BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3659552 =	249 (2.430)	3 (0.030)	3/290	10.6	1.3%	coding (321/1158 nt)	mdtE	anaerobic multidrug efflux transporter, ArcA‑regulated
*	?	NC_000913	3659580 =	229 (2.350)	3 (0.030)	3/290	10.6	1.3%	coding (349/1158 nt)	mdtE	anaerobic multidrug efflux transporter, ArcA‑regulated
Rejected: Position hash score below cutoff.

Only 100 of 250 total aligned reads displayed.

CTCCCCCGGTTCGGTCAATGTGTTGAGCGAATTGCCCGGTAGAACCGTTCCTTATGAAGTTGCCGAGATACGTCCCCAGGTGGGCGGTATTATCATTAAACGCAACTTTATCGAAGGCGATAAAGTGAACCAGGGCGATTCGCTGTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGCCAGGCATCGTTGCTGAAGACCAACTACGTTAGCCGTCAGGATTACGACACCGCGCGCACCCAGTTGAATGAAGCAGAAGCCAATGTCACCGTCGCCAAAGCGGCTGTTGAACAGGCGACGATCAATCTGCAATACGCGAATGTCACC  >  NC_000913/3659354‑3659750

  cccccGGTTCGGTCAATGTGTTGAGCGAATTGCCCGGTAGAACCGTTCCTTATGAAGTTGCCGAGATACGTCCCCAGGTGGGCGGTATTATCATTAAACGCAACTTTATCGAAGGCGATAAAGTGAACCAGGGCGATTCGCTGTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCC‑AAAGTCTCGCTg                                                                                                                                                                                                     >  2:282817/1‑200 (MQ=255)

                       tGAGCGAATTGCCCGGTAGAACCGTTCCTTATGAAGTTGCCGAGATACGTCCCCAGGTGGGCGGTATTATCATTAAACGCAACTTTATCGAAGGCGATAAAGTGAACCAGGGCGATTCGCTGTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGcc                                                                                                                                                                                <  2:585919/200‑1 (MQ=255)

                         aGCGAATTGCCCGGTAGAACCGTTCCTTATGAAGTTGCCGAGATACGTCCCCAGGTGGGCGGTATTATCATTAAACGCAACTTTATCGAAGGCGATAAAGTGAACCAGGGCGATTCGCTGTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAg                                                                                                                                                                              <  2:54006/200‑1 (MQ=255)

                            gAATTGCCCGGTAGAACCGTTCCTTATGAAGTTGCCGAGATACGTCCCCAGGTGGGCGGTATTATCATTAAACGCAACTTTATCGAAGGCGATAAAGTGAACCAGGGCGATTCGCTGTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCaa                                                                                                                                                                           >  2:758967/1‑200 (MQ=255)

                                      gTAGAACCGTTCCTTATGAAGTTGCCGAGATACGTCCCCAGGTGGGCGGTATTATCATTAAACGCAACTTTATCGAAGGCGATAAAGTGAACCAGGGCGATTCGCTGTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATc                                                                                                                                                                 >  2:317415/1‑200 (MQ=255)

                                      gTAGAACCGTTCCTTATGAAGTTGCCGAGATACGTCCCCAGGTGGGCGGTATTATCATTAAACGCAACTTTATCGAAGGCGATAAAGTGAACCAGGGCGATTCGCTGTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATc                                                                                                                                                                 >  2:691959/1‑200 (MQ=255)

                                      gTAGAACCGTTCCTTATGAAGTTGCCGAGATACGTCCCCAGGTGGGCGGTATTATCATTAAACGCAACTTTATCGAAGGCGATAAAGTGAACCAGGGCGATTCGCTGTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATc                                                                                                                                                                 >  2:731582/1‑200 (MQ=255)

                                               ttCCTTATGAAGTTGCCGAGATACGTCCCCAGGTGGGCGGTATTATCATTAAACGCAACTTTATCGAAGGCGATAAAGTGAACCAGGGCGATTCGCTGTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAAc                                                                                                                                                        <  2:448979/200‑1 (MQ=255)

                                               ttCCTTATGAAGTTGCCGAGATACGTCCCCAGGTGGGCGGTATTATCATTAAACGCAACTTTATCGAAGGCGATAAAGTGAACCAGGGCGATTCGCTGTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAAc                                                                                                                                                        <  2:63562/200‑1 (MQ=255)

                                                tCCTTATGAAGTTGCCGAGATACGTCCCCAGGTGGGCGGTATTATCATTAAACGCAACTTTATCGAAGGCGATAAAGTGAACCAGGGCGATTCGCTGTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAAcc                                                                                                                                                       <  2:15651/200‑1 (MQ=255)

                                                tCCTTATGAAGTTGCCGAGATACGTCCCCAGGTGGGCGGTATTATCATTAAACGCAACTTTATCGAAGGCGATAAAGTGAACCAGGGCGATTCGCTGTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAAcc                                                                                                                                                       <  2:781922/200‑1 (MQ=255)

                                                  cTTATGAAGTTGCCGAGATACGTCCCCAGGTGGGTGGTATTATCATTAAACGCAACTTTATCGAAGTCGATAAAGTGAAACAGGGCGATTCGCTGTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTACGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGc                                                                                                                                                     >  2:214259/1‑200 (MQ=255)

                                                  cTTATGAAGTTGCCGAGATACGTCCCCAGGTGGGCGGTATTATCATTAAACGCAACTTTATCGAAGGCGATAAAGTGAACCAGGGCGATTCGCTGTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCC‑AAAGGCTCGc                                                                                                                                                                                                       >  1:782574/1‑150 (MQ=255)

                                                                       gTCCCCAGGTGGGCGGTATTATCATTAAACGCAACTTTATCGAAGGCGATAAAGTGAACCAGGGCGATTCGCTGTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCg                                                                                                                                                                                  >  1:606390/1‑150 (MQ=255)

                                                                       gTCCCCAGGTGGGCGGTATTATCATTAAACGCAACTTTATCGAAGGCGATAAAGTGAACCAGGGCGATTCGCTGTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCg                                                                                                                                                                                  >  1:176291/1‑150 (MQ=255)

                                                                       gTCCCCAGGTGGGCGGTATTATCATTAAACGCAACTTTATCGAAGGCGATAAAGTGAACCAGGGCGATTCGCTGTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGCCAGGCATCGTTGCTGAAGAcc                                                                                                                                >  2:738824/1‑200 (MQ=255)

                                                                       gTCCCCAGGTGGGCGGTATTATCATTAAACGCAACTTTATCGAAGGCGATAAAGTGAACCAGGGCGATTCGCTGTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGCCAGGCATCGTTGCTGAAGAcc                                                                                                                                >  2:344069/1‑200 (MQ=255)

                                                                       gTCCCCAGGTGGGCGGTATTATCATTAAACGCAACTTTATCGAAGGCGATAAAGTGAACCAGGGCGATTCGCTGTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGCCAGGCATCGTTGCTGAAGAcc                                                                                                                                >  2:17155/1‑200 (MQ=255)

                                                                       gTCCCCAGGTGGGCGGTATTATCATTAAACGCAACTTTATCGAAGGCGATAAAGTGAACCAGGGCGATTCGCTGTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGCCAGGCATCGTTGCTGAAGAcc                                                                                                                                >  2:489073/1‑200 (MQ=255)

                                                                       ctCCCCAGGTGGGCGGTATTATCATTAAACGCAACTTTATCGAAGGCGATAAAGTGCACCAGGGCGATTCGCTGTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTACACTCCGCC‑ACAGGCTCGCTgg                                                                                                                                                                                                    >  4:479010/2‑132 (MQ=255)

                                                                        tgcacAGGTGGGCGGTATTAGCTATTAACGCTACGTTATGCAATGCGATAAAGTGAACCAGGGCGATTCGCTGTATCAGATTGTTCCTGCACCTTTCCAGGCCGAGCTAAATTCCGCC‑AACGGCTCGCTGGCGAAAGTGCTCCCTACCGc                                                                                                                                                                                 <  1:629554/146‑1 (MQ=255)

                                                                         tctcaggctggCGGTATTATCACTAAACGCAACTTTATCGAAGGCGATAAAGTGAACCAGGGCGATTCGCTGCATCAGATTGATCCTGCACCTTTACAGTCCGAGCTAAACCCTGCC‑AAAGGATCGCTggtg                                                                                                                                                                                                  >  4:401915/10‑130 (MQ=255)

                                                                         ccccAGGTGGGCGGTATTATCATTAAACGCAACTTTATCGAAGGCGATAAAGTGAACCTGGGCGATTAGCTGTATCAGATTGATCCTGCACCTTTACAGGCCGACCTAAAATCCGCC‑AAACGCTCGCTGGCCAATGCGCCCCCTAccaac                                                                                                                                                                                >  1:490928/1‑147 (MQ=255)

                                                                         ccccAGGTGGGCGGTATTATCATTAAACGCAACTTTATCGAAGGCGATAAAGTGAACCAGGGCGATTCGCTGTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGCCAGGCATCGTTGCTGAAGACCaa                                                                                                                              >  2:371131/1‑200 (MQ=255)

                                                                                 gggCGGTATTATCATTAAACGCAACTTTATCGAAGGCGATAAAGTGAACCAGGGCGATTCGCTGTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGc                                                                                                                                                                                 <  3:59894/141‑1 (MQ=255)

                                                                                 gggCGGTATTATCATTAAACGCAACTTTATCGAAGGCGATAAAGTGAACCAGGGCGATTCGCTGTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGCCAGGCATCGTTGCTGAAGACCAACTACGTTa                                                                                                                      >  2:721068/1‑200 (MQ=255)

                                                                                      gTATTATCATTAAACGCAACTTTATCGAAGGCGATAAAGTGAACCAGGGCGATTCGCTGTATCAGATTGATCCTGCACCTTTACAGGCCGCGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAACGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGCCAGGCATCGTTGCTGAAGACCAACTACGTTAGCCGt                                                                                                                 >  2:88969/1‑200 (MQ=255)

                                                                                      gTATTATCATTAAACGCAACTTTATCGAAGGCGATAAAGTGAACCAGGGCGATTCGCTGTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAATCGCTCTCTa                                                                                                                                                                                     >  4:49203/1‑132 (MQ=255)

                                                                                      gTATTATCATTAAACGCAACTTTATCGAAGGCGATAAAGTGAACCAGGGCGATTCGCTGTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTa                                                                                                                                                                                     >  4:320812/1‑132 (MQ=255)

                                                                                      gTATTATCATTAAACGCAACTTTATCGAAGGCGATAAAGTGAACCAGGGCGATTCGCTGTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTa                                                                                                                                                                                     >  4:287824/1‑132 (MQ=255)

                                                                                      gTATTATCATTAAACGCAACTTTATCGAAGGCGATAAAGTGAACCAGGGCGATTCGCTGTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCa                                                                                                                                                                            >  3:259653/1‑141 (MQ=255)

                                                                                      gTATTATCATTAAACGCAACTTTATCGAAGGCGATAAAGTGAACCAGGGCGATTCGCTGTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCa                                                                                                                                                                   >  1:111046/1‑150 (MQ=255)

                                                                                      gTATTATCATTAAACGCAACTTTATCGAAGGCGATAAAGTGAACCAGGGCGATTCGCTGTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGCCAGGCATCGTTGCTGAAGAc                                                                                                                                 <  2:769611/184‑1 (MQ=255)

                                                                                      gTATTATCATTAAACGCAACTTTATCGAAGGCGATAAAGTGAACCAGGGCGATTCGCTGTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGCCAGGCATCGTTGCTGAAGACCAACTACGTTAGCCGt                                                                                                                 >  2:146855/1‑200 (MQ=255)

                                                                                      gTATTATCATTAAACGCAACTTTATCGAAGGCGATAAAGTGAACCAGGGCGATTCGCTGTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCC‑AAAGGCTAGCTGGCGAAAGCGCTCTCTa                                                                                                                                                                                     >  4:262004/1‑132 (MQ=255)

                                                                                          tatCATTAAACGCAACTTTATCGAAGGCGATAAAGTGAACCAGGGCGATTCGCTGTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGc                                                                                                                                                                                 <  4:132395/132‑1 (MQ=255)

                                                                                                 aaaCGCAACTTTATCGAAGGCGATAAAGTGAACCAGGGCGATTCGCTGTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAAc                                                                                                                                                        <  1:220215/150‑1 (MQ=255)

                                                                                                  aaCGCAACTTTATCGAAGGCGATAAAGTGAACCAGGGCGATTCGCTGTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATcc                                                                                                                                                                <  3:287832/141‑2 (MQ=255)

                                                                                                    cGCAACTTTATCGAAGGCGATAAAGTGAACCAGGGCGATTCGCTGTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGcc                                                                                                                                                                       <  4:594260/132‑1 (MQ=255)

                                                                                                    cGCAACTTTATCGAAGGCGATAAAGTGAACCAGGGCGATTCGCTGTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGCCAGGCATCGTTGCTGAAGACCAACTACGTTAGCCGTCAGGATTACGacac                                                                                                   <  2:420241/200‑1 (MQ=255)

                                                                                                     gCAACTTTATCGAAGGCGATAAAGTGAACCAGGGCGATTCGCTGTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGccc                                                                                                                                                                      <  4:738329/132‑1 (MQ=255)

                                                                                                      cAACTTTATCGAAGGCGATAAAGTGAACCAGGGCGATTCGCTGTATCAGATTGATCCTGCACCTTTACAGGCTGAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTCACCGTCAGGCATCGTTGCTGAATACCAACTACGTTAGCCGACAGGATTACGACACcg                                                                                                 >  2:11954/1‑200 (MQ=255)

                                                                                                        aCTTTATCGAAGGCGATAAAGTGAACCAGGGCGATTCGCTGTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCa                                                                                                                                                                   >  4:5624/1‑132 (MQ=255)

                                                                                                        aCTTTATCGAAGGCGATAAAGTGAACCAGGGCGATTCGCTGTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTa                                                                                                                                                          >  3:514093/1‑141 (MQ=255)

                                                                                                        aCTTTATCGAAGGCGATAAAGTGAACCAGGGCGATTCGCTGTAACAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCAAGCAATGCCCGCATCACCTTTa                                                                                                                                                          >  3:511420/1‑141 (MQ=255)

                                                                                                             aTCGAAGGCGATAAAGTGAACCAGGGCGATTCGCTGTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGc                                                                                                                                                     >  3:729971/1‑141 (MQ=255)

                                                                                                                   ggCGATAAAGTGAACCAGGGCGATTCGCTGTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAAc                                                                                                                                                        <  4:20181/132‑1 (MQ=255)

                                                                                                                   ggCGATAAAGTGAACCAGGGCGATTCGCTGTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAAc                                                                                                                                                        <  4:410959/132‑1 (MQ=255)

                                                                                                                    gCGATAAAGTGAACCAGGGCGATTCGCTGTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAAcc                                                                                                                                                       >  4:43129/1‑132 (MQ=255)

                                                                                                                    gCGATAAAGTGAACCAGGGCGATTCGCTGTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGCCAGGCATCGTTGCTGAAGACCAACTACGTTAGCCGTCAGGATTACGACACCGCGCGCACCCAGTtg                                                                                   >  2:733016/1‑200 (MQ=255)

                                                                                                                      gATAAAGTGAACCTGGTCGATTCGCTGTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGCCAGGCATCGTTGCTGAAg                                                                                                                                   <  1:803205/150‑1 (MQ=255)

                                                                                                                       aTAAAGTGAACCAGGGCGATTCGCTGTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGCCAGGCATCGTTGCTGAAGACCAACTACGTTAGCCGTCAGGATTACGACACCGCGCGCACCCAGTtgaat                                                                                <  2:176304/200‑1 (MQ=255)

                                                                                                                        tAAAGTGAACCAGGGCGATTCGCTGTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGCCAGGCATCGtt                                                                                                                                          <  3:638872/141‑1 (MQ=255)

                                                                                                                         aaaGTGAACCAGGGCGATTCGCTGTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGCCAGGCATCGTTGCTGAAGCcc                                                                                                                                >  1:468147/1‑150 (MQ=255)

                                                                                                                         aaaGTGAACCAGGGCGATTCGCTGTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGCCAGGCATCGTTGCTGAAGAcc                                                                                                                                >  1:243158/1‑150 (MQ=255)

                                                                                                                         aaaGTGAACCAGGGCGATTCGCTGTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGCCAGGCATCGTTGCTGAAGACCAACTACGTTAGCCGTCAGGATTACGac                                                                                                     <  2:243176/177‑1 (MQ=255)

                                                                                                                           aGTGAACCAGGGCGATTCGCTGTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCC‑AAAGGCTTGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGCCAGGc                                                                                                                                                >  4:516727/1‑132 (MQ=255)

                                                                                                                              gAACCAGGGCGATTCGCTGTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGCCAGGCATCGTTGCTGAAGACCAACTACGTTAGCCGTCAGGATTACGACACCGCGCGCACCCAGTTGAATGAAGCAg                                                                         >  2:331833/1‑200 (MQ=255)

                                                                                                                               aaCCAGGGCGATTCGCTGTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGCCAGGCATCGTTGCTGAAGACCAACTACGTTAGCCGTCAGGATTACGACACCGCGCGCACCCAGTTGAATGAAGCAGa                                                                        >  2:358674/1‑200 (MQ=255)

                                                                                                                               aaCCAGGGCGATTCGCTGTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGCCAGGCATCGTTGCTGAAGACCAACTACGTTAGCCGTCAGGATTACGACACCGCGCGCACCCAGTTGAATGAAGCAGa                                                                        >  2:324487/1‑200 (MQ=255)

                                                                                                                                aCCAGGGCGATTCGCTGTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGCCAGGCATCGTTGCTGAAGACCAACTACg                                                                                                                         <  1:96732/150‑1 (MQ=255)

                                                                                                                                  cAGGGCGATTCGCTGTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGCCAGGCATCGTTGCTGAAGACCAACTACGtt                                                                                                                       <  1:267551/150‑1 (MQ=255)

                                                                                                                                    gggCGATTCGCTGTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGCCAGGCATCGTTGCTGAAGACCAACTACGTTAg                                                                                                                     >  1:124519/1‑150 (MQ=255)

                                                                                                                                       cgtttCGCTGTAGCGAATTGACCTGGAACCTTTCCAGGCCG‑GCCAAACCTCGCCAAAAGGCTGGCTGGGGAAGCGGCTCTCTACTGCCAGC‑ATGCCCGCATCACCTTTAACCGCCAGGCATCGTTGCTGAAGACCAACTACGTTAGCCGTCAGGATTACGACACCGCGCGCACCCAGTTGAATGAAGCAGAAGCCAATGt                                                               <  2:407237/197‑1 (MQ=255)

                                                                                                                                             gCTGTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGCCAGGCATCGTTGCTGAAGACCAACTACGTTAGCCGTCAGGATTACGACACCGCGCGCACCCAGTTGAATGAAGCAGAAGCCAATGTCACCg                                                          <  2:648899/200‑1 (MQ=255)

                                                                                                                                                gTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCACTGCCCGCATCACCTTTAACCGCCAGGCATCGTTGCTGAAGCCCAATTa                                                                                                                           >  4:156478/1‑132 (MQ=255)

                                                                                                                                                gTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGCCAGGCATCGTTGCTGAAGACCAACTa                                                                                                                           >  4:742418/1‑132 (MQ=255)

                                                                                                                                                gTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGCCAGGCATCGTTGCTGAAGACCAACTACGTTAGCCg                                                                                                                  >  3:396524/1‑141 (MQ=255)

                                                                                                                                                gTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGCCAGGCATCGTTGCTGAAGACCAACTACGTTAGCCg                                                                                                                  >  3:448371/1‑141 (MQ=255)

                                                                                                                                                gTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGCCAGGCATCGTTGCTGAAGACCAACTACGTTAGCCg                                                                                                                  >  3:677073/1‑141 (MQ=255)

                                                                                                                                                gTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGCCAGGCATCGTTGCTGAAGACCAACTACGCTAGCCg                                                                                                                  >  3:139463/1‑141 (MQ=255)

                                                                                                                                                      gATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCCCCTTTAACCGCCAGGCATCGTTGCTGAAGACCAACTACGTTAGCCGTCAGGa                                                                                                            >  3:114953/1‑141 (MQ=255)

                                                                                                                                                      gATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGCCAGGCATCGTTGCTGAAGACCAACTACGTTAGCCGTCAggc                                                                                                            >  3:193333/1‑140 (MQ=255)

                                                                                                                                                      gATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGCCAGGCATCGTTGCTGAAGACCAACTACGTTAGCCGTCAGGa                                                                                                            >  3:153615/1‑141 (MQ=255)

                                                                                                                                                      gATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGCCAGGCATCGTTGCTGAAGACCAACTACGTTAGCCGTCAGGATTACGaccc                                                                                                   >  1:361207/1‑148 (MQ=255)

                                                                                                                                                           aTCCTGCACCTTTACAGGCCGAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAAACGCCAGGCATCGTTGCTGAAGACCAACTACGTTAGCCGTCAGGATTACg                                                                                                       >  3:704822/1‑141 (MQ=255)

                                                                                                                                                           aTCCTGCACCTTTACAGGCCGAGCCAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCATTGCCCGCCTCACCTTTAACCGCCAGGCATCGTTGCTGAAGACCAACTACGTTAGCCGTc                                                                                                                >  4:308202/1‑132 (MQ=255)

                                                                                                                                                            tCCTGCACCTTTACAGGCCGAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGCCAGGCATCGTTGCTGAAGACCAACTACGTAAGCCGTAAGGATTACGACACcgcgcg                                                                                             >  1:707038/1‑150 (MQ=255)

                                                                                                                                                               tGCACCTTTACAGGCCGAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGCCAGGCATCGTTGCTGAAGACCAACTACGTTAGCCGTCAGGATTACGacac                                                                                                   <  3:341472/141‑1 (MQ=255)

                                                                                                                                                                   ccTTTACAGGCCGAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCATCAATGCCCGCATCACCTTTAACCGCCAGTCCTCGTTGCTGAACACCAACTACGTTAGCCGTCAGGATTACGCCACCTCGCGCACCCAg                                                                                      >  1:318576/1‑150 (MQ=255)

                                                                                                                                                                   ccTTTACAGGCCGAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGCCAGGCATCGTTGCTGAAGACCAACTACGTTAGCCGTCAGGATTAc                                                                                                        >  4:533128/1‑132 (MQ=255)

                                                                                                                                                                   ccTTTACAGGCCGAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGCCAGGCATCGTTGCTGAAGACCAACTACGTTAGCCGTCAGGATTACGACACCGCGCGCACCCAg                                                                                      >  1:563920/1‑150 (MQ=255)

                                                                                                                                                                   ccTTTACAGGCCGAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGCCAGGCATCGTTGCTGAAGACCAACTACGTTAGCCGTCAGGATTACGACACCGCGCGCACCCAg                                                                                      >  1:385046/1‑150 (MQ=255)

                                                                                                                                                                     tttACAGGCCGAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGCCAGGCATCGTTGCTGAAGACCAACTACGTTAGCCGTCAGGATTACGACACcgcccg                                                                                             >  3:381104/1‑141 (MQ=255)

                                                                                                                                                                      ttACAGGCCGAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGCCAGGCATCGTTGCTGAAGACCAACTACGTTAGCCGTCAGGATTACGac                                                                                                     <  4:694673/132‑1 (MQ=255)

                                                                                                                                                                        aCAGGCCGAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGCCAGGCATCGTTGCTGAAGACCAACTACGTTAGCCGTCAGGATTACGACACCGCGCGCACCCAGTTGAATGAAGCAGAAGCCAATGTCACCGTCGCCAAAGCGGCTGTTGAACAGGcga                               <  2:274113/200‑1 (MQ=255)

                                                                                                                                                                          aGGCCGAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGCCAGGCATCGTTGCTGAAGACCAACTACGTTAGCCGTCAGGATTACGACACCGCGCGCAccc                                                                                        <  3:571112/141‑1 (MQ=255)

                                                                                                                                                                           ggCCGAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGCCAGGCATCGTTGCTGAAGACCAACTACGTTAGCCGTCAGGATTACGACACCGCGCGCACCCAGTtgaatga                                                                              <  1:366950/150‑1 (MQ=255)

                                                                                                                                                                             ccGAGCTAAACTCCGCC‑AAAGGCTCTCTGGCGAAAGCGCGCTCTACCGCCAGCAATGCCCGCATCACCTTTAGCCGCCAGGCATCGTTGCTGAAGACCAACTACGTTAGCCGTCAGGATTACGACACCGCGCGCACCCAGt                                                                                     <  3:240437/141‑1 (MQ=255)

                                                                                                                                                                               gAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGCCAGGCATCGTTGCTGACGACCAACTACGTTAGCCGTCAGGCTTACGACTCCgcgcgc                                                                                            >  4:662335/1‑132 (MQ=255)

                                                                                                                                                                                   tAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGCCAGGCATCGTTGCTGAAGACCAACTACGTTAGCCGTCAGGATTACGACACCGCGCGCACCCAGTTGAATGAAGCAGAAg                                                                      <  1:659829/150‑1 (MQ=255)

                                                                                                                                                                                    aaaCTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGCCAGGCATCGTTGCTGAAGACCAACTACGTTAGCCGTCAGGATTACGACACCGCGCGCACCCAGTtgaatga                                                                              <  3:547771/141‑1 (MQ=255)

                                                                                                                                                                                    aaaCTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGCCAGGCATCGTTGCTGAAGACCAACTACGTTAGCCGTCAGGATTACGACACCGCGCGCACCCAGTtgaatga                                                                              <  3:278449/141‑1 (MQ=255)

                                                                                                                                                                                    aaaCTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCCTTAACCGCCAGGCATCGTTGCTGAAGACCAACTACGTTAGCCGTCAGGATTACGACACCGCGCGCACCCAGTTGAATGAAGCAGAAGCCAATGTCACCGTCGCCAAAGCGGCTGTTGAACAGGCGACGATCAATCTGc                   >  2:504860/1‑200 (MQ=255)

                                                                                                                                                                                      aCTCCGCC‑AAAGGCTCGCTGGCAAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGCCAGGCATCGTTGCTGAAGACCAACTACGTTAGCCGTCAGGATTACGACACCGCGCGCACCCAGTTGAATGAAGCAGAAGCCAATGTCACCGTCGCCAAAGCGGCTGTTGAACAGGCGACGATCAATCTGCaa                 <  2:45768/200‑1 (MQ=255)

                                                                                                                                                                                         ccGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGCCAGGCATCGTTGCTGAAGACCAACTACGTTAGCCGTCAGGATTACGACACCGCGCGCACCCAGTTGAATGAAGCAGAAGCCAAtt                                                                >  1:412126/1‑149 (MQ=255)

                                                                                                                                                                                           gCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGCCAGGCATCGTTGCTGAAGACCAACTACGTTAGCCGTCAGGATTACGACACCGCGCGCACCCAGTTGAATGAAGCAGAAGCCAATGTc                                                              >  1:325412/1‑150 (MQ=255)

                                                                                                                                                                                           gCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCAGCACCTTTAACCGCCAGGCATCGTTGCTGAAGACCAACTACGTTAGCCGTCAGGATTACGACACCGCGCGCACCCAGTTGAATGAAGCAGAAGCCAATGTc                                                              <  1:695220/150‑1 (MQ=255)

                                                                                                                                                                                                 aGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGCCAGGCATCGTTGCTGAAGACCAACTACGTTAGCCGTCAGGATTACGACACCGCGCGCACCCAGTTGAATGAAGCAGAAGCCAATGTCACCGTCGCCAAAGCGGCTGTTGAACAGGCGACGATCAATCTGCAATACGCGAATg       >  2:95483/1‑200 (MQ=255)

                                                                                                                                                                                                       gCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGCCAGGCATCGTTGCTGAAGACCAACTACGTTAGCCGTCAGGATTACGACACCGCGCGCACCCAGTTGAATGAAGCAGAAGCCAATGTCAc                                                            <  3:714220/141‑1 (MQ=255)

CTCCCCCGGTTCGGTCAATGTGTTGAGCGAATTGCCCGGTAGAACCGTTCCTTATGAAGTTGCCGAGATACGTCCCCAGGTGGGCGGTATTATCATTAAACGCAACTTTATCGAAGGCGATAAAGTGAACCAGGGCGATTCGCTGTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCC‑AAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGCCAGGCATCGTTGCTGAAGACCAACTACGTTAGCCGTCAGGATTACGACACCGCGCGCACCCAGTTGAATGAAGCAGAAGCCAATGTCACCGTCGCCAAAGCGGCTGTTGAACAGGCGACGATCAATCTGCAATACGCGAATGTCACC  >  NC_000913/3659354‑3659750

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.