New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 14186	45 (1.080)	4 (0.100)	4/240	NT	8.5%	intergenic (+87/‑563)	serS/azlC	serine‑‑tRNA ligase/LIV‑E family branched chain amino acid exporter
	?	CP000730	= 14200	44 (1.140)					intergenic (+101/‑549)	serS/azlC	serine‑‑tRNA ligase/LIV‑E family branched chain amino acid exporter

TGGGTGGTAAAACACAAATTTCAAAACCAGTTAAATAAAGGCTTTAGCTACAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTGGTTTAATGGGGTGAACGCATTTCATTATAGCAACAATACGGGATAATTATGATGAACTAAAACAATCTA  >  CP000730/14062‑14338                                                                                                                                           |                                                                                                                                            tGGGTGGTAAAACACAAATTTCAAAACCAGTTAAATAAAGGCTTTAGCTACAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGcc                                                                                                                                           <  1:338800‑M2/141‑3 (MQ=255) tGGGTGGTAAAACACAAATTTCAAAACCAGTTAAATAAAGGCTTTAGCTACAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGcc                                                                                                                                           >  1:61861‑M2/1‑139 (MQ=255)   ggtggtAAAACACAAATTTCAAAACCAGTTAAATAAAGGCTTTAGCTACAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTACATAATATTTTAACAAGTGGTGACGAAGCTGTCGccac                                                                                                                                         <  2:210981‑M2/141‑5 (MQ=255)            acacAAATTTCAAAACCAGTTAAATAAAGGCTTTAGCTACAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTtgt                                                                                                                                <  2:255379/141‑1 (MQ=255)             cacaAATTTCAAAACCAGTTAAATAAAGGCTTTAGCTACAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTtgtg                                                                                                                               <  1:360570/141‑1 (MQ=255)                  aTTTCAAAACCAGTTAAATAAAGGCTTTAGCTACAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTTGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTa                                                                                                                          <  1:13378/141‑1 (MQ=255)                  aTTTCAAAACCAGTTAAATAAAGGCTTTAGCTACAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTa                                                                                                                          >  2:200323/1‑141 (MQ=255)                     tCAAAACCAGTTAAATAAAGGCTTTAGCTACAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTa‑aaa                                                                                                                      >  2:163976/1‑141 (MQ=255)                       aaaaCCAGTTAAATAAAGGCTTTAGCTACAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AAAGt                                                                                                                    >  1:388850/1‑141 (MQ=255)                       aaaaCCAGTTAAATAAAGGATTTAGCTACAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AAAGt                                                                                                                    >  1:322012/1‑141 (MQ=255)                         aaCCAGTTAAATAAAGGCTTTAGCTACAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AAAGtat                                                                                                                  <  1:146832/141‑1 (MQ=255)                             aGTTAAATAAAGGCTTTAGCTACAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AAAGTataata                                                                                                              >  1:12841/1‑141 (MQ=255)                               ttAAATAAAGGCTTTAGCTACAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AAAGTATAATAGt                                                                                                            <  1:247362/141‑1 (MQ=255)                                  aataaaGGCTTTAGCTACAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AAAGTATAATAGTGAg                                                                                                         <  2:129989/141‑1 (MQ=255)                                   ataaaGGCTTTAGCTACAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGCCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AACGTATAAAAGTGAGc                                                                                                        >  2:471264/1‑141 (MQ=255)                                         gCTTTAGCTACAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AAAGTATAATAGTGAGCCAATGc                                                                                                  <  1:74436/141‑1 (MQ=255)                                              aGCTACAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AAAGTATAATAGTGAGCCAATGCACATa                                                                                             >  1:107006/1‑141 (MQ=255)                                               gCTACAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AAAGTATAATAGTGAGCCAATGCACATaa                                                                                            >  1:315002/1‑141 (MQ=255)                                                  aCAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AAAGTATAATAGTGAGCCAATGCACATaacaa                                                                                         >  1:282849/1‑141 (MQ=255)                                                           aaaaaGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AAAGTATAATAGTGAGCCAATGCACATAACAACAATAAAtt                                                                                <  1:111007/141‑1 (MQ=255)                                                            aaaaGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTa                                                                               <  2:319319/141‑1 (MQ=255)                                                              aaGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAg                                                                             >  1:86375/1‑141 (MQ=255)                                                                 tatataTCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGttt                                                                          >  1:304058/1‑141 (MQ=255)                                                                     tatCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTgg                                                                      >  2:21604/1‑141 (MQ=255)                                                                       tCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTGGtt                                                                    <  1:232716/141‑1 (MQ=255)                                                                         tACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAGAGTGGTGACGAAGCTGTCGCCAGTTTTTTTGTGCTGAA‑AAAGTATAATAGTGAGCCAATGCACATAACAACAATAACTTCAGTTTGTGGTTTa                                                                  <  2:112400/141‑1 (MQ=255)                                                                          aCGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTGGTTTaa                                                                 <  1:398556/141‑1 (MQ=255)                                                                          aCGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTGGTTTaa                                                                 <  1:358525/141‑1 (MQ=255)                                                                                  ttAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTGGTTTAATGGGGTGa                                                         >  1:308450/1‑141 (MQ=255)                                                                                   tAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTTTTTATTT‑TTAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTGGTTTAATGGGGTGaa                                                        >  2:431774/1‑141 (MQ=255)                                                                                      aGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTGGTTTAATGGGGTGAACGc                                                     <  1:219531/141‑1 (MQ=255)                                                                                       gCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTGGTTTAATGGTGTGAACGCa                                                    >  2:301633/1‑141 (MQ=255)                                                                                        cAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTGGTTTAATGGGGTGAACGCAt                                                   <  1:376468/141‑1 (MQ=255)                                                                                         aaGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTGGTTTAATGGGGTGAACGCAtt                                                  >  1:51006/1‑141 (MQ=255)                                                                                         aaGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTGGTTTAATGGGGTGAACGCAtt                                                  <  2:144331/141‑1 (MQ=255)                                                                                           gggCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTGGTTTAATGGGGTGAACGCATTTc                                                >  2:145881/1‑141 (MQ=255)                                                                                           gggCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTGGTTTAATGGGGTGAACGCATTTc                                                >  2:225556/1‑141 (MQ=255)                                                                                            ggCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTGGTTTAATGGGGTGAACGCATTTCa                                               <  1:163976/141‑1 (MQ=255)                                                                                                aGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTGGTTTAATGGGGTGAACGCATTTCATtat                                           >  2:33531/1‑141 (MQ=255)                                                                                                aGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTGGTTTAATGGGGTGAACGCATTTCATtat                                           >  2:189869/1‑141 (MQ=255)                                                                                                 gATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTGGTTTAATGGGGTGAACGCATTTCATtata                                          >  1:115782/1‑141 (MQ=255)                                                                                                    aCTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTGGTTTAATGGGGTGAACGCATTTCATTATAGca                                       <  2:102918/141‑1 (MQ=255)                                                                                                     cTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTGGTTTAATGGGGTGAACGCATTTCATTATAGcaa                                      >  1:170661/1‑141 (MQ=255)                                                                                                       ttAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTGGTTTAATGGGGTGAACGCATTTCATTATAGcaaca                                    <  1:245913/141‑1 (MQ=255)                                                                                                           ataataTTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AAAGTATAATAGTTATCCAATGCACATAACAACAATAAATTAAGTTTGTGGTTTAATGGGGTGAACGCATTTCATTATAGCAACAATAc                                >  1:72962/1‑141 (MQ=255)                                                                                                            acagcacaaaaaaaGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTGGTTTAATGGGGTGAACGCATTTCATTATAGCAACAATACg                               >  2:441005/10‑141 (MQ=255)                                                                                                              ttcaacagaattgaggtgACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AAAGTATAATAGTGAGACAATGCACATAACAACAATAAATTAAGTATGCGGTTTCATGGGGTGAACGCATTTCATTATAGCCACCATCCggg                             <  2:376966/127‑1 (MQ=255)                                                                                                                     aaaaaGTTGTGATGAAGCTGTCGCCACTTTTTTTGTGATTTATATTGTA‑ACTAGAGAGCCAGTGCACACAACAACAATAAAAAAAGTGTGTGCTTTAATGGGGTTATCGCATTTCATTATATCAGTAATaaataaaaatta                      >  2:66752/1‑130 (MQ=255)                                                                                                                      aaaaGTGGTGACGAAGCTGTCGccactttttaaaatattatttaaagtatcttgcccttgctttaagtatacgtagatatatact                                                                              <  2:99029‑M2/85‑64 (MQ=255)                                                                                                                      aaaaGTGGTGACGAAGCTGTCGccactttttaaaatattatttaaagtatcttgcccttgctttaagtatacgtagatatatact                                                                              >  1:99029‑M2/1‑22 (MQ=255)                                                                                                                          gtggtgACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTGGTTTAATGGGGTGAACGCATTTCATTATAGCAACAATACGGGATAATTatgatg                 >  1:351794/1‑141 (MQ=255)                                                                                                                            ggtgACGAAGCTGTCGccactttttaaaatattatttaaagtatcttgcccttgctttaagtatacgtagatatatactttttaaagcttgtagc                                                              >  1:308186‑M2/1‑16 (MQ=255)                                                                                                                            ggtgACGAAGCTGTCGccactttttaaaatattatttaaagtatcttgcccttgctttaagtatacgtagatatatactttttaaagcttgtagc                                                              <  2:308186‑M2/95‑80 (MQ=255)                                                                                                                                         tCGCCACTTTTTTTGTGCTGTA‑AAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTGGTTTAATGGGGTGAACGCATTTCATTATAGCAACAATACGGGATAATTATGATGAACTAAAACAATcca  <  2:278144/141‑3 (MQ=255)                                                                                                                                           |                                                                                                                                            TGGGTGGTAAAACACAAATTTCAAAACCAGTTAAATAAAGGCTTTAGCTACAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGTGACGAAGCTGTCGCCACTTTTTTTGTGCTGTA‑AAAGTATAATAGTGAGCCAATGCACATAACAACAATAAATTAAGTTTGTGGTTTAATGGGGTGAACGCATTTCATTATAGCAACAATACGGGATAATTATGATGAACTAAAACAATCTA  >  CP000730/14062‑14338

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.