New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	1131036 =	29 (1.050)	3 (0.130)	3/224	NT	12.2%	coding (435/435 nt)	ylbF	hypothetical protein
	?	CP000730	1131101 =	18 (0.750)					intergenic (+65/‑1163)	ylbF/USA300HOU_1059	hypothetical protein/hypothetical protein

AGAAACAGGTAATCCATTCTTTCAAACATCACATAGTGGTTGTGCGACGGGCGGATCCTGTAATTGTTCATTATAAAAAACATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATG‑TTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAATCATTCATCAGATTTATACTATTTACGCCATAATAGCCTGGAATGATATTCATATC  >  CP000730/1130961‑1131239                                                                                                                                              |                                                                                                                                           aGAAACAGGTAATCCATTCTTTCAAACATCACATAGTGGTTGTGCGACGGGCGGATCCTGTAATTGTTCATTATAAAAAACATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATG‑TTttta                                                                                                                                            >  2:32671/1‑141 (MQ=255)        ggTAATCCATTCTTTCAAACATCACATAGTGGTTGTGCGACGGGCGGATCCTGTAATTGTTCATTATAAAAAACATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATG‑TTTTTATTTATTc                                                                                                                                     >  1:230362/1‑141 (MQ=255)           aaTCCATTCTTTCAAACATCACATAGTGGTTGTGCGACGGGCGGATCCTGTAATTGTTCATTATAAAAAACATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATG‑TTTTTATTTATTCggg                                                                                                                                  <  1:215971/141‑1 (MQ=255)                 ttCTTTCAAACATCACATAGTGGTTGTGCGACGGGCGGATCCTGTAATTGTTCATTATAAAAAACATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATG‑TTTTTATTTATTCGGGAttgtt                                                                                                                            <  2:152781/141‑1 (MQ=255)                 ttCTTTCAAACATCACATAGTGGTTGTGCGACGGGCGGATCCTGTAATTGTTCATTATAAAAAACATCGAGTCAGAAAAAGGTGGTTATTGAAACAACTAACTAGCATCTGACTAGATG‑TTTTTATTTATTCGGGAttgtt                                                                                                                            >  2:255420/1‑141 (MQ=255)                   cTTTCAAACATCAAATAGTGGTTGTGCGACGGGCGGATCCTGTAATTGTTCATTATAAAAAACATAGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATG‑TTTTTATTTATTCGGGAttgtttg                                                                                                                          <  2:164642/141‑1 (MQ=255)                       cAAACATCACATAGTGGTTGTGCGACGGGCGGATCCTGTAATTGTTCATTATAAAAAAAATAGAGACAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATG‑TTTTTATTTATTCGGGATTGtttgtttg                                                                                                                      <  2:118418/141‑1 (MQ=255)                             tCACATAGTGGTTGTGCGACGGGCGGATCCTGTAATTGTTCATTATAAAAAACATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATG‑TTTTTATTTATTCGGGATTGTTTGTTTGAAttgt                                                                                                                <  1:68007/141‑1 (MQ=255)                             tCACATAGTGGTTGTGCGACGGGCGGATCCTGTAATTGTTCATTATAAAAAACATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATG‑TTTTTATTTATTCGGGATTGTTTGTTTGAAttgt                                                                                                                >  2:19436/1‑141 (MQ=255)                              cacaTAGTGGTTGTGCGACGGGCGGATCCTGTAATTGTTCATTATAAAAAACATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATG‑TTTTTATTTATTCGGGATTGTTTGTTTGAAttgtt                                                                                                               <  1:243589/141‑1 (MQ=255)                              cacaTAGTGGTTGTGCGACGGGCGGATCCTGTAATTGTTCATTATAAAAAACATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATG‑TTTTTATTTATTCGGGATTGTTTGTTTGAAttgtt                                                                                                               >  2:189240/1‑141 (MQ=255)                                 aTAGTGGTTGTGCGACGGGCGGATCCTGTAATTGTTCATTATAAAAAACATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATGTTTTTTATTTATTCGGGATTGTTTGTTTGAATtgttgt                                                                                                             >  2:272095/1‑141 (MQ=255)                                  tAGTGGTTCACCGACGGGCAGATCCTATGACTGTTCACTATAAAAAACAAAGAGAAAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATG‑TTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGc                                                                                                           <  2:219164/141‑1 (MQ=255)                                                    cGGATCCTGTAATTGTTCATTATAAAAAACATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATG‑TTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGt                                                                                         <  1:298003/141‑1 (MQ=255)                                                    cGGATCCTGTAATTGTTCATTATAAAAAACATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATG‑TTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGt                                                                                         <  2:119382/141‑1 (MQ=255)                                                                    tCATTATAAAAAACATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATG‑TTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCa                                                                         <  1:188486/141‑1 (MQ=255)                                                                    tCATTATAAAAAACATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATG‑TTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCa                                                                         >  2:110777/1‑141 (MQ=255)                                                                     cATTATAAAAAACATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATG‑TTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGctc                                                                        >  2:31426/1‑139 (MQ=255)                                                                            AAAAACATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATG‑TTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGc                                                                          <  2:253092‑M1/132‑1 (MQ=255)                                                                            AAAAACATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATG‑TTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGc                                                                          >  1:253092‑M1/1‑132 (MQ=255)                                                                            AAAAACATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATG‑TTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTg                                                                 <  1:138407‑M1/141‑1 (MQ=255)                                                                                  ATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGGATCTGACTCGATG‑TTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATaa                                                           >  2:323740‑M1/1‑141 (MQ=255)                                                                                   atcgagtcagatgctagttagtggtttcaataaccacctttttctgactcgatgtttttATTTATTCGGGATTGTTTGTTTGACTTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATaa                                                           >  1:117998‑M2/60‑141 (MQ=255)                                                                                      AGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATG‑TTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAAtca                                                       <  2:6013‑M1/141‑1 (MQ=255)                                                                                       GTCAGAAAAAGGTGGTTGTTGCAACCACTAACTAGCATCTGACTCGATG‑TTTTTATTTATTCGGGATTGTTTGTTTGGATTGTTGTGCGAAATCTGGTCGATCTTTCACAATCGTGTGTGCACCTTTTTGGTATaaattat                                                      <  2:230799‑M1/141‑4 (MQ=255)                                                                                             atgctagttagtggtttcaataaccacctttttctgactcgatgtttttATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAATCATtcatc                                                 >  2:256869‑M2/50‑141 (MQ=255)                                                                                             aaaaGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATG‑TTTTTTTTTTTTTTTGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTTGTATAAATCATtcatca                                                >  2:330891/1‑141 (MQ=255)                                                                                                 tagttagtggtttcaataaccacctttttctgactcgatgtttttATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAATCATTCATCAGAt                                             <  1:256869‑M2/96‑1 (MQ=255)                                                                                                                                         tttttATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAATCATTCATCAGATTTATACTATTTACGCCATAATAGCCTGGAATGATATTCat     <  1:205544‑M2/136‑1 (MQ=255)                                                                                                                                         tttttATTTATTCGGGATTGTATGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAATCATTCATCAGATTTATACTATTTACGCCATAATAGCCTGGaatgatatgaat     <  1:152826‑M2/136‑5 (MQ=255)                                                                                                                                           tttATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAATCATTCATCAGATTTATACTATTTACGCCATAATAGCCTGGAATGATATGAatat   <  2:129424‑M2/138‑1 (MQ=255)                                                                                                                                            ttATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAATCATTCATCAGATTTATACTATTTACGCCATAATAGCCTGGAATGATATTCATATc  >  1:83729‑M2/3‑141 (MQ=255)                                                                                                                                              |                                                                                                                                           AGAAACAGGTAATCCATTCTTTCAAACATCACATAGTGGTTGTGCGACGGGCGGATCCTGTAATTGTTCATTATAAAAAACATCGAGTCAGAAAAAGGTGGTTATTGAAACCACTAACTAGCATCTGACTCGATG‑TTTTTATTTATTCGGGATTGTTTGTTTGAATTGTTGTGCTAAATCTGGTCGATCTGTCACAATCGTGTGTGCACCTTTTTGGTATAAATCATTCATCAGATTTATACTATTTACGCCATAATAGCCTGGAATGATATTCATATC  >  CP000730/1130961‑1131239

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.