New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 14186	45 (1.080)	4 (0.100)	4/240	NT	8.5%	intergenic (+87/‑563)	serS/azlC	serine‑‑tRNA ligase/LIV‑E family branched chain amino acid exporter
	?	CP000730	= 14200	44 (1.140)					intergenic (+101/‑549)	serS/azlC	serine‑‑tRNA ligase/LIV‑E family branched chain amino acid exporter

TTAGTACCATTTATGGGTGGTAAAACACAAATTTCAAAACCAGTTAAATAAAGGCTTTAGCTACAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTGGTTTAATGGGGTGAACGCATTTCATTATAGCAACAATACGGGATAATTATGATGA  >  CP000730/14049‑14324                                                                                                                                          |                                                                                                                                            ttAGTACCATTTATGGGTGGTAAAACACAAATTTCAAAACCAGTTAAATAAAGGCTTTAGCTACAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGa                                                                                                                                          <  2:276733/141‑1 (MQ=255)  tAGTACCATTTATGGGTGGTAAAACACAAATTTCAAAACCAGTTAAATAAAGGCTTTAGCTACAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGAc                                                                                                                                         >  2:172078/1‑141 (MQ=255)    gTACCATTTATGGGTGGTAAAACACAAATTTCAAAACCAGTTAAATAAAGGCTTTAGCTACAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGa                                                                                                                                       <  1:37678/141‑1 (MQ=255)              tGGGTGGTAAAACACAAATTTCAAAACCAGTTAAATAAAGGCTTTAGCTACAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGcc                                                                                                                             >  1:61861‑M2/1‑139 (MQ=255)              tGGGTGGTAAAACACAAATTTCAAAACCAGTTAAATAAAGGCTTTAGCTACAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGcc                                                                                                                             <  1:338800‑M2/141‑3 (MQ=255)                ggtggtAAAACACAAATTTCAAAACCAGTTAAATAAAGGCTTTAGCTACAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTACATAATATTTTAACAAGTGGTGACGAAGCTGTCGccac                                                                                                                           <  2:210981‑M2/141‑5 (MQ=255)                         acacAAATTTCAAAACCAGTTAAATAAAGGCTTTAGCTACAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTtgt                                                                                                                  <  2:255379/141‑1 (MQ=255)                          cacaAATTTCAAAACCAGTTAAATAAAGGCTTTAGCTACAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTtgtg                                                                                                                 <  1:360570/141‑1 (MQ=255)                               aTTTCAAAACCAGTTAAATAAAGGCTTTAGCTACAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTTGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTa                                                                                                            <  1:13378/141‑1 (MQ=255)                               aTTTCAAAACCAGTTAAATAAAGGCTTTAGCTACAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTa                                                                                                            >  2:200323/1‑141 (MQ=255)                                  tCAAAACCAGTTAAATAAAGGCTTTAGCTACAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTa‑aaa                                                                                                        >  2:163976/1‑141 (MQ=255)                                    aaaaCCAGTTAAATAAAGGCTTTAGCTACAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AAAGt                                                                                                      >  1:388850/1‑141 (MQ=255)                                    aaaaCCAGTTAAATAAAGGATTTAGCTACAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AAAGt                                                                                                      >  1:322012/1‑141 (MQ=255)                                      aaCCAGTTAAATAAAGGCTTTAGCTACAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AAAGtat                                                                                                    <  1:146832/141‑1 (MQ=255)                                          aGTTAAATAAAGGCTTTAGCTACAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AAAGTataata                                                                                                >  1:12841/1‑141 (MQ=255)                                            ttAAATAAAGGCTTTAGCTACAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AAAGTATAATAGt                                                                                              <  1:247362/141‑1 (MQ=255)                                               aataaaGGCTTTAGCTACAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AAAGTATAATAGTGAg                                                                                           <  2:129989/141‑1 (MQ=255)                                                ataaaGGCTTTAGCTACAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGCCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AACGTATAAAAGTGAGc                                                                                          >  2:471264/1‑141 (MQ=255)                                                      gCTTTAGCTACAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AAAGTATAATAGTGAGCCAATGc                                                                                    <  1:74436/141‑1 (MQ=255)                                                           aGCTACAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AAAGTATAATAGTGAGCCAATGCACATa                                                                               >  1:107006/1‑141 (MQ=255)                                                            gCTACAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGcgacagcttcgtcacc                                                                                                                             <  2:308186‑M1/95‑17 (MQ=255)                                                            gCTACAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGcgacagcttcgtcacc                                                                                                                             >  1:308186‑M1/1‑79 (MQ=255)                                                            gCTACAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AAAGTATAATAGTGAGCCAATGCACATaa                                                                              >  1:315002/1‑141 (MQ=255)                                                               aCAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AAAGTATAATAGTGAGCCAATGCACATaacaa                                                                           >  1:282849/1‑141 (MQ=255)                                                                        aaaaaGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AAAGTATAATAGTGAGCCAATGCACATAACAACAATAAAtt                                                                  <  1:111007/141‑1 (MQ=255)                                                                         aaaaGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTa                                                                 <  2:319319/141‑1 (MQ=255)                                                                           aaGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAg                                                               >  1:86375/1‑141 (MQ=255)                                                                            aGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGcgacagcttcgtcaccactttt                                                                                                                       <  2:99029‑M1/85‑23 (MQ=255)                                                                            aGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGcgacagcttcgtcaccactttt                                                                                                                       >  1:99029‑M1/1‑63 (MQ=255)                                                                              tatataTCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGttt                                                            >  1:304058/1‑141 (MQ=255)                                                                                  tatCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTgg                                                        >  2:21604/1‑141 (MQ=255)                                                                                    tCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTGGtt                                                      <  1:232716/141‑1 (MQ=255)                                                                                      tACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAGAGTGGTGACGAAGCTGTCGCCAGTTTTTTTGTGCTGAA‑AAAGTATAATAGTGAGCCAATGCACATAACAACAATAACTTCAGTTTGTGGTTTa                                                    <  2:112400/141‑1 (MQ=255)                                                                                       aCGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTGGTTTaa                                                   <  1:398556/141‑1 (MQ=255)                                                                                       aCGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTGGTTTaa                                                   <  1:358525/141‑1 (MQ=255)                                                                                               ttAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTGGTTTAATGGGGTGa                                           >  1:308450/1‑141 (MQ=255)                                                                                                tAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTTTTTATTT‑TTAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTGGTTTAATGGGGTGaa                                          >  2:431774/1‑141 (MQ=255)                                                                                                   aGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTGGTTTAATGGGGTGAACGc                                       <  1:219531/141‑1 (MQ=255)                                                                                                    gCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTGGTTTAATGGTGTGAACGCa                                      >  2:301633/1‑141 (MQ=255)                                                                                                     cAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTGGTTTAATGGGGTGAACGCAt                                     <  1:376468/141‑1 (MQ=255)                                                                                                      aaGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTGGTTTAATGGGGTGAACGCAtt                                    >  1:51006/1‑141 (MQ=255)                                                                                                      aaGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTGGTTTAATGGGGTGAACGCAtt                                    <  2:144331/141‑1 (MQ=255)                                                                                                        gggCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTGGTTTAATGGGGTGAACGCATTTc                                  >  2:225556/1‑141 (MQ=255)                                                                                                        gggCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTGGTTTAATGGGGTGAACGCATTTc                                  >  2:145881/1‑141 (MQ=255)                                                                                                         ggCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTGGTTTAATGGGGTGAACGCATTTCa                                 <  1:163976/141‑1 (MQ=255)                                                                                                             aGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTGGTTTAATGGGGTGAACGCATTTCATtat                             >  2:189869/1‑141 (MQ=255)                                                                                                             aGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTGGTTTAATGGGGTGAACGCATTTCATtat                             >  2:33531/1‑141 (MQ=255)                                                                                                              gATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTGGTTTAATGGGGTGAACGCATTTCATtata                            >  1:115782/1‑141 (MQ=255)                                                                                                                 aCTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTGGTTTAATGGGGTGAACGCATTTCATTATAGca                         <  2:102918/141‑1 (MQ=255)                                                                                                                  cTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTGGTTTAATGGGGTGAACGCATTTCATTATAGcaa                        >  1:170661/1‑141 (MQ=255)                                                                                                                    ttAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTGGTTTAATGGGGTGAACGCATTTCATTATAGcaaca                      <  1:245913/141‑1 (MQ=255)                                                                                                                        ataataTTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AAAGTATAATAGTTATCCAATGCACATAACAACAATAAATTAAGTTTGTGGTTTAATGGGGTGAACGCATTTCATTATAGCAACAATAc                  >  1:72962/1‑141 (MQ=255)                                                                                                                         acagcacaaaaaaaGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTGGTTTAATGGGGTGAACGCATTTCATTATAGCAACAATACg                 >  2:441005/10‑141 (MQ=255)                                                                                                                           ttcaacagaattgaggtgACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AAAGTATAATAGTGAGACAATGCACATAACAACAATAAATTAAGTATGCGGTTTCATGGGGTGAACGCATTTCATTATAGCCACCATCCggg               <  2:376966/127‑1 (MQ=255)                                                                                                                                  aaaaaGTTGTGATGAAGCTGTCGCCACTTTTTTTGTGATTTATATTGTA‑ACTAGAGAGCCAGTGCACACAACAACAATAAAAAAAGTGTGTGCTTTAATGGGGTTATCGCATTTCATTATATCAGTAATaaataaaaatta        >  2:66752/1‑130 (MQ=255)                                                                                                                                   aaaaGTGGTGACGAAGCTGTCGccactttttaaaatattatttaaagtatcttgcccttgctttaagtatacgtagatatatact                                                                <  2:99029‑M2/85‑64 (MQ=255)                                                                                                                                   aaaaGTGGTGACGAAGCTGTCGccactttttaaaatattatttaaagtatcttgcccttgctttaagtatacgtagatatatact                                                                >  1:99029‑M2/1‑22 (MQ=255)                                                                                                                                       gtggtgACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTGGTTTAATGGGGTGAACGCATTTCATTATAGCAACAATACGGGATAATTatgatg   >  1:351794/1‑141 (MQ=255)                                                                                                                                       gTGGcgacagcttcgtcaccacttgttaaaatattatgtaaagtatcttgcccttgctttaagtatacgtagatatatactttttaaagcttgtagctaaagcctttatttaactggttttgaaatttgtgttttaccacc    <  2:210981‑M1/141‑138 (MQ=255)                                                                                                                                         ggtgACGAAGCTGTCGccactttttaaaatattatttaaagtatcttgcccttgctttaagtatacgtagatatatactttttaaagcttgtagc                                                <  2:308186‑M2/95‑80 (MQ=255)                                                                                                                                         ggtgACGAAGCTGTCGccactttttaaaatattatttaaagtatcttgcccttgctttaagtatacgtagatatatactttttaaagcttgtagc                                                >  1:308186‑M2/1‑16 (MQ=255)                                                                                                                                         ggcgacagcttcgtcaccactttttaaaatattatttaaagtatcttgcccttgctttaagtatacgtagatatatactttttaaagcttgtagctaaagcctttatttaactggttttgaaatttgtgttttaccaccca  >  1:61861‑M1/1‑2 (MQ=255)                                                                                                                                         ggcgacagcttcgtcaccactttttaaaatattatttaaagtatcttgcccttgctttaagtatacgtagatatatactttttaaagcttgtagctaaagcctttatttaactggttttgaaatttgtgttttaccaccca  <  1:338800‑M1/141‑140 (MQ=255)                                                                                                                                          |                                                                                                                                            TTAGTACCATTTATGGGTGGTAAAACACAAATTTCAAAACCAGTTAAATAAAGGCTTTAGCTACAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTGGTTTAATGGGGTGAACGCATTTCATTATAGCAACAATACGGGATAATTATGATGA  >  CP000730/14049‑14324

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.