New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 2306157	48 (1.230)	4 (0.120)	4/244	4.9	9.1%	coding (78/108 nt)	USA300HOU_2165	hypothetical protein
	?	CP000730	= 2306167	38 (1.110)					coding (68/108 nt)	USA300HOU_2165	hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AGACAGCAAAGATGTATCTAGAATCGGCTCAACGTTTGGTAAAACGAATCGCGTTATTATCGATACTGAAGACCACGAATACATTATTTATACTCAAAATGATCAAAAAGTTTACAATGAATTAACTAAATAAATTGTATAAAAAAATCATTCATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/2306002‑2306157 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taaaaaaatcattcatgAAGCCCTCACCATGAATGA‑TTTTTTTATACAATTTATTTAGTTAATTCATTGTAAACTTTTTGATCATTTTGAGTATAAATAATGTATTCGTGGTCTTCAGTATCGATAATAACGCGATTCGTTTTACCAAACGTTGAGC  <  CP000730/2306167‑2306028                                                                                                                                                                                                                                                                                                           AGACAGCAAAGATGTATCTAGAATCGGCTCAACGTTTGGTAAAACGAATCGCGTTATTATCGATACTGAAGACCACGAATACATTATTTATACTCAAAATGATCAAAAAGTTTACAATGAATTAACTAAATAAATTGTATA                                                                                                                                                              >  2:243121/1‑141  GACAGCAAAGATGTATCTAGAATCGGCTCAACGTTTGGTAAAACGAATCGCGTTATTATCGATACTGAAGACCACGAATACATTATTTATACTCAAAATGATCAAAAAGTTTACAATGAATTAACTAAATAAATTGTATAA                                                                                                                                                             >  2:196622/1‑141     AGCAAAGATGTATCTAGAATCGGCTCAACGTTTGGTAAAACGAATCGCGTTATTATCGATACTGAAGACCACGAATACATTATTTATACTCAAAATGATCAAAAAGTTTACAATGAATTAACTAAATAAATTGTATAAAAA                                                                                                                                                          >  2:194460/1‑141          AGATGTATCTAGAATCGGCTCAACGTTTGGTAAAACGAATCGCGTTATTATCGATACTGAAGACCACGAATACATTATTTATACTCAAAATGATCAAAAAGTTTACAATGAATTAACTAAATAAATTGTATAAAAAAATCA                                                                                                                                                     <  1:243121/141‑1                                ACGTTTGGTAAAACGAATCGCGTTATTATCGATACTGAAGACCACGAATACATTATTTATACTCAAAATGATCAAAAAGTTTACAATGAATTAACTAAATAAATTGTATAAAAAAATCATTCATGAAGCCCTCACCATGAA                                                                                                                               <  1:425062/141‑1                                   TTTGGTAAAACGAATCGCGTTATTATCGATACTGAAGACCACGAATACATTATTTATACTCAAAATGATCAAAAAGTTTACAATGAATTAACTAAATAAATTGTATAAAAAAATCATTCATGAAGCCCTCACCATGAATGA                                                                                                                            <  1:22214/141‑1                                                                                      ATTTATACTCAAAATGATCAAAAAGTTTACAATGAATTAACTAAATAAATTGTATAAAAAAATCATTCATGAAGCCCTCACCATGAATGA‑T                                                                                                                          >  1:207715/1‑91                                                                                      ATTTATACTCAAAATGATCAAAAAGTTTACAATGAATTAACTAAATAAATTGTATAAAAAAATCATTCATGAAGCCCTCACCATGAATGA‑T                                                                                                                          <  2:207715/91‑1                                                                                                                                                AAAATCATTCATGAAGCCCTCACCATGAATGA‑TTTTTTTATACAATTTATTTAGTTAATTCATTGTAAACTTTTTGATCATTTTGAGTATAAATAATGTATTCGTGGTCTTCAGTATCGATAATAACGCGAATCGTTTTAC              >  2:358583/1‑141                                                                                                                                                 AAATCATTCATGAAGCCCTCACCATGAATGATTTTTTTTATACAATTTATTTAGTTAATTCATTGTAAACTTTTTGATCATTTTGAGTATAAATAATGTATTCGTGGTCTTCAGTATCGATAATAACGCGATTCGTTTTAC              <  1:438305/141‑1                                                                                                                                                  AATCATTCATGAAGCCCTCACCATGAATGA‑TTTTTTTATACAATTTATTTAGTTAATTCATTGTAAACTTTTTGATCATTTTGAGTATAAATAATGTATTCGTGGTCTTCAGTATCGATAATAACGCGATTCGTTTTACCA            >  2:61673/1‑141                                                                                                                                                    TCATTCATGAAGCCCTCACCATGAATGA‑TTTTTTTATACAATTTATTTAGTTAATTCATTGTAAACTTTTTGATCATTTTGAGTATAAATAATGTATTCGTGGTCTTCAGTATCGATAATAACGCGATTCGTTTTACCAAA          >  1:264803/1‑141                                                                                                                                                       TTCATGAAGCCCTCACCATGAATGA‑TTTTTTTATACAATTTATTTAGTTAATTCATTGTAAACTTTTTGATCATTTTGAGTATAAATAATGTATTCGTGGTCTTCAGTATCGATAATAACGCGATTCGTTTTACCAAACGT       <  1:63891/141‑1                                                                                                                                                        TCATGAAGCCCTCACCATGAATGA‑TTTTTTTATACAATTTATTTAGTTAATTCATTGTAAACTTTTTGATCATTTTGAGTATAAATAATGTATTCGTGGTCTTCAGTATCGATAATAACGCGATTCGTTTTACCAAACGTT      <  1:353681/141‑1                                                                                                                                                         CATGAAGCCCTCACCATGAATGA‑TTTTTTTATACAATTTATTTAGTTAATTCATTGTAAACTTTTTGATCATTTTGAGTATAAATAATGTATTCGTGGTCTTCAGTATCGATAATAACGCGATTCGTTTTACCAAACGTTG     >  2:357796/1‑141                                                                                                                                                          ATGAAGCCCTCACCATGAATGA‑TTTTTTTATACAATTTATTTAGTTAATTCATTGTAAACTTTTTGATCATTTTGAGTATAAATAATGTATTCGTGGTCTTCAGTATCGATAATAACGCGATTCGTTTTACCAAACGTTGA    <  1:44487/141‑1                                                                                                                                                            GAAGCCCTCACCATGAATGA‑TTTTTTTATACAATTTATTTAGTTAATTCATTGTAAACTTTTTGATCATTTTGAGTATAAATAATGTATTCGTGGTCTTCAGTATCGATAATAACGCGATTCGTTTTACCAAACGTTGAGC  <  1:299395/141‑1                                                                                                                                                                                                                                                                                                           AGACAGCAAAGATGTATCTAGAATCGGCTCAACGTTTGGTAAAACGAATCGCGTTATTATCGATACTGAAGACCACGAATACATTATTTATACTCAAAATGATCAAAAAGTTTACAATGAATTAACTAAATAAATTGTATAAAAAAATCATTCATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/2306002‑2306157 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taaaaaaatcattcatgAAGCCCTCACCATGAATGA‑TTTTTTTATACAATTTATTTAGTTAATTCATTGTAAACTTTTTGATCATTTTGAGTATAAATAATGTATTCGTGGTCTTCAGTATCGATAATAACGCGATTCGTTTTACCAAACGTTGAGC  <  CP000730/2306167‑2306028

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.