New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1786798 =	36 (0.470)	5 (0.070)	5/250	NT	13.0%	coding (315/2379 nt)	ppsA	phosphoenolpyruvate synthase
	?	NC_000913	1786816 =	33 (0.450)					coding (297/2379 nt)	ppsA	phosphoenolpyruvate synthase

TGAGGAAGGTTTCCTGCTGACCGGCAAAAGAAGCGTCCGGCATATCTTCTGCGGTGGCGGAGGAGCGCACCGCAAAAGAGGCGTTTTCGTCATCGGCGGAAAGCTGTGCATAGGCTTCGCGGATGGCGTTTTCCAGC‑TCAGGCTGGAAGGGAGTGTCGATAATCCACTGGCGGATTTGCGCGCCCGCTTTCGCAAGCTGAGTAACATCGTCAATATCCGTTTTATCCAGCAGTTCATAAATGCGCTGGTTTACGCCGCTTTGGTCCAGAAACTGGTTAAACGCGTCGGCGGTTGTGG  >  NC_000913/1786668‑1786964                                                                                                                                                      |                                                                                                                                                     taaccagtttctggaccaaagcggcgtaaaccagcgcatttatgaactgctggataaaacggatattgacgatgttactcagcttgcgaaagcgggcgcgcaaatccgccagtggattatcgacactcccTTCCAGC‑TCAGGCTGGAAg                                                                                                                                                      >  3:635376‑M1/131‑149 (MQ=255)   aGGAAGGTTTCCTGCTGACCGGCAAAAGAAGCGTCCGGCATATCTTCTGCGGTGGCGGAGGAGCGCACCGCAAAAGAGGCGTTTTCGTCATCGGCGGAAAGCTGTGCATAGGCTTCGCGGATGGCGTTTTCCAGC‑TCAGGCTGGAAggg                                                                                                                                                    <  2:136956/149‑1 (MQ=255)    ccagtttctggaccaaagcggcgtaaaccagcgcatttatgaactgctggataaaacggatattgacgatgttactcagcttgcgaaagcgggcgcgcaaatccgccagtggattatcgacactcccTTCCAGC‑TCAGGCTGGAAGGGa                                                                                                                                                   >  3:361890‑M1/128‑149 (MQ=255)     gAAGGTTTCCTGCTGACCGGCAAAAGAAGCGTCCGGCATATCTTCTGCGGTGGCGGAGGAGCGCACCGCAAAAGAGGCGTTTTCGTCATCGGCGGAAAGCTGTGCATAGGCTTCGCGGATGGCGTTTTCCAGC‑TCAGGCTGGAAGGGAg                                                                                                                                                  >  3:167473/1‑149 (MQ=255)          tttCCTGCTGACCGGCAAAAGAAGCGTCCGGCATATCTTCTGCGGTGGCGGAGGAGCGCACCGCAAAAGAGGCGTTTTCGTCATCGGCGGAAAGCTGTGCATAGGCTTCGCGGATGGCGTTTTCCAGC‑TCAGGCTGGAAGGGAGTGTCg                                                                                                                                             <  2:669991/149‑1 (MQ=255)              ctgctgACCGGCAAAAGAAGCGTCCGGCATATCTTCTGCGGTGGCGGAGGAGCGCACCGCAAAAGAGGCGTTTTCGTCATCGGCGGAAAGCTGTGCATAGGCTTCGCGGATGGCGTTTTCCAGC‑TCAGGCTGGAAGGGAGTGTCGATaa                                                                                                                                         <  4:502613/149‑1 (MQ=255)                       ggCAAAAGAAGCGTCCGGCATATCTTCTGCGGTGGCGGAGGAGCGCACCGCAAAAGAGGCGTTTTCGTCATCGGCGGAAAGCTGTGCATAGGCTTCGCGGATGGCGTTTTCCAGC‑TCAGGCTGGAAGGGAGTGTCGATAATCCACTGGc                                                                                                                                <  3:295813/149‑1 (MQ=255)                         cAAAAGAAGCGTCCGGCATATCTTCTGCGGTGGCGGAGGAGCGCACCGCAAAAGAGGCGTTTTCGTCATCGGCGGAAAGCTGTGCATAGGCTTCGCGGATGGCGTTTTCCAGC‑TCAGGCTGGAAGGGAGTGTCGATAATCCACTGGCgg                                                                                                                              >  3:324388/1‑149 (MQ=255)                          aaaaGAAGCGTCCGGCATATCTTCTGCGGTGGCGGAGGCGCGCACCGCAAAAGAGGCGTTTTCGTCATCGGCGGAAAGCTGTGCATACGCTTCGCGGCTGGCGTTTTCCAGC‑TCACGCTGGAAGGGAGTGTCGATAATCCACTGGCGGa                                                                                                                             >  4:245739/1‑149 (MQ=255)                                           tatCTTCTGCGGTGGCGGAGGAGCGCACCGCAAAAGAGGCGTTTTCGTCATCGGCGGAAAGCTGTGCATAGGCTTCGCGGATGGCGTTTTCCAGC‑TCAGGCTGGAAGGGAGTGTCGATAATCCACTGGCGGATTTGCGCGCCCGCTTTc                                                                                                            <  4:52952/149‑1 (MQ=255)                                            atCTTCTGCGGTGGCGGAGGAGCGCACCGCAAAAGAGGCGTTTTCGTCATCGGCGGAAAGCTGTGCATAGGCTTCGCGGATGGCGTTTTCCAGC‑TCAGGCTGGAAGGGAGTGTCGATAATCCACTGGCGGATTTGCGCGCCCGCTTTCg                                                                                                           <  4:167473/149‑1 (MQ=255)                                               ttctGCGGTGGCGGAGGAGCGCACCGCAAAAGAGGCGTTTTCGTCATCGGCGGAAAGCTGTGCATAGGCTTCGCGGATGGCGTTTTCCAGC‑TCAGGCTGGAAGGGAGTGTCGATAATCCACTGGCGGATTTGCGCGCCCGCTTTCGCaa                                                                                                        >  1:362250/1‑149 (MQ=255)                                                    cGGTGGCGGAGGAGCGCACCGCAAAAGAGGCGTTTTCGTCATCGGCGGAAAGCTGTGCATAGGCTTCGCGGATGGCGTTTTCCAGC‑TCAGGCTGGAAGGGAGTGTCGATAATCCACTGGCGGATTTgcg                                                                                                                       <  2:4047/129‑1 (MQ=255)                                                    cGGTGGCGGAGGAGCGCACCGCAAAAGAGGCGTTTTCGTCATCGGCGGAAAGCTGTGCATAGGCTTCGCGGATGGCGTTTTCCAGC‑TCAGGCTGGAAGGGAGTGTCGATAATCCACTGGCGGATTTgcg                                                                                                                       >  1:4047/1‑129 (MQ=255)                                                    cGGTGGCGGAGGAGCGCACCGCAAAAGAGGCGTTTTCGTCATCGGCGGAAAGCTGTGCATAGGCTTCGCGGATGGCGTTTTCCAGC‑TCAGGCTGGAAGGGAGTGTCGATAATCCACTGGCGGATTTGCGCGCCCGCTTTCGCAAGCTGa                                                                                                   <  1:410180/149‑1 (MQ=255)                                                    cGGTGGCGGAGGAGCGCACCGCAAAAGAGGCGTTTTCGTCATCGGCGGAAAGCTGTGCATAGGCTTCGCGGATGGCGTTTTCCAGC‑TCAGGCTGGAAGGGAGTGTCGATAATCCACTGGCGGATTTGCGCGCCCGCTTTCGCAAGCTGa                                                                                                   <  2:292715/149‑1 (MQ=255)                                                           ggaggaGCGCACCGCAAAAGAGGCGTTTTCGTCATCGGCGGAAAGCTGTGCATAGGCTTCGCGGATGGCGTTTTCCAGC‑TCAGGCTGGAAGGGAGTGTCGATAATCCACTGGCGGATTTGCGCGCCCGCTTTCGCAAGCTGAGTAACAt                                                                                            >  2:670557/1‑149 (MQ=255)                                                            gaggagCGCACCGCAAAAGAGGCGTTTTCGTCATCGGCGGAAAGCTGTGCATAGGCTTCGCGGATGGCGTTTTCCAGC‑TCAGGCTGGAAGGGAGTGTCGATAATCCACTGGCGGATTTGCGCGCCCGCGTTCGCAAGCTGAGTAACATc                                                                                           <  4:363065/149‑1 (MQ=255)                                                              ggagCGCACCGCAAAAGAGGCGTTTTCGTCATCGGCGGAAAGCTGTGCATAGGCTTCGCGGATGGCGTTTTCCAGC‑TCAGGCTGGAAGGGAGTGTCGATAATCCACTGGCGGATTTGCGCGCCCGCTTTCGCAAGCTGAGTAACATCGt                                                                                         <  1:155637/149‑1 (MQ=255)                                                              ggagCGCACCGCAAAAGAGGCGTTTTCGTCATCGGCGGAAAGCTGTGCATAGGCTTCGCGGATGGCGTTTTCCAGC‑TCAGGCTGGAAGGGAGTGTCGATAATCCACTGGCGGATTTGCGCGCCCGCTTTCGCAAGCTGAGTAACATCGt                                                                                         <  3:598031/149‑1 (MQ=255)                                                               gagCGCACCGCAAAAGAGGCGTTTTCGTCATCGGCGGAAAGCTGTGCATAGGCTTCGCGGATGGCGTTTTCCAGC‑TCAGGCTGGAAGGGAGTGTCGATAATCCACTGGCGGATTTGCGCGCCCGCTTTCGCAAGCTGAGTAACATCGTc                                                                                        <  3:630730/149‑1 (MQ=255)                                                               gagCGCACCGCAAAAGAGGCGTTTTCGTCATCGGCGGAAAGCTGTGCATAGGCTTCGCGGATGGCGTTTTCCAGC‑TCAGGCTGGAAGGGAGTGTCGATAATCCACTGGCGGATTTGCGCGCCCGCTTTCGCAAGCTGAGTAACATCGTc                                                                                        >  2:686194/1‑149 (MQ=255)                                                                  attgacgatgttactcagcttgcgaaagcgggcgcgcaaatccgccagtggattatcgacactcccttccagctcaggctggaaGGGAgtgt                                                                                                                                               >  3:285283‑M2/85‑92 (MQ=255)                                                                  attgacgatgttactcagcttgcgaaagcgggcgcgcaaatccgccagtggattatcgacactcccttccagctcaggctggaaGGGAgtgt                                                                                                                                               <  4:285283‑M2/8‑1 (MQ=255)                                                                   gcACCGCAAAAGAGGCGTTTTCGTCATCGGCGGAAAGCTGTGCATAGGCTTCGCGGATGGCGTTTTCCAGC‑TCAGGCTGGAAGGGAGTGTCGATAATCCACTGGCGGATTTGCGCGCCCGCTTTCGCAAGCTGAGTAACATCGTCAata                                                                                    >  4:284285/1‑149 (MQ=255)                                                                   gcACCGCAAAAGAGGCGTTTTCGTCATCGGCGGAAAGCTGTGCATAGGCTTCGCGGATGGCGTTTTCCAGC‑TCAGGCTGGAAGGGAGTGTCGATAATCCACTGGCGGATTTGCGCGCCCGCTTTCGCAAGCTGAGTAACATCGTCAata                                                                                    >  4:219002/1‑149 (MQ=255)                                                                     aCCGCGAAAGAGGCGTTTTCGTCATCGGCGGAAAGCTGTATTTAGGCTTCTCGGATGGCGTTTTCCAGC‑TCAGGCTGGAAGGGAGTGTAGATAATCGACTCGCGGATTTCCGCGCCCGCTTTCGCGAGCTGAGTAACATCGGCAatacc                                                                                  >  2:460407/1‑147 (MQ=255)                                                                         cAAAAGAGGCGTTTTCGTCATCGGCGGAAAGCTGTGCATAGGCTTCGCGGATGGCGTTTTCCAGC‑TCAGGCTGGAAGGGAGTGTCGATAATCCACTGGCGGATTTGCGCGCCCGCTTTCGCAAGCTGAGTAACATCGTCAATATCCGtt                                                                              <  1:670557/149‑1 (MQ=255)                                                                                ggCGTTTTCGTCATCGGCGGAAAGCTGTGCATAGGCTTCGCGGATGGCGTTTTCCAGC‑TCAGGCTGGAAGGGAGTGTCGATAATCCACTGGCGGATTTGCGCGCCCGCTTTCGCAAGCTGAGTAACATCGTCAATATCCGTTTTATCca                                                                       <  3:508209/149‑1 (MQ=255)                                                                                             tCGGCGGAAAGCTGTGCAAAGGCTTCGCGGAGGACGTTTTCCAGC‑TCAGGCTGGAAGGGAGTGTCGATAATCCACTGGGGGATTTGCACGCCCGCTTTCGCAAGCTGAGTAACATCCTCAATATCCGTTTTTTCCAGCAGTTCATAAAt                                                          >  4:58668/1‑149 (MQ=255)                                                                                               ggcggAAAGCTGTGCATAGGCTTCGCGGATGGCGTTTTCCAGC‑TCAGGCTGGAAGGGAGTGTCGATAATCCACTGGCGGATTTGCGCGCCCGCTTTCGCAAGCTGAGTAACATCGTCAATATCCGTTTTATCCAGCAGTTCATaaa                                                           <  1:82524/146‑1 (MQ=255)                                                                                               ggcggAAAGCTGTGCATAGGCTTCGCGGATGGCGTTTTCCAGC‑TCAGGCTGGAAGGGAGTGTCGATAATCCACTGGCGGATTTGCGCGCCCGCTTTCGCAAGCTGAGTAACATCGTCAATATCCGTTTTATCCAGCAGTTCATaaa                                                           >  2:82524/1‑146 (MQ=255)                                                                                                         tgtgCATAGGCTTCGCGGATGGCGTTTTCCAGC‑TCAGGCTGGAAGGGAGTGTCGATAATCCACTGGCGGATTTGCGCGCCCGCTTTCGCAAGCTGAGTAACATCGTCAATATCCGTTTTATCCAGCAGTTCATAAATGCGCTGGTTTAc                                              >  1:649196/1‑149 (MQ=255)                                                                                                                   cTTCGCGGATGGCGTTTTCCAGC‑TCAGGCTGGAAGGGAGTGTCGATAATCCACTGGCGGATTTGCGCGCCCGCTTTCGCAAGCTGAGTAACATCGTCAATATCCGTTTTATCCAGCAGTTCATAAATGCGCTGGTTTACGCCGCTTTgg                                    <  3:219002/149‑1 (MQ=255)                                                                                                                    ttCGCGGATGGCGTTTTCCAGC‑TCAGGCTGGAAGGGAGTGTCGATAATCCACTGGCGGATTTGCGCGCCCGCTTTCGCAAGCTGAGTAACATCGTCAATATCCGTTTTATCCAGCAGTTCATAAATGCGCTGGTTTACGCCGCTTTGGt                                   <  4:238766/149‑1 (MQ=255)                                                                                                                           acactcccTTCCAGCCTGAG‑CTGGAAGGGAGTGTCGATAATCCACTGGCGGATTTGCGCGCCCGCTTTCGCAAGCTGAGTAACATCGTCAat                                                                                     >  3:285283‑M1/9‑92 (MQ=255)                                                                                                                           acactcccTTCCAGC‑CTGAGCTGGAAGGGAGTGTCGATAATCCACTGGCGGATTTGCGCGCCCGCTTTCGCAAGCTGAGTAACATCGTCAat                                                                                     <  4:285283‑M1/84‑1 (MQ=255)                                                                                                                              gCGTTTTCCAGC‑TCAGGCTGGAAGGGAGTGTCGATAATCCACTGGCGGATTTGCGCGCCCGCTTTCGCAAGCTGAGTAACATCGTCAATATCCGTTTTATCCAGCAGTTCATAAATGCGCTGGTTTACGCCGCTTTGGTCCAGAAACTg                         <  4:371816/149‑1 (MQ=255)                                                                                                                               cGTTTTCCAGC‑TCAGGCTGGAAGGGAGTGTCGATAATCCACTGGCGGATTTGCGCGCCCGCTTTCGCAAGCTGAGTAACATCGTCAATATCCGTTTTATCCAGCAGTTCATAAATGCGCTGGTTTACGCCGCTTTGGTCCAGAAACTgg                        <  4:570195/149‑1 (MQ=255)                                                                                                                                tcccttccagcctgagctggaaGGGAGTGTCGATAATCCACTGGCGGATTTGCGCGCCCGCTTTCGCAAGCTGAGTAACATCGTCAATATCCGTTTTATCCAGCAGTTCATAAATGCGCTGGTTTACGCCGCTTTGGTCCAGAAACTgg                        >  3:361890‑M2/23‑149 (MQ=255)                                                                                                                                gTTTTCCAGC‑TCAGGCTGGAAGGGAGTGTCGATAATCCACTGGCGGATTTGCGCGCCCGCTTTCGCAAGCTGAGTAACATCGTCAATATCCGTTTTATCCAGCAGTTCATAAATGCGCTGGTTTACGCCGCTTTGGTCCAGAAACTGGt                       >  1:452719/1‑149 (MQ=255)                                                                                                                                gTTTTCCAGC‑TCAGGCTGGAAGGGAGTGTCGATAATCCACTGGCGGATTTGCGCGCCCGCTTTCGCAAGCTGAGTAACATCGTCAATATCCGTTTTATCCAGCAGTTCATAAATGCGCTGGTTTACGCCGCTTTGGTCCAGAAACTGGt                       <  2:259029/149‑1 (MQ=255)                                                                                                                                   cttccagcctgagctggaaGGGAGTGTCGATAATCCACTGGCGGATTTGCGCGCCCGCTTTCGCAAGCTGAGTAACATCGTCAATATCCGTTTTATCCAGCAGTTCATAAATGCGCTGGTTTACGCCGCTTTGGTCCAGAAACTGGTTa                     >  3:635376‑M2/20‑149 (MQ=255)                                                                                                                                   TTCCAGC‑TCAGGCTGGAAGGGAGTGTCGATAATCCACTGGCGGATTTGCGCGCCCGCTTTCGCAAGCTGAGTAACATCGTCAATATCCGTTTTATCCAGCAGTTCATAAATGCGCTGGTTTACGCCGCTTTGGTCCAGAAACTGGTTaa                    >  1:62484‑M1/1‑149 (MQ=255)                                                                                                                                     tccagcctgagctggaaGGGAGTGTCGATAATCCACTGGCGGATTTGCGCGCCCGCTTTCGCAAGCTGAGTAACATCGTCAATATCCGTTTTATCCAGCAGTTCATAAATGCGCTGGTTTACGCCGCTTTGGTCCAGAAACTGGTTaaa                   <  4:361890‑M2/132‑1 (MQ=255)                                                                                                                                                      gggAGTGTCGATAATCCACTGGCGGATTTGCGCGCCCGCTTTCGCAAGCTGAGTAACATCGTCAATATCCGTTTTATCCAGCAGTTCATAAATGCGCTGGTTTACGCCGCTTTGGTCCAGAAACTGGTTAAACGCGTCGGCGGTTGTgg  <  4:165457/149‑1 (MQ=255)                                                                                                                                                      gggAGTGTCGATAATCCACTGGCGGATTTGCGCGCCCGCTTTCGCAAGCTGAGTAACATCGTCAATATCCGTTTTATCCAGCAGTTCATAAATGCGCTGGTTTACGCCGCTTTGGTCCAGAAACTGGTTAAACGCGTCGGCGGTTGTgg  >  1:507803/1‑149 (MQ=255)                                                                                                                                                      gggAGTGTCGATAATCCACTGGCGGATTTGCGCGCCCGCTTTCGCAAGCTGAGTAACATCGTCAATATCCGTTTTATCCAGCAGTTCATAAATGCGCTGGTTTACGCCGCTTTGGTCCAGAAACTGGTTAAACGCGTCGGCGGTTGTgg  <  2:599464/149‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                     TGAGGAAGGTTTCCTGCTGACCGGCAAAAGAAGCGTCCGGCATATCTTCTGCGGTGGCGGAGGAGCGCACCGCAAAAGAGGCGTTTTCGTCATCGGCGGAAAGCTGTGCATAGGCTTCGCGGATGGCGTTTTCCAGC‑TCAGGCTGGAAGGGAGTGTCGATAATCCACTGGCGGATTTGCGCGCCCGCTTTCGCAAGCTGAGTAACATCGTCAATATCCGTTTTATCCAGCAGTTCATAAATGCGCTGGTTTACGCCGCTTTGGTCCAGAAACTGGTTAAACGCGTCGGCGGTTGTGG  >  NC_000913/1786668‑1786964

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.