCCAGC‑CTGAGCTGGAAGGGAGTGTCGATAATCCACTGGCGGATTTGCGCGCCCGCTTTCGCAAGCTGAGTAACATCGTCAat                                                                   <  4:285283‑M1/84‑1 (MQ=255)                                                                                                                                            gCGTTTTCCAGC‑TCAGGCTGGAAGGGAGTGTCGATAATCCACTGGCGGATTTGCGCGCCCGCTTTCGCAAGCTGAGTAACATCGTCAATATCCGTTTTATCCAGCAGTTCATAAATGCGCTGGTTTACGCCGCTTTGGTCCAGAAACTg       <  4:371816/149‑1 (MQ=255)                                                                                                                                             cGTTTTCCAGC‑TCAGGCTGGAAGGGAGTGTCGATAATCCACTGGCGGATTTGCGCGCCCGCTTTCGCAAGCTGAGTAACATCGTCAATATCCGTTTTATCCAGCAGTTCATAAATGCGCTGGTTTACGCCGCTTTGGTCCAGAAACTgg      <  4:570195/149‑1 (MQ=255)                                                                                                                                              gTTTTCCAGC‑TCAGGCTGGAAGGGAGTGTCGATAATCCACTGGCGGATTTGCGCGCCCGCTTTCGCAAGCTGAGTAACATCGTCAATATCCGTTTTATCCAGCAGTTCATAAATGCGCTGGTTTACGCCGCTTTGGTCCAGAAACTGGt     <  2:259029/149‑1 (MQ=255)                                                                                                                                              gTTTTCCAGC‑TCAGGCTGGAAGGGAGTGTCGATAATCCACTGGCGGATTTGCGCGCCCGCTTTCGCAAGCTGAGTAACATCGTCAATATCCGTTTTATCCAGCAGTTCATAAATGCGCTGGTTTACGCCGCTTTGGTCCAGAAACTGGt     >  1:452719/1‑149 (MQ=255)                                                                                                                                                 TTCCAGC‑TCAGGCTGGAAGGGAGTGTCGATAATCCACTGGCGGATTTGCGCGCCCGCTTTCGCAAGCTGAGTAACATCGTCAATATCCGTTTTATCCAGCAGTTCATAAATGCGCTGGTTTACGCCGCTTTGGTCCAGAAACTGGTTaa  >  1:62484‑M1/1‑149 (MQ=255)                                                                                                                                                 |                                                                                                                                                      AAAACCCTGAACGTTGAGGAAGGTTTCCTGCTGACCGGCAAAAGAAGCGTCCGGCATATCTTCTGCGGTGGCGGAGGAGCGCACCGCAAAAGAGGCGTTTTCGTCATCGGCGGAAAGCTGTGCATAGGCTTCGCGGATGGCGTTTTCCAGC‑TCAGGCTGGAAGGGAGTGTCGATAATCCACTGGCGGATTTGCGCGCCCGCTTTCGCAAGCTGAGTAACATCGTCAATATCCGTTTTATCCAGCAGTTCATAAATGCGCTGGTTTACGCCGCTTTGGTCCAGAAACTGGTTAA  >  NC_000913/1786654‑1786946

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.